FastQCFastQC Report
Thu 2 Feb 2017
SRR4063939_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063939_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1109518
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGCATA500.002579216122.00159837
GTAATAC1650.021.3323
TAGTACG755.4747466E-520.5320514
CGTGCGG654.93389E-420.30642310
GTATCAA21600.019.6588361
AATCACG1352.5956979E-919.55697834
GTATAGG1203.158966E-718.3346671
GTCCTAA1951.8189894E-1218.0525951
ACCGTCG2750.017.59898
GTATATG1651.6570993E-917.3345951
ATACCGT2700.017.1100436
GTAGCAC1551.4397301E-817.0311953
GTATTAG3000.016.8678931
TATGGTA1053.7759153E-516.7608572
CGTGATT800.00198724516.501228
CGTCGTA2800.016.4989710
TACGAGC2151.2732926E-1116.37106914
AACGCAG26200.016.289066
GTATTGG2051.05501385E-1016.0987321
GTCTTAG3300.016.0011631
Produced by FastQC (version 0.11.5)