##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063902_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1808575 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.32264075307908 32.0 32.0 32.0 32.0 32.0 2 31.343610300927526 32.0 32.0 32.0 32.0 32.0 3 31.43939897433062 32.0 32.0 32.0 32.0 32.0 4 31.533877776702653 32.0 32.0 32.0 32.0 32.0 5 31.468314004119264 32.0 32.0 32.0 32.0 32.0 6 35.05157762326694 36.0 36.0 36.0 36.0 36.0 7 35.07910869054366 36.0 36.0 36.0 36.0 36.0 8 35.013320431831694 36.0 36.0 36.0 36.0 36.0 9 35.14726345327122 36.0 36.0 36.0 36.0 36.0 10 34.977912997802136 36.0 36.0 36.0 36.0 36.0 11 35.13662800823853 36.0 36.0 36.0 36.0 36.0 12 35.045318551898596 36.0 36.0 36.0 36.0 36.0 13 35.0932076358459 36.0 36.0 36.0 36.0 36.0 14 35.035678365564046 36.0 36.0 36.0 36.0 36.0 15 34.996535946808955 36.0 36.0 36.0 36.0 36.0 16 35.02817522082302 36.0 36.0 36.0 36.0 36.0 17 34.991324108759656 36.0 36.0 36.0 36.0 36.0 18 34.9917824806823 36.0 36.0 36.0 36.0 36.0 19 34.98509821268125 36.0 36.0 36.0 36.0 36.0 20 34.977023900031796 36.0 36.0 36.0 36.0 36.0 21 34.97861023181234 36.0 36.0 36.0 36.0 36.0 22 34.95894060240797 36.0 36.0 36.0 36.0 36.0 23 34.91025807610964 36.0 36.0 36.0 32.0 36.0 24 34.886430477033024 36.0 36.0 36.0 32.0 36.0 25 34.86155840924485 36.0 36.0 36.0 32.0 36.0 26 34.80996972754793 36.0 36.0 36.0 32.0 36.0 27 34.79493745075543 36.0 36.0 36.0 32.0 36.0 28 34.77816347124117 36.0 36.0 36.0 32.0 36.0 29 34.75418326583083 36.0 36.0 36.0 32.0 36.0 30 34.737670265264086 36.0 36.0 36.0 32.0 36.0 31 34.72999737362288 36.0 36.0 36.0 32.0 36.0 32 34.68873063046874 36.0 36.0 36.0 32.0 36.0 33 34.677898898303916 36.0 36.0 36.0 32.0 36.0 34 34.67403010657562 36.0 36.0 36.0 32.0 36.0 35 34.64404296200047 36.0 36.0 36.0 32.0 36.0 36 34.62246354173866 36.0 36.0 36.0 32.0 36.0 37 34.59880071326874 36.0 36.0 36.0 32.0 36.0 38 34.57391039907109 36.0 36.0 36.0 32.0 36.0 39 34.56097424768119 36.0 36.0 36.0 32.0 36.0 40 34.55724810969963 36.0 36.0 36.0 32.0 36.0 41 34.54004506310216 36.0 36.0 36.0 32.0 36.0 42 34.497791907993864 36.0 36.0 36.0 32.0 36.0 43 34.48251966327081 36.0 36.0 36.0 32.0 36.0 44 34.43548594888241 36.0 36.0 36.0 32.0 36.0 45 34.41075929944846 36.0 36.0 36.0 32.0 36.0 46 34.389880983647345 36.0 36.0 36.0 32.0 36.0 47 34.36615733381253 36.0 36.0 36.0 32.0 36.0 48 34.333870588723165 36.0 36.0 36.0 32.0 36.0 49 34.315841477406245 36.0 36.0 36.0 32.0 36.0 50 33.71964613024066 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 0.0 18 2.0 19 6.0 20 16.0 21 53.0 22 173.0 23 493.0 24 1241.0 25 2940.0 26 6090.0 27 11274.0 28 19187.0 29 30242.0 30 44262.0 31 64794.0 32 95747.0 33 155828.0 34 327619.0 35 1048607.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.098013388586416 18.73301681149034 12.982704105162227 26.186265694761023 2 15.371830088777418 20.494944066244674 37.776185357697365 26.357040487280543 3 17.95649714608937 24.430061081373083 29.0951253779918 28.51831639454575 4 12.514161701892373 16.998907980039533 36.1557579862599 34.33117233180819 5 14.276709564159628 37.00172787968428 33.732634809172964 14.988927746983121 6 33.602348370787354 36.03349159807207 17.062512820881434 13.301647210259137 7 29.9378792695907 30.585903266383756 21.009081735620587 18.46713572840496 8 27.656469872689826 33.86577830612499 19.253832437139735 19.223919384045452 9 27.03963232403435 14.856771920473264 18.63698467666621 39.466611078826176 10 15.6244747202194 27.39975450081833 32.13606405095767 24.8397067280046 11 36.08476286579213 21.530376124849674 23.10891171225965 19.275949297098542 12 24.570655743868645 23.610063630311647 29.381467809962775 22.43781281585693 13 29.574353618085482 20.17735588452073 25.14327641718554 25.105014080208253 14 23.344478424655073 19.731732657144956 25.62711182155616 31.296677096643812 15 24.87499357204589 27.81482183922982 22.22938589676457 25.08079869195972 16 25.250572139949938 26.122536093612545 24.249831772331703 24.377059994105814 17 23.69202272507361 26.293628962028116 25.530873754198748 24.483474558699527 18 24.239579203691754 25.761775456976803 26.309721874341673 23.688923464989763 19 25.434831289827624 25.247003856627455 25.395795032000336 23.922369821544585 20 25.820401356654944 24.938763639258948 25.259238534839206 23.981596469246906 21 25.96701823258643 24.76939026581701 24.796151666367166 24.467439835229392 22 25.57140416383985 24.95041665491706 25.164674209638438 24.313504971604655 23 24.679427101908207 25.136144300517703 25.293451858634413 24.890976738939674 24 24.744093258261092 25.170452440575946 25.501929978894918 24.583524322268048 25 24.920170722685118 24.837618264828063 25.565716566945728 24.67649444554109 26 24.379509977937396 25.48529436159448 25.73041598239415 24.40477967807397 27 24.759504394087102 25.51440374729119 25.161892512550782 24.56419934607092 28 24.635209745065676 25.105045327494256 25.391912104196564 24.867832823243507 29 24.655950430542322 25.180850999124704 25.225859854368153 24.93733871596482 30 24.598274936370377 25.156578913173423 25.52140902498351 24.723737125472695 31 25.147655293112553 24.847285083511434 25.100598030894115 24.904461592481898 32 24.698578334797705 25.339049263123904 25.034655542979234 24.92771685909916 33 24.515037406897466 25.31703244142904 25.309899418852194 24.858030732821305 34 24.879141173835993 25.107505328957735 25.650768724616608 24.362584772589667 35 24.935983531276143 25.17380243171346 25.518559661247686 24.37165437576271 36 24.54168986810157 25.259879111077687 25.5378539589712 24.660577061849544 37 25.18632752173199 24.987489694549488 25.007008535760672 24.819174247957847 38 24.74629787328165 25.320832549960738 25.163181119430224 24.76968845732739 39 25.154189065598224 25.159220876596773 24.885567770752903 24.8010222870521 40 25.2900841402976 25.134598488161913 25.25757149326496 24.317745878275524 41 24.82891899364114 25.039590821122477 25.572131600774124 24.559358584462263 42 25.09332149316601 25.35955937768346 25.230117448783073 24.317001680367458 43 24.769940134394883 25.00139614531191 25.396187334501484 24.83247638579172 44 24.452920201022142 25.309072370956514 25.276947312138905 24.961060115882443 45 24.58931278800633 25.408862549860274 25.168836540130958 24.83298812200244 46 24.796881479638383 25.01119681512814 25.12432611760803 25.067595587625448 47 25.000649696412076 25.024425820428338 25.34910814652949 24.625816336630105 48 24.819993121531045 25.469577151097404 24.93649580711977 24.773933920251785 49 24.858424058786778 25.183542799006954 25.08611776154642 24.87191538065986 50 24.595823737735376 25.63952990094302 25.030037792602382 24.734608568719228 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 7.0 1 18.0 2 29.0 3 69.5 4 110.0 5 119.0 6 128.0 7 133.0 8 138.0 9 191.5 10 245.0 11 400.0 12 555.0 13 1000.0 14 1445.0 15 1980.0 16 2515.0 17 2547.5 18 2580.0 19 2705.0 20 2830.0 21 3454.0 22 4078.0 23 5350.5 24 6623.0 25 8850.5 26 11078.0 27 14389.0 28 17700.0 29 21605.5 30 25511.0 31 30020.5 32 34530.0 33 40731.0 34 46932.0 35 54444.5 36 61957.0 37 67933.0 38 73909.0 39 79670.5 40 85432.0 41 91764.0 42 98096.0 43 101469.0 44 104842.0 45 112511.5 46 120181.0 47 124452.0 48 128723.0 49 132684.5 50 136646.0 51 137398.5 52 138151.0 53 137896.5 54 137642.0 55 133186.5 56 128731.0 57 122318.0 58 115905.0 59 105895.5 60 95886.0 61 84296.0 62 72706.0 63 62748.5 64 52791.0 65 44197.0 66 35603.0 67 29858.0 68 24113.0 69 20143.0 70 16173.0 71 12487.0 72 8801.0 73 7321.5 74 5842.0 75 4733.0 76 3624.0 77 3023.0 78 2422.0 79 1961.0 80 1500.0 81 1172.5 82 845.0 83 663.0 84 481.0 85 364.0 86 247.0 87 175.5 88 104.0 89 80.0 90 56.0 91 45.0 92 34.0 93 35.0 94 36.0 95 30.5 96 25.0 97 25.0 98 25.0 99 18.5 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009344373332596105 2 3.8704504927912866E-4 3 2.2116859958807347E-4 4 0.0 5 0.0 6 1.1058429979403673E-4 7 0.0 8 0.0 9 0.0014375958973224777 10 8.293822484552755E-4 11 0.0 12 1.6587644969105511E-4 13 4.4233719917614693E-4 14 3.3175289938211023E-4 15 0.003759866192997249 16 7.740900985582573E-4 17 0.0 18 2.2116859958807347E-4 19 0.0 20 4.976293490731653E-4 21 0.0 22 2.2116859958807347E-4 23 8.846743983522939E-4 24 3.3175289938211023E-4 25 0.0015481801971165146 26 0.004699832741246562 27 0.006745642287436241 28 0.0038704504927912857 29 0.0023222702956747715 30 0.003428113293615139 31 0.0077409009855825715 32 0.003428113293615139 33 0.004699832741246562 34 0.003317528993821102 35 0.0030963603942330293 36 0.007630316685788535 37 0.0036492818932032127 38 0.008570283234037848 39 0.004478664141658488 40 0.002654023195056882 41 0.004146911242276377 42 0.0023222702956747715 43 0.001327011597528441 44 9.952586981463306E-4 45 0.0011611351478373858 46 0.0013823037474254593 47 0.002101101696086698 48 0.0018246409466016063 49 2.7646074948509185E-4 50 0.0011058429979403674 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1808575.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.676174111878694 #Duplication Level Percentage of deduplicated Percentage of total 1 67.27462896141608 33.41946181599342 2 16.293405856527173 16.187881324086955 3 6.70794133619193 9.996745852468157 4 3.303232307725553 6.563677730022296 5 1.8806504764138439 4.671176025496085 6 1.154205256431349 3.4401900767597566 7 0.735214486939385 2.5565850003943513 8 0.5335916111148188 2.120543182270208 9 0.38887856307755025 1.7386199287035826 >10 1.6246461453898347 13.532255761498678 >50 0.06822375887953441 2.3000482744499355 >100 0.0339213716066781 3.0406476128126863 >500 0.001459868286294481 0.4321674150437631 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 5.5292149897018373E-5 0.0 5 0.0 0.0 0.0 5.5292149897018373E-5 0.0 6 0.0 0.0 0.0 1.1058429979403675E-4 0.0 7 0.0 0.0 0.0 1.1058429979403675E-4 0.0 8 0.0 0.0 0.0 1.1058429979403675E-4 0.0 9 0.0 0.0 0.0 1.1058429979403675E-4 0.0 10 0.0 0.0 0.0 1.6587644969105511E-4 0.0 11 0.0 0.0 0.0 1.6587644969105511E-4 0.0 12 0.0 0.0 0.0 1.6587644969105511E-4 0.0 13 0.0 0.0 0.0 1.6587644969105511E-4 0.0 14 0.0 0.0 0.0 1.6587644969105511E-4 0.0 15 0.0 0.0 0.0 1.6587644969105511E-4 0.0 16 0.0 0.0 0.0 1.6587644969105511E-4 0.0 17 0.0 0.0 0.0 1.6587644969105511E-4 0.0 18 0.0 0.0 0.0 1.6587644969105511E-4 0.0 19 0.0 0.0 0.0 1.6587644969105511E-4 0.0 20 0.0 0.0 0.0 2.211685995880735E-4 0.0 21 0.0 0.0 0.0 2.211685995880735E-4 0.0 22 0.0 0.0 0.0 2.211685995880735E-4 0.0 23 0.0 0.0 0.0 3.3175289938211023E-4 0.0 24 0.0 0.0 0.0 4.42337199176147E-4 0.0 25 0.0 0.0 0.0 4.976293490731653E-4 0.0 26 0.0 0.0 0.0 8.84674398352294E-4 0.0 27 0.0 0.0 0.0 0.001050550848043349 0.0 28 0.0 0.0 0.0 0.0014375958973224777 0.0 29 0.0 0.0 0.0 0.002985776094438992 0.0 30 0.0 0.0 0.0 0.004865709190937617 0.0 31 0.0 0.0 0.0 0.012938363075902298 0.0 32 0.0 0.0 0.0 0.02200627565901331 0.0 33 0.0 0.0 0.0 0.03179298619078556 0.0 34 0.0 0.0 0.0 0.042962000469983275 0.0 35 0.0 0.0 0.0 0.05534744204691539 0.0 36 0.0 0.0 0.0 0.07381502011251953 0.0 37 0.0 0.0 0.0 0.10289869095835119 0.0 38 0.0 0.0 0.0 0.14381488188214478 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGATCG 30 0.0057484056 29.330566 5 GTATCAA 2110 0.0 29.194792 1 GGTATCA 850 0.0 23.812155 1 ATTCCGC 60 2.873224E-4 22.00036 23 TATCAAC 3110 0.0 19.522816 2 TATACCG 125 2.2922904E-8 19.358177 5 TCAACGC 3130 0.0 18.97585 4 ATCAACG 3135 0.0 18.945581 3 CAACGCA 3195 0.0 18.520945 5 GTATTAG 230 0.0 18.17421 1 AACGCAG 3265 0.0 18.123865 6 GTCCTAC 645 0.0 17.395634 1 GTAGGAC 855 0.0 16.980856 3 TACCGTA 105 3.7790647E-5 16.760326 7 GCGAATC 120 6.4141313E-6 16.4989 15 TAGGACG 655 0.0 16.456465 4 GTATGCG 125 9.448859E-6 15.839384 11 GTATAAT 295 0.0 15.661273 1 TAACGTC 85 0.0029825785 15.527947 5 TTAGGAC 585 0.0 15.417352 3 >>END_MODULE