##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063910_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2766491 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.325253181738166 32.0 32.0 32.0 32.0 32.0 2 31.367428630709444 32.0 32.0 32.0 32.0 32.0 3 31.463399664050957 32.0 32.0 32.0 32.0 32.0 4 31.551115835909098 32.0 32.0 32.0 32.0 32.0 5 31.490418367527674 32.0 32.0 32.0 32.0 32.0 6 35.08391352077415 36.0 36.0 36.0 36.0 36.0 7 35.10427577751021 36.0 36.0 36.0 36.0 36.0 8 35.04332781129597 36.0 36.0 36.0 36.0 36.0 9 35.167469187501425 36.0 36.0 36.0 36.0 36.0 10 35.01281623544049 36.0 36.0 36.0 36.0 36.0 11 35.16680336209299 36.0 36.0 36.0 36.0 36.0 12 35.076358462760226 36.0 36.0 36.0 36.0 36.0 13 35.1119540963625 36.0 36.0 36.0 36.0 36.0 14 35.053971619643804 36.0 36.0 36.0 36.0 36.0 15 35.01972534882636 36.0 36.0 36.0 36.0 36.0 16 35.043264915736216 36.0 36.0 36.0 36.0 36.0 17 35.00415363722492 36.0 36.0 36.0 36.0 36.0 18 35.00590820646082 36.0 36.0 36.0 36.0 36.0 19 34.99677859064064 36.0 36.0 36.0 36.0 36.0 20 34.99303269014791 36.0 36.0 36.0 36.0 36.0 21 34.98565005272022 36.0 36.0 36.0 36.0 36.0 22 34.95976780694389 36.0 36.0 36.0 36.0 36.0 23 34.91476061190873 36.0 36.0 36.0 32.0 36.0 24 34.88425734983414 36.0 36.0 36.0 32.0 36.0 25 34.84732211310284 36.0 36.0 36.0 32.0 36.0 26 34.79927315866923 36.0 36.0 36.0 32.0 36.0 27 34.77549538386353 36.0 36.0 36.0 32.0 36.0 28 34.758611902225596 36.0 36.0 36.0 32.0 36.0 29 34.724920124446456 36.0 36.0 36.0 32.0 36.0 30 34.70407422254401 36.0 36.0 36.0 32.0 36.0 31 34.698843047022386 36.0 36.0 36.0 32.0 36.0 32 34.65971008038703 36.0 36.0 36.0 32.0 36.0 33 34.63812967401665 36.0 36.0 36.0 32.0 36.0 34 34.64089780158331 36.0 36.0 36.0 32.0 36.0 35 34.60691757175425 36.0 36.0 36.0 32.0 36.0 36 34.57848697140168 36.0 36.0 36.0 32.0 36.0 37 34.553784198105106 36.0 36.0 36.0 32.0 36.0 38 34.51409456961906 36.0 36.0 36.0 32.0 36.0 39 34.488831881253184 36.0 36.0 36.0 32.0 36.0 40 34.48287885266932 36.0 36.0 36.0 32.0 36.0 41 34.46300313284952 36.0 36.0 36.0 32.0 36.0 42 34.422795158198596 36.0 36.0 36.0 32.0 36.0 43 34.41033894561739 36.0 36.0 36.0 32.0 36.0 44 34.35223429246652 36.0 36.0 36.0 32.0 36.0 45 34.3297946749149 36.0 36.0 36.0 32.0 36.0 46 34.29388781673246 36.0 36.0 36.0 32.0 36.0 47 34.275325674292816 36.0 36.0 36.0 32.0 36.0 48 34.23466839400526 36.0 36.0 36.0 32.0 36.0 49 34.23445657332701 36.0 36.0 36.0 32.0 36.0 50 33.64411704213027 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 2.0 17 4.0 18 7.0 19 14.0 20 39.0 21 80.0 22 258.0 23 791.0 24 2152.0 25 5020.0 26 10013.0 27 18696.0 28 31120.0 29 47619.0 30 69631.0 31 99338.0 32 145231.0 33 238654.0 34 501382.0 35 1596440.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.74248998097778 18.34082967553768 12.705378206792039 26.211302136692506 2 15.514286044773208 20.270445143930402 38.132483347045124 26.082785464251273 3 18.18625769434722 24.284406279606678 28.749865804150332 28.779470221895775 4 12.47743079590716 16.47444361828757 36.10566598626202 34.94245959954325 5 14.386817090675516 36.94391198091734 33.434701215366324 15.234569713040816 6 33.70715360054886 36.10948349184397 16.864637783523545 13.318725124083628 7 30.318873604367703 30.39677020106359 20.565532906703375 18.718823287865337 8 27.79894378797682 33.90252630589664 18.875072745609057 19.42345716051748 9 27.314769798114053 14.383564862425416 18.352893206957766 39.94877213250277 10 15.883561109054737 27.03516112987554 31.435941331605978 25.64533642946375 11 37.02552224136803 20.750597598616874 23.100507538616636 19.123372621398456 12 25.350128158925017 23.19165063851737 29.21018605907058 22.24803514348703 13 29.82909310288862 20.071809742137745 24.991460257938165 25.107636897035473 14 23.502331299342885 19.80323031083148 25.047686900660516 31.646751489165126 15 25.16415096249362 28.373860775691924 21.586628763615384 24.875359498199074 16 25.38972103759815 25.818282241675846 24.353489253075946 24.438507467650066 17 23.824621153656384 26.339648312609725 25.163212170218518 24.67251836351537 18 24.468106256210504 25.35912926267756 26.577210125636054 23.595554355475887 19 26.13991013884019 24.487382929271387 24.919446663461642 24.45326026842678 20 26.443031330924487 24.39355886278099 24.880822767514392 24.282587038780136 21 26.71391304002073 23.777304896347033 24.421153005739036 25.087629057893196 22 26.235003114053146 24.820286782064354 24.591043310822265 24.35366679306023 23 24.66135446646294 25.024092143683884 24.993909187980893 25.320644201872284 24 25.399831337957018 24.74759432477167 25.074833389300988 24.777740947970326 25 25.160594192185275 24.733909403584743 25.249986896540506 24.855509507689472 26 24.383916100094567 25.376561989398283 25.760209142463843 24.47931276804331 27 25.284712431768064 25.309547048404006 24.944691465133932 24.461049054693994 28 24.41747060422559 25.04746268052447 25.12720576752902 25.407860947720923 29 24.972645220712494 24.652015036001313 24.946004358690832 25.429335384595365 30 24.625520085888727 24.96180915784946 25.333379121375664 25.079291634886154 31 25.355000591050093 24.46437666989726 24.68677056375334 25.493852175299313 32 24.969527183342972 25.300173510699825 24.53256940427993 25.197729901677267 33 24.3216835341319 25.331345651035235 25.35252863769899 24.99444217713387 34 25.251119137541135 24.83064730684033 25.47556115927612 24.442672396342417 35 25.193742546799502 24.958674160804417 25.22855276603882 24.619030526357264 36 24.56620829593308 25.06619980066856 25.190845213749892 25.176746689648468 37 25.603505521116233 24.717798971146035 24.380137356450433 25.2985581512873 38 25.03348380107025 24.890981081697582 24.875617394296928 25.19991772293524 39 25.85109974761076 24.305568107138544 24.823938443341834 25.01939370190886 40 26.158951888034437 24.655349039300585 24.946483219118416 24.23921585354657 41 25.28856998264893 24.738288027761712 25.68301764025448 24.290124349334878 42 25.746546912147284 25.239432526386828 24.976242003703682 24.037778557762206 43 24.697183569526956 24.7634780376982 25.466004203951282 25.073334188823566 44 24.45828569404316 25.076370466254755 25.155063404385913 25.310280435316173 45 24.728514883695713 25.40609806792098 24.96195485188599 24.903432196497317 46 25.03523454695367 24.61502258661879 25.082370581041992 25.26737228538555 47 25.342843076229038 24.68835240848662 25.069674735561335 24.899129779723005 48 25.020450522387495 25.103553926662965 24.46428306776271 25.411712483186832 49 25.041975738836257 24.821948765922315 24.916726279143994 25.21934921609743 50 24.733593402080935 25.778904935137042 24.353430825376076 25.134070837405943 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 14.0 1 20.0 2 26.0 3 90.0 4 154.0 5 179.0 6 204.0 7 206.5 8 209.0 9 281.5 10 354.0 11 522.5 12 691.0 13 1300.5 14 1910.0 15 2517.0 16 3124.0 17 3176.0 18 3228.0 19 3288.0 20 3348.0 21 4030.5 22 4713.0 23 5956.5 24 7200.0 25 9763.5 26 12327.0 27 17560.0 28 22793.0 29 29540.0 30 36287.0 31 44093.0 32 51899.0 33 63432.0 34 74965.0 35 89211.5 36 103458.0 37 112654.0 38 121850.0 39 127328.0 40 132806.0 41 139917.5 42 147029.0 43 148873.5 44 150718.0 45 159796.5 46 168875.0 47 178461.5 48 188048.0 49 198944.0 50 209840.0 51 209424.0 52 209008.0 53 205912.5 54 202817.0 55 196706.5 56 190596.0 57 182695.5 58 174795.0 59 159930.0 60 145065.0 61 128975.0 62 112885.0 63 97704.5 64 82524.0 65 70081.5 66 57639.0 67 51158.5 68 44678.0 69 39209.0 70 33740.0 71 26927.5 72 20115.0 73 18993.0 74 17871.0 75 14514.5 76 11158.0 77 8904.0 78 6650.0 79 5070.0 80 3490.0 81 3246.0 82 3002.0 83 2611.0 84 2220.0 85 1541.0 86 862.0 87 663.0 88 464.0 89 397.5 90 331.0 91 264.5 92 198.0 93 145.5 94 93.0 95 87.5 96 82.0 97 88.5 98 95.0 99 69.0 100 43.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009145158975756653 2 5.422031013294459E-4 3 4.337624810635567E-4 4 0.0 5 0.0 6 3.6146873421963056E-4 7 1.0844062026588917E-4 8 3.614687342196306E-5 9 0.0010121124558149655 10 9.759655823930025E-4 11 7.229374684392612E-5 12 1.4458749368785224E-4 13 5.060562279074828E-4 14 2.891749873757045E-4 15 0.004879827911965013 16 9.036718355490765E-4 17 0.0 18 2.891749873757045E-4 19 3.614687342196306E-5 20 8.313780887051503E-4 21 0.0 22 0.0 23 0.0010482593292369287 24 4.337624810635567E-4 25 0.0016627561774103007 26 0.00531359039302857 27 0.006904052823594944 28 0.003867715456150047 29 0.002313399899005636 30 0.00437377168405753 31 0.008241487140207577 32 0.0032893654813986387 33 0.004337624810635567 34 0.002711015506647229 35 0.0022411061521617095 36 0.008819837114958986 37 0.004048449823259862 38 0.008241487140207577 39 0.004662946671433235 40 0.002494134266115451 41 0.0032893654813986387 42 0.001951931164786005 43 0.0016627561774103007 44 0.0015181686837224485 45 0.0014820218103004854 46 0.0010844062026588918 47 0.002349546772427599 48 0.0020965186584738574 49 4.337624810635567E-4 50 0.0015543155571444115 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2766491.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.04893080202752 #Duplication Level Percentage of deduplicated Percentage of total 1 71.37319751006743 33.58032630770605 2 15.108633293235824 14.216900846533228 3 5.6457637504746625 7.968814440620332 4 2.652983957312192 4.992802345058819 5 1.4191991407119398 3.3385901082826486 6 0.8289039472035816 2.339942667210527 7 0.5533328402885586 1.8223602959258016 8 0.38116527199158196 1.434673480485435 9 0.27932767091073973 1.1827861433793818 >10 1.5407782933511878 13.423880644800093 >50 0.12429438100401505 4.0354632031612265 >100 0.08238327418358565 7.612984661719422 >500 0.0071800787816866316 2.3635065097732366 >1k 0.0028565904830228 1.6869683453438817 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 7.229374684392612E-5 2 0.0 0.0 0.0 0.0 7.229374684392612E-5 3 0.0 0.0 0.0 0.0 7.229374684392612E-5 4 0.0 0.0 0.0 0.0 7.229374684392612E-5 5 0.0 0.0 0.0 0.0 1.0844062026588917E-4 6 0.0 0.0 0.0 0.0 1.4458749368785224E-4 7 0.0 0.0 0.0 0.0 1.4458749368785224E-4 8 0.0 0.0 0.0 0.0 1.4458749368785224E-4 9 0.0 0.0 0.0 3.614687342196306E-5 1.4458749368785224E-4 10 0.0 0.0 0.0 7.229374684392612E-5 1.4458749368785224E-4 11 0.0 0.0 0.0 7.229374684392612E-5 1.4458749368785224E-4 12 0.0 0.0 3.614687342196306E-5 7.229374684392612E-5 2.891749873757045E-4 13 0.0 0.0 3.614687342196306E-5 7.229374684392612E-5 3.253218607976675E-4 14 0.0 0.0 3.614687342196306E-5 7.229374684392612E-5 3.253218607976675E-4 15 0.0 0.0 3.614687342196306E-5 1.0844062026588917E-4 7.952312152831873E-4 16 0.0 0.0 3.614687342196306E-5 1.8073436710981528E-4 9.036718355490764E-4 17 0.0 0.0 3.614687342196306E-5 1.8073436710981528E-4 9.036718355490764E-4 18 0.0 0.0 3.614687342196306E-5 2.1688124053177835E-4 9.759655823930025E-4 19 0.0 0.0 3.614687342196306E-5 2.530281139537414E-4 0.0010121124558149655 20 0.0 0.0 3.614687342196306E-5 3.6146873421963056E-4 0.001156699949502818 21 0.0 0.0 3.614687342196306E-5 5.060562279074828E-4 0.001228993696346744 22 0.0 0.0 3.614687342196306E-5 6.14496848173372E-4 0.001228993696346744 23 0.0 0.0 3.614687342196306E-5 9.036718355490764E-4 0.0013735811900345962 24 0.0 0.0 3.614687342196306E-5 0.001156699949502818 0.0013735811900345962 25 0.0 0.0 3.614687342196306E-5 0.0015904624305663746 0.0013735811900345962 26 0.0 0.0 3.614687342196306E-5 0.001879637417942079 0.0014097280634565593 27 0.0 0.0 3.614687342196306E-5 0.001988078038207968 0.0014097280634565593 28 0.0 0.0 7.229374684392612E-5 0.0030363373674448966 0.0014458749368785222 29 0.0 0.0 7.229374684392612E-5 0.004482212304323419 0.0014458749368785222 30 0.0 0.0 7.229374684392612E-5 0.008133046519941688 0.0014458749368785222 31 0.0 0.0 7.229374684392612E-5 0.019302430407328274 0.0015543155571444115 32 0.0 0.0 7.229374684392612E-5 0.031845395484749454 0.0016266093039883375 33 0.0 0.0 7.229374684392612E-5 0.04558120738509541 0.0016266093039883375 34 0.0 0.0 7.229374684392612E-5 0.06123280357680542 0.0016989030508322636 35 0.0 0.0 7.229374684392612E-5 0.07789651222433039 0.0016989030508322636 36 0.0 0.0 7.229374684392612E-5 0.10334391111339238 0.0016989030508322636 37 0.0 0.0 7.229374684392612E-5 0.14494896242207186 0.0017350499242542268 38 0.0 0.0 7.229374684392612E-5 0.20603717850518943 0.001843490544520116 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 1245 0.0 30.04074 1 GTATCAA 3405 0.0 29.204676 1 CGCGCGA 80 8.9963185E-5 19.249327 10 ATACCCG 160 5.2750693E-11 19.248285 5 CGTCCCG 230 0.0 19.131844 25 ATCGCGT 70 8.132797E-4 18.855122 8 GTAGGAC 2635 0.0 18.366816 3 TGTAGGA 2590 0.0 18.346518 2 TTAGGAC 1465 0.0 18.319517 3 GTCCTAC 2105 0.0 18.290138 1 AGGACGT 2535 0.0 18.223227 5 TAGGACG 2575 0.0 18.196436 4 GACGTGA 1370 0.0 17.66234 7 CGCTAAC 100 2.4856356E-5 17.599384 14 TAGGACC 1770 0.0 17.52386 4 CTGTAGG 2725 0.0 17.358133 1 TATCAAC 5725 0.0 17.330088 2 TCAACGC 5710 0.0 17.143831 4 GGACGTG 2690 0.0 17.091413 6 ATCAACG 5760 0.0 17.033512 3 >>END_MODULE