FastQCFastQC Report
Thu 2 Feb 2017
SRR4063906_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063906_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13507
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG400.2961427408010661No Hit
CTTTTATACTGGGCCAGGCCTACCTGGATGTTTTCAGGTAACTGTGGGGA270.19989635004071965No Hit
TTCCTAGACAGAGGCATAATTCAGCCATCCTTTTAACCAGAAAAAAAGTG230.170282075960613No Hit
GTCTTATAGTATCGAGCCAATCGGTGAATTCTGCTCTCTATCAGAATCAG210.1554749389205597No Hit
GTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGATAAAAACCAC210.1554749389205597No Hit
ATCATACACAGCGTGACAGGCACGAATAGCATGATCACATGCTTCGCCCC190.1406678018805064No Hit
GTGTACTACTGTGGACTAAAGTACATCAAAGATGACGTCATCCTGAACGA170.1258606648404531No Hit
GTGTATGATCGTGGTGGTGGCCACTATCAAGTCTGTGCGTTTCTACACTG160.11845709632042645No Hit
TTATAATACAACGTAAATAAATGTCAACTCCCAACAACTGGCACCATTAT160.11845709632042645No Hit
GTACATGGGAGAGCAGGTCCAGTTTCACACCAAGACAGGAAAGGCTTCCA150.1110535278003998No Hit
GTGTAAAACTATACACCTGCATCCAGTGACGCCCCCATAGCTCTCGGAGC150.1110535278003998No Hit
CCCTAATATCTGCCTTTTTTTTCTTTCTCCAAAAATCATATCCAGCATAT150.1110535278003998No Hit
GTCTAAACTCCATCCCCACAGTTCCTGACAGCAGCCAGGTATGTTCCTCC140.10364995928037314No Hit
ACAATATTCTGTGCCCTTGGAAATCAATCATGACAGAAGTCAGTAGAACT140.10364995928037314No Hit
CTGTAGAACAGATTAGATGGGTGAGTTACACTGAAAAACACATTCGTAGG140.10364995928037314No Hit
CTATTACTATGTCCTATCATAACATTCCATACATACTTAAAACCAAGTAA140.10364995928037314No Hit
TTGATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAG140.10364995928037314No Hit
GGGTATGCTGTGGCATTGAATTCCTCCCCACGTTTTTTCTTGACTTCTCA140.10364995928037314No Hit
ATATTAACATGTATAGCAATTGAGGATTCGTAGAGGTCCACTAAAGGAAA140.10364995928037314No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)