##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063940_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1752527 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.370257918993545 32.0 32.0 32.0 32.0 32.0 2 31.434311711032127 32.0 32.0 32.0 32.0 32.0 3 31.49791529602682 32.0 32.0 32.0 32.0 32.0 4 31.571466231333382 32.0 32.0 32.0 32.0 32.0 5 31.528457478829143 32.0 32.0 32.0 32.0 32.0 6 35.127029711953085 36.0 36.0 36.0 36.0 36.0 7 35.14486909474148 36.0 36.0 36.0 36.0 36.0 8 35.09306732506832 36.0 36.0 36.0 36.0 36.0 9 35.195729366794346 36.0 36.0 36.0 36.0 36.0 10 35.05264341148524 36.0 36.0 36.0 36.0 36.0 11 35.19553422001487 36.0 36.0 36.0 36.0 36.0 12 35.0958204923519 36.0 36.0 36.0 36.0 36.0 13 35.138188455869724 36.0 36.0 36.0 36.0 36.0 14 35.0821145694189 36.0 36.0 36.0 36.0 36.0 15 35.058170858423296 36.0 36.0 36.0 36.0 36.0 16 35.07095240187455 36.0 36.0 36.0 36.0 36.0 17 35.039243903232304 36.0 36.0 36.0 36.0 36.0 18 35.03425396584475 36.0 36.0 36.0 36.0 36.0 19 35.02770913087216 36.0 36.0 36.0 36.0 36.0 20 35.02489890312674 36.0 36.0 36.0 36.0 36.0 21 35.01463429664707 36.0 36.0 36.0 36.0 36.0 22 35.001469877496895 36.0 36.0 36.0 36.0 36.0 23 34.95532394080091 36.0 36.0 36.0 36.0 36.0 24 34.91509175036961 36.0 36.0 36.0 32.0 36.0 25 34.89516794891035 36.0 36.0 36.0 32.0 36.0 26 34.8346148162054 36.0 36.0 36.0 32.0 36.0 27 34.82774816022806 36.0 36.0 36.0 32.0 36.0 28 34.80233685415403 36.0 36.0 36.0 32.0 36.0 29 34.77253417493711 36.0 36.0 36.0 32.0 36.0 30 34.75678776988885 36.0 36.0 36.0 32.0 36.0 31 34.749234105951004 36.0 36.0 36.0 32.0 36.0 32 34.71065267468062 36.0 36.0 36.0 32.0 36.0 33 34.695496845412364 36.0 36.0 36.0 32.0 36.0 34 34.690061265817874 36.0 36.0 36.0 32.0 36.0 35 34.6501189425327 36.0 36.0 36.0 32.0 36.0 36 34.624416628103305 36.0 36.0 36.0 32.0 36.0 37 34.61193750509978 36.0 36.0 36.0 32.0 36.0 38 34.5770484563148 36.0 36.0 36.0 32.0 36.0 39 34.56754503639601 36.0 36.0 36.0 32.0 36.0 40 34.54761895251828 36.0 36.0 36.0 32.0 36.0 41 34.54180449145719 36.0 36.0 36.0 32.0 36.0 42 34.47949446713232 36.0 36.0 36.0 32.0 36.0 43 34.48092782593364 36.0 36.0 36.0 32.0 36.0 44 34.40765477507622 36.0 36.0 36.0 32.0 36.0 45 34.386610876751114 36.0 36.0 36.0 32.0 36.0 46 34.36003953148796 36.0 36.0 36.0 32.0 36.0 47 34.33758338673242 36.0 36.0 36.0 32.0 36.0 48 34.30097339441846 36.0 36.0 36.0 32.0 36.0 49 34.28209494062003 36.0 36.0 36.0 32.0 36.0 50 33.6869697299956 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 5.0 18 2.0 19 4.0 20 22.0 21 59.0 22 143.0 23 435.0 24 1292.0 25 3068.0 26 6039.0 27 11151.0 28 18948.0 29 29328.0 30 42984.0 31 61314.0 32 88343.0 33 143068.0 34 302037.0 35 1044283.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.34994287853385 17.988753747704582 11.832988474132137 26.828314899629426 2 15.971951183327285 20.16415256693805 37.28616457709944 26.57773167263523 3 18.17836342233454 24.03768737985179 28.870034801255105 28.91391439655856 4 12.470392752864862 16.11501563171352 35.789006389059914 35.62558522636171 5 14.37022082969335 36.856322327701655 33.35075579434725 15.422701048257744 6 34.385149647023376 35.460398830486774 16.746247127000828 13.40820439548902 7 30.372217017037123 30.46111726730445 20.65989320557869 18.506772510079735 8 28.033421472777007 33.27733796816709 19.153439093057678 19.535801465998222 9 27.72010791416168 14.015831062297146 18.282925459799234 39.98113556374194 10 16.174143669611592 26.505514671268077 31.461957070642228 25.858384588478106 11 37.29939681385793 20.639567892534608 22.89111665611999 19.169918637487466 12 25.272792114235177 23.302663300095578 28.653799517838547 22.770745067830703 13 29.816013302003174 19.36493662261957 25.019258004767998 25.79979207060926 14 23.666508228422682 19.736859373600232 24.805780009734537 31.790852388242552 15 25.175512328232447 27.761391111027418 21.758507133763704 25.30458942697643 16 25.778979604762746 25.508739715506323 23.850496172077076 24.861784507653848 17 24.21937008673761 25.92273899346487 25.05473524801615 24.803155671781376 18 25.03064152045849 24.639947869472827 26.323747920142605 24.005662689926073 19 26.00029899699063 24.493616642492036 25.054464241899975 24.451620118617356 20 26.318032863589913 24.2585378629708 24.652428478582518 24.771000794856768 21 26.934135679507364 23.931956540469848 24.131725217357562 25.002182562665226 22 26.236490176151957 24.442274871456604 24.476967751028376 24.844267201363067 23 24.64229978060102 24.29611158820324 25.234363186620374 25.82722544457537 24 25.40006698928799 24.608805953031037 25.00138372251599 24.98974333516498 25 25.18636191415255 24.396064145930623 25.164336286821598 25.25323765309523 26 24.721370223377452 25.178282541521273 25.47575774003304 24.624589495068232 27 25.35225814992856 24.812372461207662 24.711482714071153 25.12388667479263 28 24.748267286901683 24.650803958334997 25.25977857336056 25.341150181402767 29 24.954264761098287 24.614003713598688 25.003166944178474 25.428564581124558 30 24.760680366203548 24.833720216289258 25.347852286033184 25.057747131474013 31 25.67674216490157 24.287621055202486 24.518903471404695 25.516733308491258 32 25.072112545214782 24.811280541909728 24.408762722764283 25.707844190111206 33 24.606050853463756 24.628362512532476 25.17160290724912 25.593983726754647 34 25.405782323211863 24.546199982995518 25.32481131014979 24.72320638364283 35 25.788699740309834 24.46354380352793 25.092768904285546 24.65498755187669 36 24.767445509976405 24.885113716449297 25.065039931293636 25.282400842280662 37 25.681215391427802 24.644898359787636 24.53596552495469 25.137920723829872 38 25.12112002209549 24.784551875890923 24.929838837613 25.164489264400586 39 25.76338752787523 24.28431705975399 24.475306598982456 25.476988813388328 40 26.06561782980814 24.501891889270127 25.00146934545938 24.431020935462353 41 25.180945642125923 24.565639158668386 25.445659244718854 24.807755954486836 42 25.835308134621627 25.187432560512228 24.84688989481865 24.130369410047493 43 25.028787347946313 24.387591255037073 25.290526822732705 25.29309457428391 44 24.844665207802546 24.785264521356574 24.847575327887796 25.522494942953088 45 24.96202572094069 25.066733162073422 24.82718992617412 25.144051190811766 46 24.98151216773257 24.48673440973601 24.923252671605887 25.608500750925533 47 25.432213593230202 24.42587404207727 25.16014356715302 24.981768797539498 48 25.671629697385036 25.024607829655043 24.29638725676765 25.00737521619227 49 25.10734548384354 24.95533571961274 24.605895856193285 25.331422940350436 50 24.949515180253204 25.503749771042283 24.463982169543403 25.082752879161106 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 17.0 1 22.5 2 28.0 3 85.5 4 143.0 5 165.5 6 188.0 7 180.0 8 172.0 9 234.5 10 297.0 11 485.0 12 673.0 13 1225.0 14 1777.0 15 2357.5 16 2938.0 17 3078.0 18 3218.0 19 3184.0 20 3150.0 21 3564.5 22 3979.0 23 4655.0 24 5331.0 25 7025.0 26 8719.0 27 11482.5 28 14246.0 29 17345.5 30 20445.0 31 23952.0 32 27459.0 33 33289.0 34 39119.0 35 46397.0 36 53675.0 37 61062.0 38 68449.0 39 72662.5 40 76876.0 41 82973.5 42 89071.0 43 91097.5 44 93124.0 45 101585.5 46 110047.0 47 117625.0 48 125203.0 49 130159.5 50 135116.0 51 132624.0 52 130132.0 53 128780.5 54 127429.0 55 128180.5 56 128932.0 57 125365.5 58 121799.0 59 111343.0 60 100887.0 61 88365.0 62 75843.0 63 66293.5 64 56744.0 65 48181.0 66 39618.0 67 33857.0 68 28096.0 69 25286.0 70 22476.0 71 17684.0 72 12892.0 73 11023.5 74 9155.0 75 7193.5 76 5232.0 77 4592.5 78 3953.0 79 3271.5 80 2590.0 81 2037.5 82 1485.0 83 1206.5 84 928.0 85 684.5 86 441.0 87 304.0 88 167.0 89 132.0 90 97.0 91 83.5 92 70.0 93 48.0 94 26.0 95 34.5 96 43.0 97 30.0 98 17.0 99 16.0 100 15.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0069043158821518865 2 6.276650801956261E-4 3 2.2824184734386403E-4 4 0.0 5 0.0 6 1.7118138550789802E-4 7 5.706046183596601E-5 8 5.706046183596601E-5 9 0.0013123906222272182 10 0.0011412092367193202 11 0.0 12 1.1412092367193202E-4 13 5.135441565236941E-4 14 2.2824184734386403E-4 15 0.004907199717893077 16 5.706046183596601E-4 17 0.0 18 1.7118138550789802E-4 19 5.706046183596601E-5 20 5.706046183596601E-4 21 0.0 22 3.4236277101579605E-4 23 6.847255420315921E-4 24 4.5648369468772806E-4 25 0.0013123906222272182 26 0.006390771725628193 27 0.0067901949584799545 28 0.004165413714025518 29 0.0027959626299623344 30 0.0033665672483219945 31 0.007075497267659786 32 0.0033095067864860285 33 0.004564836946877281 34 0.0027389021681263684 35 0.003081264939142165 36 0.008102585580707172 37 0.004051292790353586 38 0.0075890414241834795 39 0.00427953463769745 40 0.0026247812444544364 41 0.0038230509430097225 42 0.0017118138550789802 43 0.0011982696985552862 44 0.0012553301603912522 45 0.0014265115458991502 46 0.0013123906222272182 47 0.0021112370879307423 48 0.0020541766260947763 49 4.5648369468772806E-4 50 0.0011412092367193202 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1752527.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 58.24834866684691 #Duplication Level Percentage of deduplicated Percentage of total 1 81.6125983578983 47.53799084758198 2 10.984066408607903 12.796074598967882 3 2.972093189157974 5.193585610573039 4 1.3223651338031128 3.0810234151458156 5 0.7551099161481877 2.1991952838796585 6 0.4837380684532301 1.6906166204814481 7 0.3288369463474903 1.3407946373772892 8 0.25807721055424193 1.2026057074664598 9 0.18610401965287887 0.9756226642538356 >10 0.9621386620908657 10.015616428211745 >50 0.06698280868406566 2.7328310688074327 >100 0.05931741229319662 7.255850769023654 >500 0.006798376727503833 2.663491544495504 >1k 0.0017734895810879567 1.3147008037341736 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.1412092367193202E-4 2 0.0 0.0 0.0 0.0 1.1412092367193202E-4 3 0.0 0.0 0.0 0.0 1.1412092367193202E-4 4 0.0 0.0 0.0 0.0 1.1412092367193202E-4 5 0.0 0.0 0.0 0.0 1.1412092367193202E-4 6 0.0 0.0 0.0 0.0 2.8530230917983004E-4 7 0.0 0.0 0.0 5.706046183596601E-5 2.8530230917983004E-4 8 0.0 0.0 0.0 5.706046183596601E-5 2.8530230917983004E-4 9 0.0 0.0 0.0 5.706046183596601E-5 2.8530230917983004E-4 10 0.0 0.0 0.0 5.706046183596601E-5 2.8530230917983004E-4 11 0.0 0.0 0.0 5.706046183596601E-5 2.8530230917983004E-4 12 0.0 0.0 0.0 5.706046183596601E-5 4.5648369468772806E-4 13 0.0 0.0 0.0 5.706046183596601E-5 4.5648369468772806E-4 14 0.0 0.0 0.0 5.706046183596601E-5 4.5648369468772806E-4 15 0.0 0.0 0.0 1.7118138550789802E-4 4.5648369468772806E-4 16 0.0 0.0 0.0 1.7118138550789802E-4 4.5648369468772806E-4 17 0.0 0.0 0.0 1.7118138550789802E-4 4.5648369468772806E-4 18 0.0 0.0 0.0 1.7118138550789802E-4 4.5648369468772806E-4 19 0.0 0.0 0.0 1.7118138550789802E-4 4.5648369468772806E-4 20 0.0 0.0 0.0 3.9942323285176206E-4 5.706046183596601E-4 21 0.0 5.706046183596601E-5 0.0 3.9942323285176206E-4 6.276650801956261E-4 22 0.0 5.706046183596601E-5 0.0 5.706046183596601E-4 6.847255420315921E-4 23 0.0 5.706046183596601E-5 0.0 6.276650801956261E-4 7.417860038675581E-4 24 0.0 5.706046183596601E-5 0.0 0.0011412092367193202 7.417860038675581E-4 25 0.0 5.706046183596601E-5 0.0 0.0012553301603912522 7.417860038675581E-4 26 0.0 5.706046183596601E-5 0.0 0.0017688743169149462 7.417860038675581E-4 27 0.0 5.706046183596601E-5 0.0 0.0020541766260947763 7.417860038675581E-4 28 0.0 5.706046183596601E-5 0.0 0.0038230509430097225 7.417860038675581E-4 29 0.0 5.706046183596601E-5 0.0 0.007132557729495751 7.417860038675581E-4 30 0.0 5.706046183596601E-5 0.0 0.013466268993287978 7.417860038675581E-4 31 0.0 5.706046183596601E-5 0.0 0.029785561078374257 7.417860038675581E-4 32 0.0 5.706046183596601E-5 0.0 0.047645485633031615 8.559069275394901E-4 33 0.0 5.706046183596601E-5 0.0 0.06807313097030744 8.559069275394901E-4 34 0.0 5.706046183596601E-5 0.0 0.08998434831531839 0.0010270883130473881 35 0.0 5.706046183596601E-5 0.0 0.11526213290865134 0.0010270883130473881 36 0.0 5.706046183596601E-5 0.0 0.15246555402570117 0.0010270883130473881 37 0.0 5.706046183596601E-5 0.0 0.20752889969740837 0.0010270883130473881 38 0.0 5.706046183596601E-5 0.0 0.28347637440107915 0.0010270883130473881 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2300 0.0 25.441895 1 GGTATCA 1040 0.0 20.306427 1 TAGGACG 1005 0.0 19.482485 4 GTATTAC 185 1.8189894E-12 19.025843 1 GACGTGA 600 0.0 18.333239 7 GTCTATA 145 6.31735E-9 18.205763 1 GTATAAT 135 5.5337296E-8 17.92481 1 TTAGGAC 700 0.0 17.913172 3 ACCGTCG 430 0.0 17.906883 8 AACGCAG 3280 0.0 17.774298 6 TACCGTC 450 0.0 17.59991 7 AGGACGT 1125 0.0 17.599907 5 TCAACGC 3325 0.0 17.467579 4 GGACGTG 1145 0.0 17.292486 6 GTCCTAC 990 0.0 17.110046 1 CAACGCA 3425 0.0 16.957577 5 ATACCGT 445 0.0 16.8089 6 TATCAAC 3470 0.0 16.736233 2 GTCCTAA 580 0.0 16.688616 1 ATCAACG 3505 0.0 16.569582 3 >>END_MODULE