FastQCFastQC Report
Thu 2 Feb 2017
SRR4063902_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063902_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1808575
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAGATCG300.005748405629.3305665
GTATCAA21100.029.1947921
GGTATCA8500.023.8121551
ATTCCGC602.873224E-422.0003623
TATCAAC31100.019.5228162
TATACCG1252.2922904E-819.3581775
TCAACGC31300.018.975854
ATCAACG31350.018.9455813
CAACGCA31950.018.5209455
GTATTAG2300.018.174211
AACGCAG32650.018.1238656
GTCCTAC6450.017.3956341
GTAGGAC8550.016.9808563
TACCGTA1053.7790647E-516.7603267
GCGAATC1206.4141313E-616.498915
TAGGACG6550.016.4564654
GTATGCG1259.448859E-615.83938411
GTATAAT2950.015.6612731
TAACGTC850.002982578515.5279475
TTAGGAC5850.015.4173523
Produced by FastQC (version 0.11.5)