SRR4063898_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR4063898_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1145
Sequences flagged as poor quality	0
Sequence length	50
%GC	52

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGT	14	1.222707423580786	No Hit
ACACATCTCCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGTCTTCT	9	0.7860262008733625	RNA PCR Primer, Index 47 (95% over 24bp)
GAGCAGAGCAGAAGGGGTAGCAGAGGGCACTGGCTGGAGGAGGCTGTGCA	7	0.611353711790393	No Hit
GTACATGGGGATTCCTCCCCTTTGTGACCACGTCCCAATCTAACTGAAGA	6	0.5240174672489083	No Hit
GCCCAGGAGAGTGTAGTGCCACAGAGCCGGGGGAACTGAAAGGGAGCATG	6	0.5240174672489083	No Hit
ATACACATCTCCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGTCTT	6	0.5240174672489083	RNA PCR Primer, Index 47 (95% over 22bp)
CATTTGGATGCAGAAAGACGACGACATCATTAGATTCCAGCTGCATCTGT	5	0.43668122270742354	No Hit
GAGCCGGGGGAACTGAAAGGGAGCATGTTCGAATGAGCCCAGAGCCACAG	5	0.43668122270742354	No Hit
TATCAACGCAGAGTACATGGGGATTCCTCCCCTTTGTGACCACGTCCCAA	4	0.34934497816593885	No Hit
GTGCATCACAGAGGACGTTTTCTTCAGTTAGATTGGGACGTGGTCACAAA	3	0.26200873362445415	No Hit
GTCCCTGGCTCGGGGCAGGTTCCCTGCTCTGCTCTGCTGTCCCTCGAGCC	3	0.26200873362445415	No Hit
AGCAAGACACGACCTCGTGGACACCAGGGCTCGAGGGACAGCAGAGCAGA	3	0.26200873362445415	No Hit
GCTCTGCTCTGCTGTCCCTCGAGCCCTGGTGTCCACGAGGTCGTGTCTTG	3	0.26200873362445415	No Hit
GGACGGAGAGTCTCCAGCAAAGAGACTGCAGTGGCAGCTGTGGATGGGGG	3	0.26200873362445415	No Hit
CTGCTACCCCTTCTGCTCTGCTCACAGCAACCGCCGAGAGATGGGTCTGC	3	0.26200873362445415	No Hit
CACCAGGGGAATGTGCAGGGAGAGAAGACAAGCAAGACACGACCTCGTGG	3	0.26200873362445415	No Hit
CTGAAAGGGAGCATGTTCGAATGAGCCCAGAGCCACAGAAGCCACATGGG	3	0.26200873362445415	No Hit
CCCCACAGGCCTCTCGTTCCTCATTCTGTGGTCGTCCAGCTTCTGGTGCC	3	0.26200873362445415	No Hit
GGTCTGCACTTGCTGTCACCCCCTCCCCACAGGCCTCTCGTTCCTCATTC	3	0.26200873362445415	No Hit
TTCCCCTGGTGTGATTTCACCCCCATCCACAGCTGCCACTGCAGTCTCTT	3	0.26200873362445415	No Hit
GCCCAGAGCCACAGAAGCCACATGGGAGCCGGGCAGAAGCACGCCTGTGG	3	0.26200873362445415	No Hit
CTGAAACCCTCTTTTTCTAGAATCTGTAAGTGGACATTTGGAGGGCTTTG	3	0.26200873362445415	No Hit
GCTCACAGCAACCGCCGAGAGATGGGTCTGCACTTGCTGTCACCCCCTCC	3	0.26200873362445415	No Hit
CTCCAGGACATCTCCACTGACTGGCATTTCCTCACAGATGCAGCTGGAAT	3	0.26200873362445415	No Hit
GGAGAGTGTAGTGCCACAGAGCCGGGGGAACTGAAAGGGAGCATGTTCGA	3	0.26200873362445415	No Hit
CTCCCTTTCAGTTCCCCCGGCTCTGTGGCACTACACTCTCCTGGGCCACC	3	0.26200873362445415	No Hit
TCCTCATTCTGTGGTCGTCCAGCTTCTGGTGCCATCGTACCCCCTGGTCA	3	0.26200873362445415	No Hit
GTTCGAATGAGCCCAGAGCCACAGAAGCCACATGGGAGCCGGGCAGAAGC	3	0.26200873362445415	No Hit
GAGCAGGGAACCTGCCCCGAGCCAGGGACAGAGGGGACAAAGAGGAGGTG	3	0.26200873362445415	No Hit
GTGCAGGGAGAGAAGACAAGCAAGACACGACCTCGTGGACACCAGGGCTC	3	0.26200873362445415	No Hit
AAGCACGCCTGTGGAGCTAGGGGCGAGAGACCTCCAGTGACCAGGGGGTA	3	0.26200873362445415	No Hit
GTACATGGGGAGCACATTTGGATGCAGAAAGACGACGACATCATTAGATT	3	0.26200873362445415	No Hit
CCCATCTCTCGGCGGTTGCTGTGAGCAGAGCAGAAGGGGTAGCAGAGGGC	3	0.26200873362445415	No Hit
CCCTGGCTCGGGGCAGGTTCCCTGCTCTGCTCTGCTGTCCCTCGAGCCCT	3	0.26200873362445415	No Hit
CTGTGATGCACAGCCTCCTCCAGCCAGTGCCCTCTGCTACCCCTTCTGCT	3	0.26200873362445415	No Hit
TCTTTGTCCCCTCTGTCCCTGGCTCGGGGCAGGTTCCCTGCTCTGCTCTG	3	0.26200873362445415	No Hit
GGAATGTGCAGGGAGAGAAGACAAGCAAGACACGACCTCGTGGACACCAG	3	0.26200873362445415	No Hit
TCCCTGCTCTGCTCTGCTGTCCCTCGAGCCCTGGTGTCCACGAGGTCGTG	3	0.26200873362445415	No Hit
CCCAGAAGCTGGACGACCACAGAATGAGGAACGAGAGGCCTGTGGGGAGG	2	0.17467248908296942	No Hit
GCTCTGCTCTGCTGTCCCTCGAGCCCTGGTGTCCACCTGTCTCTTATACA	2	0.17467248908296942	No Hit
CCACAGGCGTGCTTCTGCCCGGCTCCCATGTGGCTTCTGTGGCTCTGGGC	2	0.17467248908296942	No Hit
ACGCAGAGTACATGGGGAGCACATTTGGATGCAGAAAGACGACGACATCA	2	0.17467248908296942	No Hit
GGCGTGCTTCTGCCCGGCTCCCATGTGGCTTCTGTGGCTCTGGGCTCATT	2	0.17467248908296942	No Hit
CATGGGAGCCGGGCAGAAGCACGCCTGTGGAGCTAGGGGCGAGAGACCTC	2	0.17467248908296942	No Hit
TATCTCTGCAGTGATCACACAGGTGATGTAACTCTTGTCTATATCTGCCT	2	0.17467248908296942	No Hit
GTATCACTCAGCGCCCCAGGCCGCGGTCGGCATCACCATCCGGACCGGCG	2	0.17467248908296942	No Hit
GGGCAAAGCGGCGCACATCGCGACTGGTCTACTTACAGCTCGTAAGGACT	2	0.17467248908296942	No Hit
TCAACGCAGAGTACATGGGGATTCCTCCCCTTTGTGACCACGTCCCAATC	2	0.17467248908296942	No Hit
GCCGACCGGGAGGTTCAGGCCTCGTACACGAAGCCGCCGTCGATCATGGT	2	0.17467248908296942	No Hit
CACTTGCTGTCACCCCCTCCCCACAGGCCTCTCGTTCCTCATTCTGTGGT	2	0.17467248908296942	No Hit
CTTTGCTGGAGACTCTCCGTCCTCTGCCCCAGTCCTGACCTCTCTCCCGA	2	0.17467248908296942	No Hit
GGTATTTAGGCCACAAACCATCCGGTTTTGTCCCTTTACGTAACAGGTTT	2	0.17467248908296942	No Hit
ATAATACTAAAGTAAAAAATTTCAAGTAACAACCCCATTTCTAATTAAAG	2	0.17467248908296942	No Hit
TTCCTCCCCTTTGTGACCACGTCCCAATCTAACTGAAGAAAACGTCCTCT	2	0.17467248908296942	No Hit
CTCCACAGGCGTGCTTCTGCCCGGCTCCCATGTGGCTTCTGTGGCTCTGG	2	0.17467248908296942	No Hit
GTGAGGAAATGCCAGTCAGTGGAGATGTCCTGGAGCTCGGGAGAGAGGTC	2	0.17467248908296942	No Hit
CGTCCCAATCTAACTGAAGAAAACGTCCTCTGTGATGCACAGCCTCCTCC	2	0.17467248908296942	No Hit
ATCCAGGGAGAGGCTGGAAAACTTACGTGTTCGGTTGGAGGAAGTCTTAC	2	0.17467248908296942	No Hit
GTATCAACGCAGAGTACATGGGGATTCCTCCCCTTTGTGACCACGTCCCA	2	0.17467248908296942	No Hit
TCTCCACTGACTGGCATTTCCTCACAGATGCAGCTGGAATCTAATGATGT	2	0.17467248908296942	No Hit
CGTGGACACCAGGGCTCGAGGGACAGCAGAGCAGAGCAGGGAACCTGCCC	2	0.17467248908296942	No Hit
GTACACACCTAGGCTGAAAAAGGACTGCAAAGTATCCAAACTTTCATTCA	2	0.17467248908296942	No Hit
TCTTTCTATTCCCAGTACAGTCTTTGTTGTTGAGTGCAACCATTCTGGTG	2	0.17467248908296942	No Hit
GAAGAAAACGTCCTCTGTGATGCACAGCCTCCTCCAGCCAGTGCCCTCTG	2	0.17467248908296942	No Hit
GCTCCCATGTGGCTTCTGTGGCTCTGGGCTCATTCGAACATGCTCCCTTT	2	0.17467248908296942	No Hit
CCCATCCACAGCTGCCACTGCAGTCTCTTTGCTGGAGACTCTCCGTCCTC	2	0.17467248908296942	No Hit
GTCGGTGCGGGGGCCGGCGGCATCGACGGCGTACGACGTCGCGAGCGTCA	2	0.17467248908296942	No Hit
CCCGAGCTCCAGGACATCTCCACTGACTGGCATTTCCTCACAGATGCAGC	2	0.17467248908296942	No Hit
GCAAAGAGACTGCAGTGGCAGCTGTGGATGGGGGTGAAATCACACCAGGG	2	0.17467248908296942	No Hit
ACTGAAAGGGAGCATGTTCGAATGAGCCCAGAGCCACAGAAGCCACATGG	2	0.17467248908296942	No Hit
CTTCTGGTGCCATCGTACCCCCTGGTCACTGGAGGTCTCTCGCCCCTAGC	2	0.17467248908296942	No Hit
GCTGGAGACTCTCCGTCCTCTGCCCCAGTCCTGACCTCTCTCCCGAGCTC	2	0.17467248908296942	No Hit
TATCAACGCAGAGTACATGGGGAGCACATTTGGATGCAGAAAGACGACGA	2	0.17467248908296942	No Hit
GTGCAGACCCATCTCTCGGCGGTTGCTGTGAGCAGAGCAGAAGGGGTAGC	2	0.17467248908296942	No Hit
CGTACCCCCTGGTCACTGGAGGTCTCTCGCCCCTAGCTCCACAGGCGTGC	2	0.17467248908296942	No Hit
CCTCAGGGGCTAGGACCAGAGGTGGAATGTTCAGAAGCACGGAGGGAGGA	2	0.17467248908296942	No Hit
TTATTACATTGTTTTGACCTGTCAGTTCAAGTAAGGCTGCATTTTAGAGC	2	0.17467248908296942	No Hit
GTGATGCACAGCCTCCTCCAGCCAGTGCCCTCTGCTACCCCTTCTGCTCT	2	0.17467248908296942	No Hit
ATCAGGAAGAATCAATGATGGATTCTGGGCTTAATACTTAAGTGATGGGA	2	0.17467248908296942	No Hit
GAGAGAAGACAAGCAAGACACGACCTCGTGGACACCAGGGCTCGAGGGAC	2	0.17467248908296942	No Hit
CACCCCCTCCCCACAGGCCTCTCGTTCCTCATTCTGTGGTCGTCCAGCTT	2	0.17467248908296942	No Hit
GGTTTACAGGTCCATTCCCTCGTTTCTTATGCCAAAACAATAAACTACAG	2	0.17467248908296942	No Hit
ATTAGATTCCAGCTGCATCTGTGAGGAAATGCCAGTCAGTGGAGATGTCC	2	0.17467248908296942	No Hit
CCTCTGCCCCAGTCCTGACCTCTCTCCCGAGCTCCAGGACATCTCCACTG	2	0.17467248908296942	No Hit
GTGTAGCTTTTGGCAGAAGAAGATTGGATTTTTGGGTCACGTGGTTTCAG	2	0.17467248908296942	No Hit
GCTCTGCTCACAGCAACCGCCGAGAGATGGGTCTGCACTTGCTGTCACCC	2	0.17467248908296942	No Hit
GGGTACGATGGCACCAGAAGCTGGACGACCACAGAATGAGGAACGAGAGG	2	0.17467248908296942	No Hit
CCTGTGGAGCTAGGGGCGAGAGACCTCCAGTGACCAGGGGGTACGATGGC	2	0.17467248908296942	No Hit
TCATTAGATTCCAGCTGCATCTGTGAGGAAATGCCAGTCAGTGGAGATGT	2	0.17467248908296942	No Hit
CACATCTCCGAGCCCACGAGACATGCGCAGATCTCGTATGCCGTCTTCTG	2	0.17467248908296942	TruSeq Adapter, Index 9 (95% over 24bp)
GGACATTTGGAGGGATTTGAGGGCAATGGTGGAAAAGGAAATGTGTTCAC	2	0.17467248908296942	No Hit
GGCTGGAGGAGGCTGTGCATCACAGAGGACGTTTTCTTCAGTTAGATTGG	2	0.17467248908296942	No Hit
GCTCTGCTGTCCCTCGAGCCCTGGTGTCCACGAGGTCGTGTCTTGCTTGT	2	0.17467248908296942	No Hit
GTCCCATGGTCAAGTATATACAATTTTTCCTAGACAGAATCTATGGCTTT	2	0.17467248908296942	No Hit
CCAGGGGAATGTGCAGGGAGAGAAGACAAGCAAGACACGACCTCGTGGAC	2	0.17467248908296942	No Hit
GAGAAGACAAGCAAGACACGACCTCGTGGACACCAGGGCTCGAGGGACAG	2	0.17467248908296942	No Hit
GAGTACATGGGGAGCACATTTGGATGCAGAAAGACGACGACATCATTAGC	2	0.17467248908296942	No Hit
GAGCAGAAGGGGTAGCAGAGGGCACTGGCTGGAGGAGGCTGTGCATCACA	2	0.17467248908296942	No Hit
TCCCAATCTAACTGAAGAAAACGTCCTCTGTGATGCACAGCCTCCTCCAG	2	0.17467248908296942	No Hit
CCTCTTTGTCCCCTCTGTCCCTGGCTCGGGGCAGGTTCCCTGCTCTGCTC	2	0.17467248908296942	No Hit
CTCGTGGACACCAGGGCTCGAGGGACAGCAGAGCAGAGCAGGGAACCTGC	2	0.17467248908296942	No Hit
GCACTCTCTTGAACGTGCCTTGAGTCGTAAGGATCAGTCCCTGTCTCTTA	2	0.17467248908296942	No Hit
CCTCTGTGATGCACAGCCTCCTCCAGCCAGTGCCCTCTGCTACCCCTTCT	2	0.17467248908296942	No Hit
CAACTGAAAATTTCCTTCCATTTTAGAAGTTTTAGCTTGGTCCTACATCT	2	0.17467248908296942	No Hit
GGAAAGGAGGCAGCATTGTGCTGGTTCAAGATCTGATTTAAAGGCATTCC	2	0.17467248908296942	No Hit
GTTACAGTTCATATATGGAGAAACCGTTAGGCTGAACTCTGTCTCTTATA	2	0.17467248908296942	No Hit
CTAATATCCTGCAGTTGTTGGGAAGAAAAAGATGAAGATCAGGCCTGGAA	2	0.17467248908296942	No Hit
GCACTACACTCTCCTGGGCCACCTCCTCTTTGTCCCCTCTGTCCCTGGCT	2	0.17467248908296942	No Hit
GGGGCAGAGGACGGAGAGTCTCCAGCAAAGAGACTGCAGTGGCAGCTGTG	2	0.17467248908296942	No Hit
CCCTTTCAGTTCCCCCGGCTCTGTGGCACTACACTCTCCTGGGCCACCTC	2	0.17467248908296942	No Hit
CTGTGGCACTACACTCTCCTGGGCCACCTCCTCTTTGTCCCCTCTGTCCC	2	0.17467248908296942	No Hit
AGAGAGTACCCATTGGCAGGCAATGGCATATAAGATTAGCCAGGTAAAGT	2	0.17467248908296942	No Hit
CTTTACAAAAAAAGCTGTATATTTTTCATCTCACTGGCAACTGTCTCTTA	2	0.17467248908296942	No Hit
CCTGTGGGGAGGGGGTGACAGCAAGTGCAGACCCATCTCTCGGCGGTTGC	2	0.17467248908296942	No Hit
CTCCCCACAGGCCTCTCGTTCCTCATTCTGTGGTCGTCCAGCTTCTGGTG	2	0.17467248908296942	No Hit
CCCCGAGCCAGGGACAGAGGGGACAAAGAGGAGGTGGCCCAGGAGAGTGT	2	0.17467248908296942	No Hit
TTGGATAGCTTTGAGGATTTCGTTGGAAACGGGATTGTCTTCATATAAAC	2	0.17467248908296942	No Hit
GTATGGGTGCTGAGCCCAGACATGGACATTTTCTTAAAACTCTCCAGGTG	2	0.17467248908296942	No Hit
CTGTTGCGGTGTTTATGGGAAATCAATTTCCCGCCAGAAGCGTCGTCGCT	2	0.17467248908296942	No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA	2	0.17467248908296942	No Hit
CTCGACGCGCGAACGCGATCCGCGCAAGGGCCGCAACCCGCGCACCGGCG	2	0.17467248908296942	No Hit

Adapter Content

Adapter graph

Kmer Content

No overrepresented Kmers

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content