##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063926_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2289427 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.354247591209504 32.0 32.0 32.0 32.0 32.0 2 31.484516868194532 32.0 32.0 32.0 32.0 32.0 3 31.539648130296356 32.0 32.0 32.0 32.0 32.0 4 31.60796959239146 32.0 32.0 32.0 32.0 32.0 5 31.596631820975293 32.0 32.0 32.0 32.0 32.0 6 35.18927618133271 36.0 36.0 36.0 36.0 36.0 7 35.20259130341348 36.0 36.0 36.0 36.0 36.0 8 35.153159720751084 36.0 36.0 36.0 36.0 36.0 9 35.24378720090223 36.0 36.0 36.0 36.0 36.0 10 35.144167077613744 36.0 36.0 36.0 36.0 36.0 11 35.25426100067833 36.0 36.0 36.0 36.0 36.0 12 35.184592913423316 36.0 36.0 36.0 36.0 36.0 13 35.215351264748776 36.0 36.0 36.0 36.0 36.0 14 35.17075407951422 36.0 36.0 36.0 36.0 36.0 15 35.160753760657144 36.0 36.0 36.0 36.0 36.0 16 35.17486646221958 36.0 36.0 36.0 36.0 36.0 17 35.15966003720582 36.0 36.0 36.0 36.0 36.0 18 35.15029961645425 36.0 36.0 36.0 36.0 36.0 19 35.14305457217024 36.0 36.0 36.0 36.0 36.0 20 35.13775674000525 36.0 36.0 36.0 36.0 36.0 21 35.13485426702839 36.0 36.0 36.0 36.0 36.0 22 35.120491284500446 36.0 36.0 36.0 36.0 36.0 23 35.083022520482196 36.0 36.0 36.0 36.0 36.0 24 35.07188261516965 36.0 36.0 36.0 36.0 36.0 25 35.042104858551944 36.0 36.0 36.0 36.0 36.0 26 34.996807934911224 36.0 36.0 36.0 36.0 36.0 27 34.988595836425446 36.0 36.0 36.0 36.0 36.0 28 34.97133300166374 36.0 36.0 36.0 36.0 36.0 29 34.95270912765508 36.0 36.0 36.0 36.0 36.0 30 34.94281232815023 36.0 36.0 36.0 36.0 36.0 31 34.9230571667059 36.0 36.0 36.0 36.0 36.0 32 34.9058502411302 36.0 36.0 36.0 36.0 36.0 33 34.896527821153505 36.0 36.0 36.0 36.0 36.0 34 34.891143941256914 36.0 36.0 36.0 36.0 36.0 35 34.86744063034113 36.0 36.0 36.0 36.0 36.0 36 34.8476326172444 36.0 36.0 36.0 36.0 36.0 37 34.82537595651663 36.0 36.0 36.0 36.0 36.0 38 34.81389972250699 36.0 36.0 36.0 36.0 36.0 39 34.78918000006115 36.0 36.0 36.0 36.0 36.0 40 34.78880654417022 36.0 36.0 36.0 36.0 36.0 41 34.76942833294095 36.0 36.0 36.0 32.0 36.0 42 34.75460104209481 36.0 36.0 36.0 32.0 36.0 43 34.73035829489213 36.0 36.0 36.0 32.0 36.0 44 34.70471912841073 36.0 36.0 36.0 32.0 36.0 45 34.68192434176761 36.0 36.0 36.0 32.0 36.0 46 34.659024288610205 36.0 36.0 36.0 32.0 36.0 47 34.6367527770049 36.0 36.0 36.0 32.0 36.0 48 34.61364088044738 36.0 36.0 36.0 32.0 36.0 49 34.593174624043485 36.0 36.0 36.0 32.0 36.0 50 34.07279856488108 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 2.0 20 17.0 21 52.0 22 180.0 23 550.0 24 1306.0 25 3176.0 26 6437.0 27 12198.0 28 20977.0 29 33109.0 30 48426.0 31 69300.0 32 99406.0 33 157343.0 34 335032.0 35 1501913.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.68271656441182 20.357240364054928 12.71195584512595 25.248087226407307 2 13.65942828189734 22.553883852425184 41.331519187215946 22.45516867846153 3 17.20290099422474 27.184678054111473 30.321364955870955 25.291055995792828 4 10.809822719833392 18.6689944689217 39.521067935339275 31.00011487590563 5 11.612075860029606 39.9555434613115 35.4921558975237 12.940224781135193 6 29.306973247821173 39.80700797275818 19.29597046589509 11.59004831352556 7 27.46644023406771 33.24086461960066 22.371007891508036 16.921687254823595 8 25.21648429934652 37.2257337753071 20.718983396282127 16.83879852906426 9 27.216626605066587 15.536271436377621 20.502745053160425 36.744356905395364 10 13.588423577757084 31.016260943858075 34.87222920120974 20.5230862771751 11 33.349581947614816 23.968758981508902 24.680334721454198 18.00132434942208 12 22.860781952483226 26.9314145966036 31.81124676392261 18.396556686990564 13 28.282172654133948 23.25963638841436 26.439130242974095 22.01906071447759 14 21.11812501146578 22.850308942606475 28.80801355101855 27.2235524949092 15 22.43225877186277 31.64116947395687 24.311711207218508 21.61486054696185 16 21.35870296374078 30.023927624831614 27.653004886861382 20.96436452456622 17 20.759648593294305 29.787234971894716 27.863303787366885 21.5898126474441 18 20.48340543298227 29.411721026773545 29.891579716120738 20.21329382412345 19 22.751903752294243 28.061182147839673 28.567903046440463 20.619011053425616 20 23.810470194761717 27.987348722139693 28.483720499534158 19.718460583564436 21 23.97368424500978 27.529770549574195 27.14779724358977 21.348747961826255 22 23.125766571038202 28.87216652631064 27.603589736421863 20.39847716622929 23 22.18620613442159 28.86513506324121 27.702302209871632 21.246356592465567 24 22.01048476075579 28.34196289187907 28.62247086377411 21.025081483591027 25 21.979638137520322 28.542556100390588 28.226356678538888 21.251449083550206 26 21.099055567373764 29.064902060052127 28.63062292541293 21.205419447161177 27 21.572183636919583 29.007207443323285 28.135543615952475 21.285065303804657 28 20.967697550070305 29.114007541941294 28.146082851278386 21.772212056710018 29 21.633378687976798 28.742249488395256 27.929054563164897 21.695317260463053 30 21.34578407245401 28.720173744246164 28.441709451886176 21.492332731413654 31 22.14025928187709 28.297046276372225 28.168925489003804 21.393768952746886 32 21.272193342357653 28.9661037604685 28.376814746770833 21.384888150403015 33 21.328142881853747 28.87195915664482 28.56470795847872 21.235190003022716 34 21.416397085995285 28.981487386420124 28.82624735842974 20.775868169154847 35 21.526955432386355 28.984739356490675 28.45611838803365 21.03218682308932 36 20.99789275411446 28.76740094109671 29.118171763254598 21.116534541534236 37 21.311469681218167 28.44929106205282 28.069399914385805 22.16983934234321 38 21.025849581783334 29.015779881917346 28.391818434382703 21.566552101916614 39 21.828183893807086 28.241290186747904 28.4294227645224 21.501103154922614 40 22.043550883912065 28.037170083621334 28.885308085026086 21.033970947440515 41 21.979474478508045 27.790175792639378 28.953303237388862 21.277046491463718 42 21.408144821678874 28.410561632161706 28.907551866639935 21.273741679519485 43 20.91687465547531 28.44727800379665 29.0041958848355 21.631651455892538 44 20.673984744467873 28.467820593963744 29.030282620023858 21.82791204154453 45 20.875420581281222 28.465648724922914 28.864881533997472 21.794049159798394 46 20.898461301920197 28.050282104111858 28.915660545565807 22.135596048402135 47 21.393811504177773 28.045839544994116 28.810327001625335 21.750021949202775 48 20.52385247566486 28.21469521290652 29.155166125400488 22.106286186028125 49 21.239328073772462 27.906612073461467 28.897344215866216 21.956715636899858 50 20.598708130878187 28.684596286531473 28.788684875836246 21.928010706754094 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1.0 1 1.5 2 2.0 3 23.0 4 44.0 5 74.5 6 105.0 7 143.0 8 181.0 9 271.0 10 361.0 11 578.5 12 796.0 13 1371.0 14 1946.0 15 2762.0 16 3578.0 17 4230.5 18 4883.0 19 5930.0 20 6977.0 21 8996.0 22 11015.0 23 14103.0 24 17191.0 25 22167.0 26 27143.0 27 34547.5 28 41952.0 29 51835.0 30 61718.0 31 74032.0 32 86346.0 33 101141.0 34 115936.0 35 132721.0 36 149506.0 37 160285.5 38 171065.0 39 176314.5 40 181564.0 41 186600.0 42 191636.0 43 193819.0 44 196002.0 45 195634.5 46 195267.0 47 191201.0 48 187135.0 49 180061.5 50 172988.0 51 159749.5 52 146511.0 53 131073.5 54 115636.0 55 99014.5 56 82393.0 57 68144.5 58 53896.0 59 42946.0 60 31996.0 61 24496.0 62 16996.0 63 12567.5 64 8139.0 65 6182.0 66 4225.0 67 3113.5 68 2002.0 69 1532.5 70 1063.0 71 728.0 72 393.0 73 311.0 74 229.0 75 201.5 76 174.0 77 154.5 78 135.0 79 114.5 80 94.0 81 79.0 82 64.0 83 59.5 84 55.0 85 41.5 86 28.0 87 22.5 88 17.0 89 15.5 90 14.0 91 12.5 92 11.0 93 10.0 94 9.0 95 6.0 96 3.0 97 4.0 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009259958932955713 2 5.241486188465498E-4 3 2.183952578527291E-4 4 0.0 5 0.0 6 2.620743094232749E-4 7 1.7471620628218326E-4 8 0.0 9 0.0015724458565396495 10 6.551857735581872E-4 11 4.3679051570545814E-5 12 1.7471620628218326E-4 13 2.620743094232749E-4 14 2.183952578527291E-4 15 0.003931114641349124 16 0.0010046181861225539 17 0.0 18 1.3103715471163746E-4 19 4.3679051570545814E-5 20 6.115067219876415E-4 21 0.0 22 4.8046956727600397E-4 23 7.862229282698248E-4 24 3.931114641349124E-4 25 0.002140273526956745 26 0.005066769982183315 27 0.005547239549459319 28 0.004193188950772399 29 0.002708101197373841 30 0.003712719383496395 31 0.007905908334268793 32 0.0025333849910916576 33 0.004149509899201853 34 0.0030138545583676614 35 0.0032322498162203903 36 0.007993266437409885 37 0.003800077486637486 38 0.007993266437409885 39 0.0036690403319258485 40 0.002577064042662203 41 0.0035816822287847573 42 0.0020092363722451077 43 0.0017908411143923786 44 0.001223013443975283 45 0.0015724458565396495 46 0.0010482972376930997 47 0.002183952578527291 48 0.0018345201659629243 49 3.931114641349124E-4 50 0.0013540505986869204 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2289427.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Deduplicated Percentage 70.07428743233177 #Duplication Level Percentage of deduplicated Percentage of total 1 76.76718558523066 53.79405828070609 2 15.05203660975 21.09521479667204 3 4.658148578001129 9.792493270720758 4 1.7792706402337994 4.98724489054609 5 0.7690038030338586 2.694369676517543 6 0.35623484128815364 1.4977741597102299 7 0.19424428596507565 0.9528070948763332 8 0.10855161293976713 0.6085341541107574 9 0.06544889007963947 0.41276559020109704 >10 0.23200481923240854 2.732534308318117 >50 0.012896300363456466 0.6038932362634529 >100 0.004534128248959985 0.570912825319666 >500 3.1421830935842815E-4 0.15505515109853815 >1k 1.2568732374280264E-4 0.10234256493943387 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 4.367905157054582E-5 0.0 3 0.0 0.0 0.0 4.367905157054582E-5 0.0 4 0.0 0.0 0.0 8.735810314109164E-5 0.0 5 0.0 0.0 0.0 8.735810314109164E-5 0.0 6 0.0 0.0 0.0 8.735810314109164E-5 0.0 7 0.0 0.0 0.0 1.3103715471163746E-4 0.0 8 0.0 0.0 0.0 1.7471620628218328E-4 0.0 9 0.0 0.0 0.0 2.1839525785272908E-4 0.0 10 0.0 0.0 0.0 2.620743094232749E-4 0.0 11 0.0 0.0 0.0 3.0575336099382074E-4 0.0 12 0.0 0.0 0.0 3.4943241256436657E-4 0.0 13 0.0 0.0 0.0 5.241486188465498E-4 0.0 14 0.0 0.0 0.0 5.241486188465498E-4 0.0 15 0.0 0.0 0.0 5.678276704170957E-4 0.0 16 0.0 0.0 0.0 5.678276704170957E-4 0.0 17 0.0 0.0 0.0 6.551857735581873E-4 0.0 18 0.0 0.0 0.0 6.988648251287331E-4 0.0 19 0.0 0.0 0.0 7.42543876699279E-4 0.0 20 0.0 0.0 0.0 8.735810314109163E-4 0.0 21 0.0 0.0 0.0 9.172600829814621E-4 0.0 22 0.0 0.0 0.0 0.0013103715471163746 0.0 23 0.0 0.0 0.0 0.0017034830112512868 0.0 24 0.0 0.0 0.0 0.0024897059395211116 0.0 25 0.0 0.0 0.0 0.002708101197373841 0.0 26 0.0 0.0 0.0 0.0032759288677909363 0.0 27 0.0 0.0 0.0 0.0039747936929196695 0.0 28 0.0 0.0 0.0 0.007425438766992789 0.0 29 0.0 0.0 0.0 0.014239370811997937 0.0 30 0.0 0.0 0.0 0.03319607919361482 0.0 31 0.0 0.0 0.0 0.08425689047958289 0.0 32 0.0 0.0 0.0 0.14885820775242015 0.0 33 0.0 0.0 0.0 0.21664809578990726 0.0 34 0.0 0.0 0.0 0.29474623999804317 0.0 35 0.0 0.0 0.0 0.3813617992624355 0.0 36 0.0 0.0 0.0 0.49855269462621 0.0 37 0.0 0.0 0.0 0.6778988803748711 0.0 38 0.0 0.0 0.0 0.9236372245107619 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GACGGCG 30 1.3017915E-4 36.665264 7 GTATCAA 4420 0.0 29.217354 1 GGTATCA 1570 0.0 28.586142 1 CGGCCGC 75 2.0659045E-6 23.466284 39 ACGGCCG 75 2.0659045E-6 23.466284 38 CGCGGTA 75 2.0662974E-6 23.46577 43 GGCCGCG 80 3.6183992E-6 21.99964 40 CCGCGGT 80 3.619085E-6 21.999157 42 GTAGGAC 2105 0.0 20.901815 3 TAGGACC 900 0.0 20.776983 4 TAGGACG 1815 0.0 20.605272 4 AGGACGT 1845 0.0 20.031754 5 TATCAAC 6440 0.0 20.017868 2 GGACGTG 1825 0.0 19.88965 6 ATCAACG 6540 0.0 19.64451 3 TCAACGC 6620 0.0 19.407112 4 TACCGCG 80 8.995687E-5 19.249262 8 GACGTGG 945 0.0 18.856422 7 CAACGCA 6845 0.0 18.833466 5 GCCGCGG 95 1.5983525E-5 18.52601 41 >>END_MODULE