##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063909_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1701876 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.178594092636597 32.0 32.0 32.0 32.0 32.0 2 31.09128867203016 32.0 32.0 32.0 32.0 32.0 3 31.29764154380225 32.0 32.0 32.0 32.0 32.0 4 31.45138247439884 32.0 32.0 32.0 32.0 32.0 5 31.35313501101138 32.0 32.0 32.0 32.0 32.0 6 34.92844484557042 36.0 36.0 36.0 36.0 36.0 7 34.97235344995757 36.0 36.0 36.0 36.0 36.0 8 34.890717655105306 36.0 36.0 36.0 32.0 36.0 9 35.07334611922373 36.0 36.0 36.0 36.0 36.0 10 34.83637938369188 36.0 36.0 36.0 32.0 36.0 11 35.07505070874729 36.0 36.0 36.0 36.0 36.0 12 34.9553998058613 36.0 36.0 36.0 36.0 36.0 13 35.020683645577 36.0 36.0 36.0 36.0 36.0 14 34.947618392879384 36.0 36.0 36.0 32.0 36.0 15 34.90433909403505 36.0 36.0 36.0 32.0 36.0 16 34.92236390900395 36.0 36.0 36.0 32.0 36.0 17 34.89285294580804 36.0 36.0 36.0 32.0 36.0 18 34.878076311082594 36.0 36.0 36.0 32.0 36.0 19 34.88690656663588 36.0 36.0 36.0 32.0 36.0 20 34.88542114701659 36.0 36.0 36.0 32.0 36.0 21 34.874521410490544 36.0 36.0 36.0 32.0 36.0 22 34.85860309446752 36.0 36.0 36.0 32.0 36.0 23 34.80215068547885 36.0 36.0 36.0 32.0 36.0 24 34.790351353447605 36.0 36.0 36.0 32.0 36.0 25 34.75525890252874 36.0 36.0 36.0 32.0 36.0 26 34.68687260411452 36.0 36.0 36.0 32.0 36.0 27 34.68161663952015 36.0 36.0 36.0 32.0 36.0 28 34.65738631956735 36.0 36.0 36.0 32.0 36.0 29 34.62498442894782 36.0 36.0 36.0 32.0 36.0 30 34.60203211044753 36.0 36.0 36.0 32.0 36.0 31 34.60040390721768 36.0 36.0 36.0 32.0 36.0 32 34.553288253668306 36.0 36.0 36.0 32.0 36.0 33 34.518698777114196 36.0 36.0 36.0 32.0 36.0 34 34.5057107568354 36.0 36.0 36.0 32.0 36.0 35 34.46754463897487 36.0 36.0 36.0 32.0 36.0 36 34.44135530438175 36.0 36.0 36.0 32.0 36.0 37 34.435347228587744 36.0 36.0 36.0 32.0 36.0 38 34.39861658546216 36.0 36.0 36.0 32.0 36.0 39 34.38717509383763 36.0 36.0 36.0 32.0 36.0 40 34.377438779323526 36.0 36.0 36.0 32.0 36.0 41 34.35855726269129 36.0 36.0 36.0 32.0 36.0 42 34.29036839346698 36.0 36.0 36.0 32.0 36.0 43 34.282162155174646 36.0 36.0 36.0 32.0 36.0 44 34.223404642876446 36.0 36.0 36.0 32.0 36.0 45 34.17250845537513 36.0 36.0 36.0 32.0 36.0 46 34.153502370325455 36.0 36.0 36.0 32.0 36.0 47 34.12022321250197 36.0 36.0 36.0 32.0 36.0 48 34.07080715633806 36.0 36.0 36.0 32.0 36.0 49 34.04338917758991 36.0 36.0 36.0 32.0 36.0 50 33.37262291729832 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 1.0 19 5.0 20 15.0 21 50.0 22 145.0 23 479.0 24 1311.0 25 2867.0 26 5881.0 27 11334.0 28 19278.0 29 30892.0 30 46099.0 31 68906.0 32 104743.0 33 175596.0 34 360742.0 35 873531.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.1486918157095 18.34096470217682 12.271734710427161 26.238608771686522 2 15.510553997462786 20.471870010993808 37.92423262217318 26.093343369370224 3 17.831098053617332 24.799941241278002 29.180580242379726 28.188380462724936 4 11.906801670627003 16.761033118746607 36.49032009382587 34.84184511680052 5 13.903539388298562 37.482578049164566 33.82202933703748 14.791853225499391 6 33.886428858506726 36.361286016137484 16.923265854856638 12.829019270499142 7 29.92395441730704 30.810800329519104 20.83896927739656 18.42627597577729 8 27.777346880736314 34.068639548357226 19.00473359986274 19.14927997104372 9 27.45945901479442 13.879477606239767 18.039695438749884 40.62136794021593 10 15.107949600995147 27.755883419249184 32.65840472095514 24.477762258800524 11 36.977018302155976 20.798753845756096 22.910188521372884 19.314039330715048 12 24.503106575457405 23.66262132214253 29.692444916603694 22.141827185796366 13 30.058153643842573 19.987120057865727 25.06306294660406 24.891663351687644 14 23.122876971430887 19.64065473745691 26.028264153670694 31.208204137441513 15 24.901295164917432 27.95660571715328 22.42449278436659 24.7176063335627 16 25.189410187194966 25.88934943021232 24.56603414377899 24.35520623881372 17 23.572633963931565 26.34622028866968 25.708629770911628 24.372515976487126 18 24.13173501399342 25.575087653529554 26.703257767480615 23.589919564996407 19 25.372412561197173 25.17069398710599 25.557091115921487 23.899802335775345 20 25.644733486655234 24.96089586371665 25.477799074662755 23.91657157496536 21 26.284934977636443 24.398311040287307 24.89934636836056 24.41740761371569 22 25.414498714652957 25.02005141388175 25.199911861917002 24.365538009548292 23 24.484404480491133 24.79435819602824 25.600179097426533 25.121058226054092 24 24.718015733300113 25.238150079794675 25.541346332383004 24.502487854522208 25 24.749286508802516 24.97627571991071 25.691911651074744 24.582526120212027 26 24.406628275943117 25.573040310259724 25.88688447526149 24.13344693853567 27 24.741181849058687 25.3516036794545 25.339381139916345 24.56783333157047 28 24.30656428192002 25.324183107927063 25.612933478119842 24.756319132033074 29 24.552778169510646 25.06316692521036 25.413669910214825 24.970384995064165 30 24.287646666165244 25.392990109435527 25.785392614042348 24.533970610356885 31 24.94151591454654 24.95409124163726 25.21588134532495 24.888511498491255 32 24.553246148856054 25.399040563345853 25.241328168702903 24.806385119095186 33 24.267484933670545 25.0806789014977 25.687797918449085 24.96403824638267 34 24.736740976389687 25.28614600306374 25.738362161917593 24.23875085862898 35 24.962055663445636 25.216545669821105 25.59366801129369 24.22773065543957 36 24.29753153961013 25.588379954975732 25.400749464227683 24.71333904118645 37 24.881759009907622 25.346496488173553 25.10628321074896 24.665461291169873 38 24.604185238311544 25.41394323349648 25.40119160178711 24.58067992640487 39 24.98247461389797 25.046347521502017 25.231502564611823 24.73967529998819 40 25.256470447212536 25.200472661269803 25.49456386656192 24.04849302495574 41 24.58424166926191 25.231251065029998 25.82543497294089 24.3590722927672 42 25.16730313053258 25.689616776086744 25.29128578236285 23.851794311017827 43 24.555426546076752 25.273054829550794 25.583598142263504 24.587920482108945 44 24.310841445055935 25.522517154780246 25.207155943680377 24.959485456483442 45 24.37966000508858 25.60638458523641 25.240547193082346 24.77340821659266 46 24.420460341225052 25.16922581539814 25.309483461702083 25.100830381674726 47 24.84688658119462 25.25056659163037 25.35533536289775 24.547211464277257 48 24.901224789111108 25.45909025739139 24.90915736107422 24.730527592423275 49 24.587100762221276 25.636065781835022 25.037546977791465 24.73928647815224 50 24.58027978996949 25.778212860372957 24.94088778786355 24.700619561794003 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 17.0 1 22.0 2 27.0 3 76.5 4 126.0 5 136.0 6 146.0 7 162.0 8 178.0 9 239.0 10 300.0 11 505.5 12 711.0 13 1316.0 14 1921.0 15 2650.0 16 3379.0 17 3849.0 18 4319.0 19 4571.0 20 4823.0 21 5384.0 22 5945.0 23 7033.5 24 8122.0 25 9507.0 26 10892.0 27 13973.0 28 17054.0 29 20348.5 30 23643.0 31 27948.0 32 32253.0 33 38127.5 34 44002.0 35 51443.0 36 58884.0 37 64752.0 38 70620.0 39 74828.0 40 79036.0 41 84769.5 42 90503.0 43 93219.0 44 95935.0 45 103771.5 46 111608.0 47 118413.5 48 125219.0 49 128177.0 50 131135.0 51 129027.0 52 126919.0 53 124563.5 54 122208.0 55 119961.0 56 117714.0 57 112975.0 58 108236.0 59 98551.5 60 88867.0 61 78017.5 62 67168.0 63 58250.5 64 49333.0 65 41968.5 66 34604.0 67 29000.0 68 23396.0 69 19960.0 70 16524.0 71 13026.0 72 9528.0 73 7950.0 74 6372.0 75 5066.5 76 3761.0 77 3128.5 78 2496.0 79 2051.5 80 1607.0 81 1316.5 82 1026.0 83 822.5 84 619.0 85 475.5 86 332.0 87 235.0 88 138.0 89 102.0 90 66.0 91 61.0 92 56.0 93 46.0 94 36.0 95 38.5 96 41.0 97 27.5 98 14.0 99 15.5 100 17.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007521111996408669 2 5.288281872474845E-4 3 5.8758687471942724E-5 4 0.0 5 0.0 6 0.0 7 1.1751737494388545E-4 8 0.0 9 0.001057656374494969 10 9.988976870230265E-4 11 0.0 12 1.1751737494388545E-4 13 2.937934373597136E-4 14 1.7627606241582818E-4 15 0.0049944884351151315 16 8.226216246071982E-4 17 0.0 18 2.937934373597136E-4 19 0.0 20 5.875868747194272E-4 21 0.0 22 5.8758687471942724E-5 23 5.288281872474845E-4 24 4.700694997755418E-4 25 0.00193903668657411 26 0.004465660247867647 27 0.005993386122138158 28 0.0035255212483165637 29 0.002115312748989938 30 0.0030554517485410215 31 0.007697388058824498 32 0.0025853822487654802 33 0.003995590748092106 34 0.0020565540615179955 35 0.0024091061863496517 36 0.007462353308936727 37 0.00323172781095685 38 0.007814905433768383 39 0.003466762560844621 40 0.0013514498118546827 41 0.0027028996237093653 42 0.0014689671867985682 43 0.0011751737494388544 44 0.001057656374494969 45 0.0015864845617424535 46 4.700694997755418E-4 47 0.00193903668657411 48 0.0018802779991021672 49 4.700694997755418E-4 50 0.0016452432492143963 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1701876.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.465832561570096 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20694742582906 44.72243743091157 2 14.49193586733334 17.235500635597127 3 4.856637040187234 8.664118951322804 4 2.125389564204947 5.055522398124793 5 1.0682352182848813 3.1761748313450515 6 0.6038465445592809 2.1544942506986926 7 0.3852933087039721 1.6038251167738622 8 0.25567465733173556 1.216312509050064 9 0.17802597249008528 0.9527816404535486 >10 0.740200889848772 7.421837580620489 >50 0.044237377612668424 1.844239793987754 >100 0.04079076531664813 4.798757415587908 >500 0.0026858908582099343 1.0940141868753748 >1k 9.947743919296053E-5 0.05998325865100195 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 5.8758687471942724E-5 7 0.0 5.8758687471942724E-5 0.0 0.0 5.8758687471942724E-5 8 0.0 5.8758687471942724E-5 0.0 0.0 5.8758687471942724E-5 9 0.0 5.8758687471942724E-5 0.0 0.0 5.8758687471942724E-5 10 0.0 5.8758687471942724E-5 0.0 0.0 5.8758687471942724E-5 11 0.0 5.8758687471942724E-5 0.0 0.0 5.8758687471942724E-5 12 0.0 5.8758687471942724E-5 0.0 0.0 3.5255212483165636E-4 13 0.0 1.1751737494388545E-4 0.0 0.0 4.700694997755418E-4 14 0.0 1.1751737494388545E-4 0.0 0.0 4.700694997755418E-4 15 0.0 1.1751737494388545E-4 0.0 0.0 5.875868747194273E-4 16 0.0 1.7627606241582818E-4 0.0 0.0 8.226216246071982E-4 17 0.0 2.350347498877709E-4 0.0 0.0 8.226216246071982E-4 18 0.0 2.350347498877709E-4 0.0 5.8758687471942724E-5 8.813803120791409E-4 19 0.0 2.350347498877709E-4 0.0 5.8758687471942724E-5 8.813803120791409E-4 20 0.0 2.350347498877709E-4 0.0 5.8758687471942724E-5 9.988976870230263E-4 21 0.0 2.350347498877709E-4 0.0 5.8758687471942724E-5 0.001057656374494969 22 0.0 2.350347498877709E-4 0.0 2.9379343735971364E-4 0.0011164150619669118 23 0.0 2.350347498877709E-4 0.0 6.4634556219137E-4 0.0011164150619669118 24 0.0 2.350347498877709E-4 0.0 0.0013514498118546827 0.0011164150619669118 25 0.0 2.350347498877709E-4 0.0 0.001704001936686339 0.0011164150619669118 26 0.0 2.350347498877709E-4 0.0 0.001704001936686339 0.0011751737494388546 27 0.0 2.350347498877709E-4 0.0 0.0022328301239338236 0.0014102084993266254 28 0.0 2.9379343735971364E-4 0.0 0.0033492451859007356 0.0014102084993266254 29 0.0 3.5255212483165636E-4 0.0 0.005405799247418731 0.0014102084993266254 30 0.0 3.5255212483165636E-4 0.0 0.010047735557702206 0.0014102084993266254 31 0.0 3.5255212483165636E-4 0.0 0.024032303176024575 0.0014689671867985682 32 0.0 3.5255212483165636E-4 0.0 0.03643038623260449 0.0014689671867985682 33 0.0 3.5255212483165636E-4 0.0 0.04853467585182469 0.0014689671867985682 34 0.0 3.5255212483165636E-4 0.0 0.06498710834396866 0.0014689671867985682 35 0.0 3.5255212483165636E-4 0.0 0.08396616439740616 0.0014689671867985682 36 0.0 3.5255212483165636E-4 0.0 0.11005502163494872 0.0014689671867985682 37 0.0 3.5255212483165636E-4 0.0 0.14977589436598202 0.0014689671867985682 38 0.0 3.5255212483165636E-4 0.0 0.20594919958915925 0.001527725874270511 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACCGTCG 245 0.0 25.14215 8 ATACCGT 300 0.0 24.19932 6 TACCGTC 290 0.0 22.757982 7 TACACCG 115 8.780262E-9 21.042889 5 CGTCGTA 300 0.0 20.532757 10 GTATCAA 3390 0.0 20.507402 1 CGATTAA 70 8.123503E-4 18.857723 33 CCGTCGT 335 0.0 18.387545 9 ACGATTA 85 1.4312523E-4 18.117672 32 GTCCTAC 810 0.0 17.92595 1 AATACGA 250 0.0 17.600542 39 GTTATAT 175 1.9099389E-10 17.600023 1 TAGGACG 765 0.0 17.254417 4 TTAGGAC 640 0.0 17.186514 3 GTATTAA 310 0.0 17.03228 1 TCCTACA 960 0.0 16.728205 2 GTCGTAG 370 0.0 16.647694 11 CAATACG 265 0.0 16.604284 38 CGCGGTT 310 0.0 16.322123 10 CGCAATA 270 0.0 16.296797 36 >>END_MODULE