##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063923_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4896322 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.3413078224839 32.0 32.0 32.0 32.0 32.0 2 31.44185349738028 32.0 32.0 32.0 32.0 32.0 3 31.506049847211845 32.0 32.0 32.0 32.0 32.0 4 31.585797257615003 32.0 32.0 32.0 32.0 32.0 5 31.543390528645787 32.0 32.0 32.0 32.0 32.0 6 35.145521475099066 36.0 36.0 36.0 36.0 36.0 7 35.159938623317665 36.0 36.0 36.0 36.0 36.0 8 35.10883271157412 36.0 36.0 36.0 36.0 36.0 9 35.20244134270581 36.0 36.0 36.0 36.0 36.0 10 35.070970822588876 36.0 36.0 36.0 36.0 36.0 11 35.20545033598689 36.0 36.0 36.0 36.0 36.0 12 35.11119816057849 36.0 36.0 36.0 36.0 36.0 13 35.15518750605046 36.0 36.0 36.0 36.0 36.0 14 35.09693582243978 36.0 36.0 36.0 36.0 36.0 15 35.07173874594032 36.0 36.0 36.0 36.0 36.0 16 35.08663502931384 36.0 36.0 36.0 36.0 36.0 17 35.051571567392834 36.0 36.0 36.0 36.0 36.0 18 35.04657863596389 36.0 36.0 36.0 36.0 36.0 19 35.048324027708965 36.0 36.0 36.0 36.0 36.0 20 35.0401977239242 36.0 36.0 36.0 36.0 36.0 21 35.036915055831706 36.0 36.0 36.0 36.0 36.0 22 35.02155168716437 36.0 36.0 36.0 36.0 36.0 23 34.967604459020464 36.0 36.0 36.0 36.0 36.0 24 34.942952485559566 36.0 36.0 36.0 36.0 36.0 25 34.91803949985316 36.0 36.0 36.0 32.0 36.0 26 34.858054270123574 36.0 36.0 36.0 32.0 36.0 27 34.853479611839255 36.0 36.0 36.0 32.0 36.0 28 34.835338852305874 36.0 36.0 36.0 32.0 36.0 29 34.809898123530274 36.0 36.0 36.0 32.0 36.0 30 34.79319701604592 36.0 36.0 36.0 32.0 36.0 31 34.78815220894378 36.0 36.0 36.0 32.0 36.0 32 34.75615941925388 36.0 36.0 36.0 32.0 36.0 33 34.73306657527834 36.0 36.0 36.0 32.0 36.0 34 34.73048116525016 36.0 36.0 36.0 32.0 36.0 35 34.69560519099847 36.0 36.0 36.0 32.0 36.0 36 34.67524705278779 36.0 36.0 36.0 32.0 36.0 37 34.67076695527786 36.0 36.0 36.0 32.0 36.0 38 34.63306967964934 36.0 36.0 36.0 32.0 36.0 39 34.638400211424006 36.0 36.0 36.0 32.0 36.0 40 34.62150896121619 36.0 36.0 36.0 32.0 36.0 41 34.60979322846823 36.0 36.0 36.0 32.0 36.0 42 34.54510753173505 36.0 36.0 36.0 32.0 36.0 43 34.53715523611397 36.0 36.0 36.0 32.0 36.0 44 34.48945698424246 36.0 36.0 36.0 32.0 36.0 45 34.46623935272231 36.0 36.0 36.0 32.0 36.0 46 34.45017423282211 36.0 36.0 36.0 32.0 36.0 47 34.43282651753704 36.0 36.0 36.0 32.0 36.0 48 34.38763688335857 36.0 36.0 36.0 32.0 36.0 49 34.377566671473 36.0 36.0 36.0 32.0 36.0 50 33.78929633304345 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 14 1.0 15 1.0 16 0.0 17 6.0 18 11.0 19 14.0 20 38.0 21 146.0 22 500.0 23 1556.0 24 3893.0 25 8760.0 26 17628.0 27 31457.0 28 52130.0 29 80223.0 30 114899.0 31 162893.0 32 234400.0 33 379985.0 34 807374.0 35 3000407.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.9833345180058 17.407066530388484 11.528619644157073 27.08097930744865 2 16.581166661492688 19.682674413475002 36.153676166636984 27.582482758395326 3 18.261273241240797 23.195257160141306 28.619549386915487 29.92392021170241 4 12.529997005915869 15.505352793382462 35.16941900471415 36.79523119598752 5 14.608536775154901 36.270102333955975 33.361776451793816 15.759584439095303 6 35.511011852791334 35.08791815886029 16.0507647077445 13.350305280603884 7 31.117816381874203 30.026812005929358 20.274332896133703 18.581038716062736 8 28.703667773483854 32.65847303343203 18.683391329246728 19.954467863837387 9 27.520123489972363 13.823855230146718 17.892055745314593 40.763965534566324 10 15.695519242198653 26.581397676190242 31.49877355619686 26.224309525414245 11 37.99432267614807 20.653547837243515 21.998598539597385 19.35353094701103 12 24.880021992053614 23.288232739975417 28.296469548317365 23.5352757196536 13 29.68819918881588 19.01242142279301 24.968042188600002 26.331337199791104 14 23.8428948796993 19.012710377643263 24.677359336022974 32.46703540663446 15 25.616579815617342 26.868039644436966 21.632406218635893 25.882974321309803 16 26.389427563257733 25.465460607943296 22.929882059416958 25.215229769382013 17 24.705401319602753 25.6361816073371 24.493548422673182 25.164868650386964 18 25.421082406955442 24.705441444679767 25.22087041057449 24.652605737790296 19 25.884087256534038 24.63135076315462 24.845123512122676 24.639438468188665 20 26.262034388957662 24.048783147862633 24.249731581990495 25.439450881189213 21 27.165513215838338 23.87163262546867 24.105685859712658 24.857168298980337 22 26.36444476395917 23.806152955059666 24.48272312600867 25.346679154972495 23 25.089767000994833 23.71435743043657 24.993408270389377 26.20246729817921 24 25.263888415174502 24.464732809086385 24.636985572554586 25.63439320318453 25 25.376474403907018 23.99107800799638 24.856664820342893 25.775782767753707 26 25.23959586254817 24.77669275500673 24.944889326247633 25.038822056197468 27 25.77995605812321 24.310515515379556 24.37528250027114 25.534245926226095 28 25.300805681908933 24.20503580297874 25.055651425491426 25.438507089620906 29 25.107292587237712 24.47408608038371 24.927744853090903 25.490876479287678 30 25.018254216749597 24.600577313220302 25.13986048978693 25.241307980243167 31 25.599091984376475 24.38169826454554 24.293931863288666 25.725277887789318 32 25.441632531016197 24.333966755934046 24.16561005458981 26.05879065845995 33 25.07322684421253 24.199304464973764 24.628422656705244 26.099046034108465 34 25.644237462052015 24.149683344716365 24.85809333651405 25.34798585671757 35 26.00072219803095 24.042822095011523 24.920550046934704 25.035905660022827 36 25.10061397811248 24.567723460663323 24.57511734212429 25.75654521909991 37 25.974958594857856 24.230377005844 24.53326922829475 25.261395171003393 38 25.263290550789 24.167868687450493 24.820963242469958 25.747877519290547 39 25.82417010085768 24.15666160890683 24.288929960068277 25.73023833016721 40 25.898849027185538 24.333269474364435 24.756556403059836 25.011325095390184 41 25.030360490228475 24.67181464027159 25.043227701021575 25.254597168478355 42 26.14214799738983 24.55768565030069 24.588403130160216 24.711763222149262 43 25.5172775786575 23.814201822248375 24.796564070650675 25.87195652844345 44 25.085442941026297 24.26638754148583 24.709706407965278 25.93846310952259 45 25.210400688036337 24.481047037397783 24.805499225632335 25.503053048933545 46 25.110517689468015 24.244246901981608 24.912571291440944 25.732664117109433 47 25.201910531944183 24.22971315878264 25.135777990730823 25.432598318542354 48 25.864276150087534 24.755077165398074 24.276852668049496 25.103794016464892 49 25.110425196490166 24.62381295594368 24.57395899475951 25.69180285280664 50 25.080040749503297 24.83989807722472 24.62779723936003 25.45226393391195 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 47.0 1 84.0 2 121.0 3 306.5 4 492.0 5 595.0 6 698.0 7 637.5 8 577.0 9 767.5 10 958.0 11 1425.0 12 1892.0 13 3453.0 14 5014.0 15 6523.5 16 8033.0 17 8057.5 18 8082.0 19 8160.5 20 8239.0 21 9633.5 22 11028.0 23 13134.0 24 15240.0 25 19503.5 26 23767.0 27 29547.0 28 35327.0 29 41265.5 30 47204.0 31 53980.0 32 60756.0 33 70786.0 34 80816.0 35 95064.0 36 109312.0 37 131644.5 38 153977.0 39 174566.0 40 195155.0 41 216651.0 42 238147.0 43 249216.5 44 260286.0 45 287545.0 46 314804.0 47 337737.0 48 360670.0 49 376961.0 50 393252.0 51 390208.0 52 387164.0 53 383463.0 54 379762.0 55 380280.5 56 380799.0 57 369145.5 58 357492.0 59 329543.5 60 301595.0 61 264363.5 62 227132.0 63 197246.0 64 167360.0 65 143021.5 66 118683.0 67 101262.0 68 83841.0 69 74504.0 70 65167.0 71 49784.5 72 34402.0 73 29249.5 74 24097.0 75 18437.5 76 12778.0 77 10864.0 78 8950.0 79 7432.5 80 5915.0 81 4679.5 82 3444.0 83 2796.0 84 2148.0 85 1471.5 86 795.0 87 561.0 88 327.0 89 260.5 90 194.0 91 168.0 92 142.0 93 109.5 94 77.0 95 77.0 96 77.0 97 57.5 98 38.0 99 43.5 100 49.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009272265998845664 2 5.310108281277253E-4 3 3.063524008429184E-4 4 0.0 5 0.0 6 1.4296445372669525E-4 7 1.6338794711622315E-4 8 0.0 9 0.0011028686430345064 10 0.0010620216562554506 11 2.0423493389527894E-5 12 1.6338794711622315E-4 13 4.697403479591416E-4 14 1.6338794711622315E-4 15 0.004084698677905578 16 8.782102157496995E-4 17 0.0 18 2.4508192067433475E-4 19 2.0423493389527894E-5 20 8.373632289706437E-4 21 0.0 22 1.6338794711622315E-4 23 7.148222686334763E-4 24 5.922813082963089E-4 25 0.0021648902992899566 26 0.005412225748224892 27 0.00631085945736412 28 0.004513592039085665 29 0.002675477634028154 30 0.0039417342241788835 31 0.007577116047514849 32 0.003471993876219742 33 0.004799520946539055 34 0.0029818300348710726 35 0.003226911955545407 36 0.007801774474799655 37 0.0039008872373998277 38 0.008169397355811157 39 0.004391051078748497 40 0.0023691252331852356 41 0.0031860649687663516 42 0.001776843924888927 43 0.0012866800835402573 44 0.0014704915240460084 45 0.0014092210438774247 46 9.59904189307811E-4 47 0.001919808378615622 48 0.001756420431499399 49 4.2889336118008575E-4 50 0.001347950563708841 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 4896322.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.17205094338471 #Duplication Level Percentage of deduplicated Percentage of total 1 70.2769214012456 29.63721909477573 2 14.929913864144718 12.592501761181135 3 5.643714797264549 7.140210838205241 4 2.7655864896633244 4.665218173216729 5 1.597418681829825 3.3683211014020915 6 0.981321913967701 2.483061464862341 7 0.6887036760761166 2.0330832558664818 8 0.48364563282828493 1.6317062612943978 9 0.3650630623019401 1.38559122548509 >10 2.0218761951224176 15.5905311592462 >50 0.14547201060935389 4.214437041474213 >100 0.08249344943602056 6.703076820845653 >500 0.01054553747275389 3.0544709516695985 >1k 0.007323288037342327 5.500570850475014 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.169397355811157E-5 2 0.0 0.0 0.0 0.0 1.0211746694763947E-4 3 0.0 0.0 0.0 0.0 1.0211746694763947E-4 4 0.0 0.0 0.0 0.0 1.0211746694763947E-4 5 0.0 0.0 0.0 0.0 1.2254096033716738E-4 6 0.0 0.0 0.0 0.0 1.2254096033716738E-4 7 0.0 0.0 0.0 0.0 1.2254096033716738E-4 8 0.0 0.0 0.0 0.0 1.2254096033716738E-4 9 0.0 0.0 0.0 2.0423493389527894E-5 1.2254096033716738E-4 10 0.0 0.0 0.0 2.0423493389527894E-5 1.2254096033716738E-4 11 0.0 0.0 0.0 2.0423493389527894E-5 1.2254096033716738E-4 12 0.0 0.0 0.0 4.084698677905579E-5 2.6550541406386265E-4 13 0.0 0.0 0.0 4.084698677905579E-5 3.063524008429184E-4 14 0.0 0.0 0.0 4.084698677905579E-5 3.063524008429184E-4 15 0.0 0.0 0.0 8.169397355811157E-5 4.288933611800858E-4 16 0.0 0.0 0.0 1.0211746694763947E-4 4.288933611800858E-4 17 0.0 0.0 0.0 1.0211746694763947E-4 4.288933611800858E-4 18 0.0 0.0 0.0 1.2254096033716738E-4 4.493168545696137E-4 19 0.0 0.0 0.0 1.2254096033716738E-4 4.493168545696137E-4 20 0.0 0.0 0.0 1.6338794711622315E-4 4.901638413486695E-4 21 0.0 0.0 0.0 1.6338794711622315E-4 5.105873347381974E-4 22 0.0 0.0 0.0 2.8592890745339055E-4 5.514343215172532E-4 23 0.0 0.0 0.0 4.901638413486695E-4 5.718578149067811E-4 24 0.0 0.0 0.0 6.739752818544205E-4 6.127048016858368E-4 25 0.0 0.0 0.0 7.7609274880206E-4 6.127048016858368E-4 26 0.0 0.0 0.0 9.80327682697339E-4 6.127048016858368E-4 27 0.0 0.0 0.0 0.001347950563708841 6.331282950753647E-4 28 0.0 0.0 0.0 0.0031860649687663516 6.535517884648926E-4 29 0.0 0.0 0.0 0.007005258232608068 6.535517884648926E-4 30 0.0 0.0 0.0 0.013908398998268496 6.535517884648926E-4 31 0.0 0.0 0.0 0.0358023839118424 6.739752818544205E-4 32 0.0 0.0 0.0 0.059309824803189005 6.739752818544205E-4 33 0.0 0.0 0.0 0.08426733372519209 6.739752818544205E-4 34 0.0 0.0 0.0 0.11406521058051329 7.148222686334763E-4 35 0.0 0.0 0.0 0.1498063240121871 7.148222686334763E-4 36 0.0 0.0 0.0 0.2006199755653325 7.148222686334763E-4 37 0.0 0.0 0.0 0.2790257666877301 7.148222686334763E-4 38 0.0 0.0 0.0 0.38978237133913984 7.352457620230042E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5815 0.0 27.31753 1 GGTATCA 2445 0.0 24.386213 1 TCAACGC 8355 0.0 18.931223 4 CAACGCA 8530 0.0 18.465654 5 TATCAAC 8720 0.0 18.3154 2 AACGCAG 8600 0.0 18.315351 6 ATCAACG 8830 0.0 17.96267 3 CGGATCG 290 0.0 16.690685 26 ATACCGT 1060 0.0 16.18786 6 ATACGAA 1090 0.0 15.944309 40 CGCGAAA 85 0.0029822777 15.528943 14 ACCGTCG 1020 0.0 15.528785 8 TTAACGG 485 0.0 15.423633 35 TACCGTC 1105 0.0 15.329698 7 ACGCAGA 10370 0.0 15.253 7 CGTCGTA 1055 0.0 15.222445 10 CGCAATA 1160 0.0 15.17335 36 TAACGGC 495 0.0 15.112044 36 CGCAGAG 10555 0.0 14.985658 8 CTAGCGG 1175 0.0 14.979342 29 >>END_MODULE