FastQCFastQC Report
Thu 2 Feb 2017
SRR4063922_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063922_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2114358
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGGAT602.871748E-422.00228321
TGTAGGA26550.021.5408882
GTAGGAC27450.020.7544943
CTGTAGG28500.020.1465991
GTATCAA44800.020.133161
GTCCTAC24100.019.2606751
GATATAC18250.019.1663911
TTAACGG1851.8189894E-1219.02900135
TAGGACC18000.018.5753124
GTCCTAA13800.018.4920481
ATACACT18450.018.479934
ACTGTTC17550.018.4249068
CGGATAC600.007410468518.334825
TAGCGAT600.00741350218.33350238
TAGGACG26000.018.2744964
TTAGGAC15750.017.8765683
TCCTACA26750.017.5972462
TGGCGAG31750.017.4607518
AGGACGT26700.017.3834615
TAGGACA10150.017.3375994
Produced by FastQC (version 0.11.5)