##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063921_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 9450162 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.363802334817116 32.0 32.0 32.0 32.0 32.0 2 31.39507788332094 32.0 32.0 32.0 32.0 32.0 3 31.467984040908505 32.0 32.0 32.0 32.0 32.0 4 31.55190535358018 32.0 32.0 32.0 32.0 32.0 5 31.492425844128388 32.0 32.0 32.0 32.0 32.0 6 35.091403829902596 36.0 36.0 36.0 36.0 36.0 7 35.10949494834057 36.0 36.0 36.0 36.0 36.0 8 35.048496523128385 36.0 36.0 36.0 36.0 36.0 9 35.1661931298109 36.0 36.0 36.0 36.0 36.0 10 35.01605951305385 36.0 36.0 36.0 36.0 36.0 11 35.16542922756245 36.0 36.0 36.0 36.0 36.0 12 35.062705380077084 36.0 36.0 36.0 36.0 36.0 13 35.112426220841506 36.0 36.0 36.0 36.0 36.0 14 35.05526212143241 36.0 36.0 36.0 36.0 36.0 15 35.02136270256531 36.0 36.0 36.0 36.0 36.0 16 35.033914762519416 36.0 36.0 36.0 36.0 36.0 17 34.99474728581372 36.0 36.0 36.0 36.0 36.0 18 34.99619054149548 36.0 36.0 36.0 36.0 36.0 19 35.00089765656927 36.0 36.0 36.0 36.0 36.0 20 34.991615805104715 36.0 36.0 36.0 36.0 36.0 21 34.988305808937454 36.0 36.0 36.0 36.0 36.0 22 34.972952209708154 36.0 36.0 36.0 36.0 36.0 23 34.91377703366355 36.0 36.0 36.0 32.0 36.0 24 34.88830625337428 36.0 36.0 36.0 32.0 36.0 25 34.85795915456264 36.0 36.0 36.0 32.0 36.0 26 34.79849879822166 36.0 36.0 36.0 32.0 36.0 27 34.79919328367069 36.0 36.0 36.0 32.0 36.0 28 34.77678816511294 36.0 36.0 36.0 32.0 36.0 29 34.74727925299058 36.0 36.0 36.0 32.0 36.0 30 34.73370223706218 36.0 36.0 36.0 32.0 36.0 31 34.73234342437728 36.0 36.0 36.0 32.0 36.0 32 34.697568147509 36.0 36.0 36.0 32.0 36.0 33 34.67255968733658 36.0 36.0 36.0 32.0 36.0 34 34.668065267029284 36.0 36.0 36.0 32.0 36.0 35 34.63097733139389 36.0 36.0 36.0 32.0 36.0 36 34.608468087637014 36.0 36.0 36.0 32.0 36.0 37 34.60385726720875 36.0 36.0 36.0 32.0 36.0 38 34.56527105037988 36.0 36.0 36.0 32.0 36.0 39 34.57012842742802 36.0 36.0 36.0 32.0 36.0 40 34.54696893026807 36.0 36.0 36.0 32.0 36.0 41 34.53773808322016 36.0 36.0 36.0 32.0 36.0 42 34.46390252357579 36.0 36.0 36.0 32.0 36.0 43 34.460108726178454 36.0 36.0 36.0 32.0 36.0 44 34.39962140331563 36.0 36.0 36.0 32.0 36.0 45 34.38107579531441 36.0 36.0 36.0 32.0 36.0 46 34.35830359310243 36.0 36.0 36.0 32.0 36.0 47 34.34075098395139 36.0 36.0 36.0 32.0 36.0 48 34.294082048540545 36.0 36.0 36.0 32.0 36.0 49 34.28622736837739 36.0 36.0 36.0 32.0 36.0 50 33.67116997571047 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 5.0 19 28.0 20 79.0 21 319.0 22 816.0 23 2572.0 24 6517.0 25 15025.0 26 31302.0 27 58427.0 28 98601.0 29 156036.0 30 232885.0 31 337980.0 32 498367.0 33 819042.0 34 1708206.0 35 5483951.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.162731267034225 18.10729363836146 12.113098053857204 26.616877040747106 2 16.24201742349536 19.906428632123234 36.638143903676074 27.213410040705334 3 18.326675225277274 23.253685768622066 28.50216272111331 29.917476284987345 4 12.402073107318161 15.546484811583126 35.47385748519443 36.577584595904284 5 14.64592882111439 36.15572939384531 33.139029785944416 16.059311999095886 6 35.10949730802959 35.39914377997111 16.07265965661253 13.418699255386771 7 31.192014184739385 30.11488910870889 20.090969926845652 18.602126779706072 8 28.434753651286997 32.688660013305594 18.892524688203725 19.98406164720368 9 27.156805820413034 14.354430468153028 18.344419516889378 40.14434419454456 10 15.816553933934951 26.187355027682308 30.963505070856545 27.032585967526202 11 37.74005942756525 21.122774640852644 22.07855740008635 19.058608531495764 12 25.036917407334002 23.45152441511769 27.992055998270505 23.519502179277808 13 28.93402245303871 19.193621163066222 25.448703106964523 26.423653276930548 14 23.76607171276967 19.485343292123382 24.71818418851607 32.03040080659088 15 25.34303023889521 27.271843170454247 21.761295272361703 25.623831318288843 16 26.32443656116013 25.882620850120645 23.126902229755597 24.666040358963627 17 24.327934730424168 26.083936559387716 24.636321010827224 24.951807699360888 18 25.146027045333646 25.00262165622431 25.60236982908071 24.24898146936133 19 25.55872093540043 24.855018266365125 25.324745961865602 24.26151483636884 20 26.027965203758143 24.020769725106643 24.62603309742404 25.325231973711183 21 27.087958915413303 24.136580939035753 24.254811716455233 24.52064842909571 22 26.164023605122967 23.965032520111844 24.9318741116545 24.939069763110687 23 24.477560862873773 24.009988893234524 25.427276082697997 26.08517416119371 24 24.746894721643187 24.834195209605298 25.162815410049333 25.25609465870218 25 25.02914028256365 24.20068323975815 25.230135480753024 25.54004099692518 26 24.778497438798095 25.288335618246784 25.389249248518336 24.543917694436786 27 25.525486595958018 24.543304857625873 24.716815306508494 25.21439323990762 28 24.80013816197587 24.34883655467885 25.628358676785844 25.222666606559436 29 24.632349323037673 24.75626551928664 25.612758182992795 24.998626974682896 30 24.64037701430936 24.910223224192357 25.67178213950372 24.777617621994562 31 25.281327173428085 24.670860752785124 24.659664388449922 25.38814768533687 32 25.10078494583603 24.72534938216839 24.409533976505806 25.76433169548978 33 24.69919558675922 24.431653975848025 25.052422049483873 25.81672838790888 34 25.49709086314517 24.54604195057674 25.117625807391036 24.83924137888706 35 25.925390155789295 24.284776556398235 25.239571850602534 24.550261437209937 36 24.702681171352584 24.916725329680496 24.937065133512505 25.44352836545442 37 25.879676137506635 24.673430045652754 24.761071991583325 24.685821825257285 38 24.946758591963185 24.204013964043476 25.288028503784147 25.56119894020919 39 25.70498478106759 24.54114360570441 24.34740288704148 25.40646872618652 40 25.648782583574693 24.703124785051315 24.971010367272562 24.677082264101426 41 24.573913871648756 25.150356883971703 25.567083075392734 24.70864616898681 42 26.180051638155344 24.88885436797863 24.823065931611136 24.10802806225489 43 25.475609550910466 24.02562488948449 25.074087058550386 25.424678501054654 44 24.926349518097275 24.687250001058196 24.71332396476629 25.67307651607824 45 25.186165780162952 25.077647778396823 24.703480247977655 25.032706193462573 46 24.851030093661812 24.723930411892493 24.75677675376344 25.66826274068226 47 25.014486833806703 24.59288716565996 25.284636125443917 25.10798987508942 48 26.119174286277254 25.134386840661087 24.13048819899517 24.61595067406649 49 25.097673290528267 25.0573775357728 24.52964917825972 25.315299995439215 50 25.300353162451554 25.205813900086373 24.46518227114758 25.0286506663145 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 34.0 1 74.5 2 115.0 3 404.5 4 694.0 5 815.5 6 937.0 7 963.0 8 989.0 9 1308.0 10 1627.0 11 2584.5 12 3542.0 13 6380.5 14 9219.0 15 12293.0 16 15367.0 17 15556.5 18 15746.0 19 15974.5 20 16203.0 21 19293.0 22 22383.0 23 27121.5 24 31860.0 25 41018.0 26 50176.0 27 62954.5 28 75733.0 29 87177.5 30 98622.0 31 113068.0 32 127514.0 33 147495.0 34 167476.0 35 197698.5 36 227921.0 37 277661.5 38 327402.0 39 370954.5 40 414507.0 41 457578.0 42 500649.0 43 519402.0 44 538155.0 45 589057.5 46 639960.0 47 685429.0 48 730898.0 49 750943.0 50 770988.0 51 741938.5 52 712889.0 53 704545.5 54 696202.0 55 693883.5 56 691565.0 57 668218.5 58 644872.0 59 588695.5 60 532519.0 61 468838.0 62 405157.0 63 352254.5 64 299352.0 65 254438.0 66 209524.0 67 182840.0 68 156156.0 69 142131.0 70 128106.0 71 97592.0 72 67078.0 73 57278.5 74 47479.0 75 35787.0 76 24095.0 77 20970.5 78 17846.0 79 14952.5 80 12059.0 81 9742.0 82 7425.0 83 6102.5 84 4780.0 85 3407.0 86 2034.0 87 1458.5 88 883.0 89 703.0 90 523.0 91 433.5 92 344.0 93 263.0 94 182.0 95 183.5 96 185.0 97 144.5 98 104.0 99 95.0 100 86.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008507790660096621 2 5.18509629782008E-4 3 3.174548753767396E-4 4 0.0 5 0.0 6 2.222184127637177E-4 7 6.349097507534791E-5 8 1.0581829179224652E-5 9 0.0011745830388939366 10 8.677099926964215E-4 11 2.1163658358449304E-5 12 1.3756377932992047E-4 13 4.021095088105368E-4 14 1.9047292522604374E-4 15 0.004359713621840557 16 7.195643841872764E-4 17 1.0581829179224652E-5 18 3.068730461975149E-4 19 6.349097507534791E-5 20 6.454915799327037E-4 21 0.0 22 1.0581829179224653E-4 23 6.984007258288271E-4 24 4.5501865470666E-4 25 0.0019576383981565605 26 0.005259169102074652 27 0.006211533728204871 28 0.0040634224048222665 29 0.002402075223683996 30 0.003544912775040259 31 0.007047498233363619 32 0.0035766582625779324 33 0.0044126227677366795 34 0.0029629121701829028 35 0.0029946576577205767 36 0.007513098717249503 37 0.0036930583835494035 38 0.00793637188441849 39 0.004433786426095129 40 0.002454984369580119 41 0.0033015307039180914 42 0.001830656448005865 43 0.0013862196224784294 44 0.0012909831598654075 45 0.0012380740139692843 46 0.0010476010887432406 47 0.0021375294942033796 48 0.002158693152561829 49 3.7036402127286285E-4 50 0.0012698195015069583 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 9450162.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.437534259418985 #Duplication Level Percentage of deduplicated Percentage of total 1 58.56078928992009 14.310812945310387 2 14.654039942820809 7.162172062831555 3 7.76512161002725 5.692812761207869 4 4.566956575180879 4.464206310690462 5 3.0043270681832643 3.6709172827614163 6 2.1178617226011243 3.105319104166625 7 1.5872796089167012 2.715243987552534 8 1.1908803003119417 2.32817425101922 9 0.9091265956451926 1.999513109450551 >10 5.010078565555834 21.862375172527926 >50 0.3558726594587599 6.032860150794187 >100 0.23918325168978982 11.154270459451453 >500 0.018610662690549732 3.1094073659915034 >1k 0.0178675006284806 8.739121607434708 >5k 0.0017431707560338725 2.9443222182918545 >10k+ 2.614756134050809E-4 0.7084712105178341 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 13939 0.14750011692921242 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 10995 0.11634721182557504 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 10851 0.1148234284237667 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 10425 0.110315569193417 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 10293 0.10891876774175935 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 10022 0.10605109203418947 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 9934 0.1051198910664177 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 9926 0.10503523643298389 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 9658 0.10219930621295169 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 9616 0.10175486938742426 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 9.523646261302187E-5 2 0.0 0.0 0.0 0.0 9.523646261302187E-5 3 0.0 0.0 0.0 0.0 9.523646261302187E-5 4 0.0 0.0 0.0 1.0581829179224652E-5 9.523646261302187E-5 5 0.0 0.0 0.0 1.0581829179224652E-5 9.523646261302187E-5 6 0.0 0.0 0.0 1.0581829179224652E-5 1.2698195015069583E-4 7 0.0 0.0 0.0 1.0581829179224652E-5 1.2698195015069583E-4 8 0.0 0.0 0.0 2.1163658358449304E-5 1.2698195015069583E-4 9 0.0 0.0 0.0 2.1163658358449304E-5 1.2698195015069583E-4 10 0.0 0.0 0.0 2.1163658358449304E-5 1.3756377932992047E-4 11 0.0 0.0 0.0 2.1163658358449304E-5 1.3756377932992047E-4 12 0.0 0.0 0.0 3.174548753767396E-5 3.174548753767396E-4 13 0.0 0.0 0.0 3.174548753767396E-5 3.7036402127286285E-4 14 0.0 0.0 0.0 3.174548753767396E-5 3.7036402127286285E-4 15 0.0 0.0 0.0 3.174548753767396E-5 4.656004838858847E-4 16 0.0 0.0 0.0 3.174548753767396E-5 4.7618231306510933E-4 17 0.0 0.0 0.0 3.174548753767396E-5 4.973459714235586E-4 18 0.0 0.0 0.0 5.2909145896123265E-5 5.079278006027833E-4 19 0.0 0.0 0.0 5.2909145896123265E-5 5.079278006027833E-4 20 0.0 0.0 0.0 5.2909145896123265E-5 6.349097507534791E-4 21 0.0 0.0 0.0 5.2909145896123265E-5 6.454915799327038E-4 22 0.0 0.0 0.0 6.349097507534791E-5 6.772370674703777E-4 23 0.0 0.0 0.0 6.349097507534791E-5 6.772370674703777E-4 24 0.0 0.0 0.0 7.407280425457257E-5 6.772370674703777E-4 25 0.0 0.0 0.0 8.465463343379722E-5 6.772370674703777E-4 26 0.0 0.0 0.0 8.465463343379722E-5 7.724735300833997E-4 27 0.0 0.0 0.0 1.3756377932992047E-4 7.724735300833997E-4 28 0.0 0.0 0.0 5.396732881404573E-4 7.724735300833997E-4 29 0.0 0.0 0.0 0.0013227286474030815 7.724735300833997E-4 30 0.0 0.0 0.0 0.0026666209531646125 7.724735300833997E-4 31 0.0 0.0 0.0 0.007153316525155865 8.042190176210736E-4 32 0.0 0.0 0.0 0.013015649890446323 8.148008468002982E-4 33 0.0 0.0 0.0 0.019322420081264214 8.148008468002982E-4 34 0.0 0.0 0.0 0.026528645752316202 8.465463343379722E-4 35 0.0 0.0 0.0 0.035851237259213124 8.571281635171968E-4 36 0.0 0.0 0.0 0.05131128969006034 8.571281635171968E-4 37 0.0 0.0 0.0 0.0768769889870671 8.571281635171968E-4 38 0.0 0.0 0.0 0.11411444586875866 9.206191385925448E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 12160 0.0 27.970499 1 GGTATCA 4715 0.0 26.829369 1 TCAACGC 17915 0.0 18.60341 4 ATCAACG 18300 0.0 18.296078 3 CAACGCA 18590 0.0 17.95159 5 CGTCGTA 3105 0.0 17.925898 10 AACGCAG 18815 0.0 17.760393 6 TATCAAC 19140 0.0 17.745596 2 ACCGTCG 3140 0.0 17.375034 8 CCGTCGT 3180 0.0 16.949928 9 ATACCGT 3260 0.0 16.802767 6 CGCAATA 3050 0.0 16.735195 36 TACCGTC 3355 0.0 16.326979 7 TCTAGCG 3100 0.0 16.323418 28 CTAGCGG 3110 0.0 16.27076 29 TAGATCG 475 0.0 16.209557 5 TATCGAG 320 0.0 15.812475 10 GTCGTAG 3445 0.0 15.709534 11 GGCGTTA 3360 0.0 15.648371 42 CGGTCCA 3475 0.0 15.510768 10 >>END_MODULE