FastQCFastQC Report
Thu 2 Feb 2017
SRR4063911_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063911_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1868356
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATATCGC300.005746163429.332966
GTATCAA41100.019.967821
TGTAGGA15600.019.8843612
TTGTCGG1352.6011548E-919.55478322
CTGTAGG15850.018.8787521
GTAGGAC15500.018.5933113
TCGCATT600.007415267618.3326118
CGGTACG851.4312087E-418.117938
GTCCTAG3900.018.0529841
TACCGTC4850.017.6904967
GTCCTAA9550.017.2791161
AACGCAG49150.017.0089386
TAGGACG12950.016.98824
GTCCTAC13600.016.3397751
CCGTCGT4900.016.1634929
ACCGTCG4900.016.163068
TCCTACA14300.016.1536392
CGTCGTA5250.015.92360710
CGAAATT1805.2714313E-915.88868513
GCGAAAT1805.2714313E-915.88868512
Produced by FastQC (version 0.11.5)