##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063900_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2263628 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.385673794457393 32.0 32.0 32.0 32.0 32.0 2 31.42980958001933 32.0 32.0 32.0 32.0 32.0 3 31.488065176787 32.0 32.0 32.0 32.0 32.0 4 31.56378565736066 32.0 32.0 32.0 32.0 32.0 5 31.52099549926048 32.0 32.0 32.0 32.0 32.0 6 35.105063641198996 36.0 36.0 36.0 36.0 36.0 7 35.125058976121515 36.0 36.0 36.0 36.0 36.0 8 35.07379613611424 36.0 36.0 36.0 36.0 36.0 9 35.17658731911781 36.0 36.0 36.0 36.0 36.0 10 35.04416273345267 36.0 36.0 36.0 36.0 36.0 11 35.176172940076725 36.0 36.0 36.0 36.0 36.0 12 35.1043740402575 36.0 36.0 36.0 36.0 36.0 13 35.128218064098874 36.0 36.0 36.0 36.0 36.0 14 35.078872500251805 36.0 36.0 36.0 36.0 36.0 15 35.05483409818221 36.0 36.0 36.0 36.0 36.0 16 35.07545100166635 36.0 36.0 36.0 36.0 36.0 17 35.04895989977152 36.0 36.0 36.0 36.0 36.0 18 35.03930990427756 36.0 36.0 36.0 36.0 36.0 19 35.03793953776857 36.0 36.0 36.0 36.0 36.0 20 35.03114866930432 36.0 36.0 36.0 36.0 36.0 21 35.031774655552944 36.0 36.0 36.0 36.0 36.0 22 35.010128872765314 36.0 36.0 36.0 36.0 36.0 23 34.969011692733964 36.0 36.0 36.0 36.0 36.0 24 34.948594026933755 36.0 36.0 36.0 36.0 36.0 25 34.92577358117146 36.0 36.0 36.0 36.0 36.0 26 34.87508945816185 36.0 36.0 36.0 32.0 36.0 27 34.858459517199826 36.0 36.0 36.0 32.0 36.0 28 34.84908120945668 36.0 36.0 36.0 32.0 36.0 29 34.831288975043606 36.0 36.0 36.0 32.0 36.0 30 34.813104450024476 36.0 36.0 36.0 32.0 36.0 31 34.80708270086781 36.0 36.0 36.0 32.0 36.0 32 34.769117982283305 36.0 36.0 36.0 32.0 36.0 33 34.76375800264001 36.0 36.0 36.0 32.0 36.0 34 34.75514439651745 36.0 36.0 36.0 32.0 36.0 35 34.73507705329674 36.0 36.0 36.0 32.0 36.0 36 34.711519295573304 36.0 36.0 36.0 32.0 36.0 37 34.69276974838622 36.0 36.0 36.0 32.0 36.0 38 34.675979887154604 36.0 36.0 36.0 32.0 36.0 39 34.66044553256984 36.0 36.0 36.0 32.0 36.0 40 34.6636982755117 36.0 36.0 36.0 32.0 36.0 41 34.64124052185253 36.0 36.0 36.0 32.0 36.0 42 34.610026029011834 36.0 36.0 36.0 32.0 36.0 43 34.592255883033786 36.0 36.0 36.0 32.0 36.0 44 34.552652202570385 36.0 36.0 36.0 32.0 36.0 45 34.52956360320689 36.0 36.0 36.0 32.0 36.0 46 34.51529977540479 36.0 36.0 36.0 32.0 36.0 47 34.48613597287187 36.0 36.0 36.0 32.0 36.0 48 34.45923005016726 36.0 36.0 36.0 32.0 36.0 49 34.440668696446586 36.0 36.0 36.0 32.0 36.0 50 33.8762570528373 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 6.0 19 4.0 20 19.0 21 62.0 22 170.0 23 579.0 24 1424.0 25 3574.0 26 7194.0 27 13816.0 28 23268.0 29 36121.0 30 53357.0 31 75899.0 32 109674.0 33 175628.0 34 373025.0 35 1389805.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.29036840024122 18.34777671989697 13.119881949338064 26.241972930523737 2 15.393032825811808 20.482325837211718 37.73380190535935 26.390839431617124 3 17.973045864969563 24.172532263543886 28.969797532539648 28.884624338946903 4 12.791280192681837 17.00676966356663 35.61247696176227 34.58947318198927 5 14.469780370272852 36.905313063807306 33.50775834191837 15.11714822400147 6 33.64868297531614 35.62498205312276 17.18858026395715 13.537754707603955 7 30.203310970981956 30.70308434343836 20.72595031157974 18.367654373999944 8 27.974737898629986 33.59500766026927 19.23323973727132 19.197014703829428 9 27.36634704376426 15.21533129675893 18.559554339206706 38.8587673202701 10 15.928885307590393 27.80672120784004 31.91718895163524 24.347204532934324 11 35.81401184293532 21.93359509601401 22.872486115209743 19.379906945840926 12 24.766414593223438 23.952455043368474 28.955092404840727 22.326037958567362 13 29.486379769024634 20.589163012487088 25.167320634488682 24.757136583999596 14 23.467501669888637 19.72929249734055 25.671003664919617 31.132202167851197 15 24.6924706784642 27.806729683449348 22.551251941662645 24.949547696423807 16 25.036899007824225 26.549879815922434 24.095129419321605 24.318091756931732 17 23.94558646562068 26.524764669813237 25.416411177101537 24.113237687464547 18 24.2215445457425 26.145765825225737 26.18093078466896 23.451758844362804 19 25.25485636332472 25.529150549471908 25.654480329806837 23.56151275739653 20 25.744542115544846 25.28761630778501 25.370713807968347 23.597127768701796 21 25.804151565539925 24.8779834849189 25.06432152279438 24.2535434267468 22 25.50913842733877 25.175161289752555 25.185896269174968 24.129804013733704 23 24.878667261586582 25.323222639942394 25.410163411541742 24.387946686929286 24 24.67366373095083 25.347585456190448 25.54161129802935 24.43713951482937 25 24.747922325087426 25.280704792568258 25.591847986471034 24.379524895873278 26 24.537772134584852 25.689487138026436 25.524653478206698 24.248087249182017 27 24.72263849519676 25.649798186149418 25.220722854093182 24.406840464560638 28 24.811511223619746 25.396968451931272 25.415876970925943 24.37564335352304 29 24.7248819786762 25.477276201264022 25.327689750810002 24.470152069249778 30 24.6724805944697 25.594756862069424 25.298582302863228 24.43418024059765 31 24.932713276381875 25.151892157451815 25.218781257621114 24.696613308545192 32 24.72186548375283 25.57331074946887 25.27939359319798 24.425430173580324 33 24.638605714538166 25.438773594283255 25.517191106791397 24.405429584387186 34 24.78542687549369 25.22871012262079 25.65184814743475 24.33401485445077 35 24.687142019653052 25.431100559426785 25.62795799726715 24.25379942365302 36 24.722338195369467 25.430547547885862 25.512457725026565 24.334656531718103 37 24.9573677383784 25.19924507763048 25.204723212802577 24.638663971188542 38 24.79136890889772 25.425093165506564 25.280358038300026 24.503179887295694 39 25.07917924838803 25.26044439339352 25.22090447022025 24.4394718879982 40 24.997426630246306 25.144848688067384 25.38561890536582 24.47210577632049 41 24.74345630230717 25.33628562542411 25.506902425921734 24.41335564634698 42 24.926786361963632 25.322575158565126 25.441457584243725 24.309180895227517 43 24.710205527775166 25.09653925384799 25.579887143723656 24.613368074653195 44 24.487716867704073 25.243992733672854 25.56140859306801 24.706881805555064 45 24.725326184819362 25.135293696661147 25.411182394015885 24.728197724503598 46 24.712748028034927 25.04363614676589 25.42554906885256 24.818066756346624 47 24.7053116791204 25.142583997547245 25.53567847010353 24.616425853228826 48 24.548016059544718 25.49002109935783 25.279822722983457 24.682140118113992 49 24.604924156747433 25.14132255647601 25.415132248579265 24.838621038197292 50 24.43802789461524 25.51984877126654 25.386962574069255 24.655160760048965 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 4.0 1 14.5 2 25.0 3 85.5 4 146.0 5 181.0 6 216.0 7 213.5 8 211.0 9 287.5 10 364.0 11 532.0 12 700.0 13 1315.5 14 1931.0 15 2569.5 16 3208.0 17 3147.0 18 3086.0 19 3115.0 20 3144.0 21 3835.5 22 4527.0 23 5867.5 24 7208.0 25 9384.0 26 11560.0 27 15162.5 28 18765.0 29 23495.5 30 28226.0 31 34473.0 32 40720.0 33 47977.0 34 55234.0 35 64710.5 36 74187.0 37 82867.5 38 91548.0 39 100319.0 40 109090.0 41 117701.0 42 126312.0 43 134876.0 44 143440.0 45 151686.5 46 159933.0 47 165925.5 48 171918.0 49 177357.5 50 182797.0 51 183249.5 52 183702.0 53 180126.0 54 176550.0 55 168654.5 56 160759.0 57 150652.0 58 140545.0 59 127950.5 60 115356.0 61 99708.0 62 84060.0 63 72391.5 64 60723.0 65 49604.5 66 38486.0 67 31694.0 68 24902.0 69 20149.5 70 15397.0 71 12156.0 72 8915.0 73 7562.0 74 6209.0 75 5012.0 76 3815.0 77 3104.5 78 2394.0 79 1938.0 80 1482.0 81 1169.5 82 857.0 83 661.5 84 466.0 85 350.0 86 234.0 87 177.5 88 121.0 89 92.0 90 63.0 91 40.5 92 18.0 93 19.0 94 20.0 95 21.0 96 22.0 97 20.5 98 19.0 99 16.0 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008526135919859623 2 5.742993106641198E-4 3 2.208843502554307E-4 4 0.0 5 0.0 6 1.325306101532584E-4 7 8.835374010217226E-5 8 0.0 9 0.001016068011174981 10 7.510067908684643E-4 11 0.0 12 8.835374010217226E-5 13 4.417687005108614E-4 14 1.767074802043445E-4 15 0.004594394485312958 16 7.510067908684643E-4 17 0.0 18 4.8594557056194746E-4 19 0.0 20 9.718911411238949E-4 21 0.0 22 0.0 23 7.951836609195504E-4 24 5.301224406130336E-4 25 0.0017670748020434455 26 0.005919700586845542 27 0.006891591727969436 28 0.004329333265006441 29 0.002385550982758651 30 0.004329333265006441 31 0.007951836609195505 32 0.002871496553320599 33 0.0045502176152618715 34 0.002827319683269512 35 0.002694789073116254 36 0.007642598518837901 37 0.003710857084291235 38 0.008084367219348762 39 0.00410844891475101 40 0.002606435333014082 41 0.0033574421238825457 42 0.0020763128924010483 43 0.0018112516720945313 44 0.0015903673218391008 45 0.0015020135817369286 46 0.001016068011174981 47 0.0022088435025543066 48 0.002297197242656479 49 5.301224406130336E-4 50 0.001634544191890187 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2263628.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.34424264444807 #Duplication Level Percentage of deduplicated Percentage of total 1 60.39597601114078 25.5742186296401 2 16.3133359698437 13.815517132949285 3 7.91809230581232 10.058568656353625 4 4.63048662899697 7.842977975204804 5 2.903779135063921 6.147916414051611 6 1.914556959507974 4.864227867001343 7 1.305578731905515 3.869861983066656 8 0.971438139222227 3.290784982503768 9 0.7164099962977926 2.7302254844527685 >10 2.8541171192212333 19.02485849387792 >50 0.0612846809627153 1.7148127851512582 >100 0.014839235368357517 1.0258922654983986 >500 1.0508665654432199E-4 0.040137330248327045 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 0.0 0.0 20 0.0 0.0 0.0 0.0 0.0 21 0.0 0.0 0.0 0.0 0.0 22 0.0 0.0 0.0 0.0 0.0 23 0.0 0.0 0.0 4.4176870051086134E-5 0.0 24 0.0 0.0 0.0 1.7670748020434454E-4 0.0 25 0.0 0.0 0.0 1.7670748020434454E-4 0.0 26 0.0 0.0 0.0 3.0923809035760295E-4 0.0 27 0.0 0.0 0.0 3.534149604086891E-4 0.0 28 0.0 0.0 0.0 7.951836609195504E-4 0.0 29 0.0 0.0 0.0 0.0021204897624521346 0.0 30 0.0 0.0 0.0 0.004771101965517302 0.0 31 0.0 0.0 0.0 0.01382736032598996 0.0 32 0.0 0.0 0.0 0.02385550982758651 0.0 33 0.0 0.0 0.0 0.035606557261175426 0.0 34 0.0 0.0 0.0 0.04846202644604149 0.0 35 0.0 0.0 0.0 0.06449823027458575 0.0 36 0.0 0.0 0.0 0.09051840673467548 0.0 37 0.0 0.0 0.0 0.13138201153193016 0.0 38 0.0 0.0 0.0 0.1940248132643703 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2685 0.0 29.827124 1 GGTATCA 930 0.0 27.206282 1 TATCAAC 3945 0.0 19.906677 2 TAGGACG 510 0.0 19.841513 4 TCAACGC 4050 0.0 19.336689 4 ATCAACG 4115 0.0 19.030828 3 CAACGCA 4205 0.0 18.676237 5 AACGCAG 4350 0.0 18.104265 6 GTATAGG 325 0.0 16.924309 1 GTAGGAC 780 0.0 16.639296 3 TTAGGAC 555 0.0 16.250563 3 TATACCG 95 3.3500153E-4 16.2092 5 GTCCTAC 765 0.0 15.24294 1 ACGCAGA 5310 0.0 14.831179 7 AGAGTAC 5430 0.0 14.422711 11 CGCAGAG 5510 0.0 14.412614 8 GTATAGA 400 0.0 14.301042 1 TAGGACC 680 0.0 14.23413 4 CAGAGTA 5620 0.0 14.131141 10 CTAGTAT 190 1.7571074E-7 13.893292 3 >>END_MODULE