##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063896_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3656062 Sequences flagged as poor quality 0 Sequence length 50 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.238002801921848 32.0 32.0 32.0 32.0 32.0 2 31.2366264576476 32.0 32.0 32.0 32.0 32.0 3 31.372641656514578 32.0 32.0 32.0 32.0 32.0 4 31.499345744136726 32.0 32.0 32.0 32.0 32.0 5 31.391543141226816 32.0 32.0 32.0 32.0 32.0 6 35.007072363652476 36.0 36.0 36.0 36.0 36.0 7 35.02990731557616 36.0 36.0 36.0 36.0 36.0 8 34.95700510549329 36.0 36.0 36.0 36.0 36.0 9 35.11258698566928 36.0 36.0 36.0 36.0 36.0 10 34.910897025269264 36.0 36.0 36.0 32.0 36.0 11 35.12118120535155 36.0 36.0 36.0 36.0 36.0 12 34.99609224351228 36.0 36.0 36.0 36.0 36.0 13 35.05754689061619 36.0 36.0 36.0 36.0 36.0 14 34.992729062034506 36.0 36.0 36.0 36.0 36.0 15 34.952511746245 36.0 36.0 36.0 36.0 36.0 16 34.969568076252536 36.0 36.0 36.0 36.0 36.0 17 34.92562407311473 36.0 36.0 36.0 32.0 36.0 18 34.93059335427025 36.0 36.0 36.0 36.0 36.0 19 34.930202496565975 36.0 36.0 36.0 32.0 36.0 20 34.92675534495859 36.0 36.0 36.0 32.0 36.0 21 34.92283500662735 36.0 36.0 36.0 32.0 36.0 22 34.90463536996911 36.0 36.0 36.0 32.0 36.0 23 34.84839835867116 36.0 36.0 36.0 32.0 36.0 24 34.810351684407976 36.0 36.0 36.0 32.0 36.0 25 34.78070886106417 36.0 36.0 36.0 32.0 36.0 26 34.71310770988019 36.0 36.0 36.0 32.0 36.0 27 34.711894109016754 36.0 36.0 36.0 32.0 36.0 28 34.68895111734976 36.0 36.0 36.0 32.0 36.0 29 34.65577252245723 36.0 36.0 36.0 32.0 36.0 30 34.64433425910173 36.0 36.0 36.0 32.0 36.0 31 34.6439064764219 36.0 36.0 36.0 32.0 36.0 32 34.60291920651236 36.0 36.0 36.0 32.0 36.0 33 34.574006403611314 36.0 36.0 36.0 32.0 36.0 34 34.56631479444276 36.0 36.0 36.0 32.0 36.0 35 34.53344445471658 36.0 36.0 36.0 32.0 36.0 36 34.50492907395991 36.0 36.0 36.0 32.0 36.0 37 34.500638391799704 36.0 36.0 36.0 32.0 36.0 38 34.45764486488468 36.0 36.0 36.0 32.0 36.0 39 34.46552219300438 36.0 36.0 36.0 32.0 36.0 40 34.43972011415561 36.0 36.0 36.0 32.0 36.0 41 34.42351305858599 36.0 36.0 36.0 32.0 36.0 42 34.34896235348307 36.0 36.0 36.0 32.0 36.0 43 34.353483611601774 36.0 36.0 36.0 32.0 36.0 44 34.291012570355754 36.0 36.0 36.0 32.0 36.0 45 34.26220343090462 36.0 36.0 36.0 32.0 36.0 46 34.2538737034547 36.0 36.0 36.0 32.0 36.0 47 34.22608095814568 36.0 36.0 36.0 32.0 36.0 48 34.186599133165686 36.0 36.0 36.0 32.0 36.0 49 34.1798024759974 36.0 36.0 36.0 32.0 36.0 50 33.52081994233139 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 4.0 19 16.0 20 34.0 21 116.0 22 403.0 23 1113.0 24 2975.0 25 6860.0 26 13597.0 27 25329.0 28 41943.0 29 64975.0 30 95666.0 31 139988.0 32 208252.0 33 342916.0 34 711723.0 35 2000149.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.0862896007808 18.194311624252954 12.186328553265334 26.53307022170091 2 16.348316758022342 20.171114101596263 36.147443682235426 27.333125458145975 3 17.910317941581198 24.221037518917278 28.366222662770657 29.502421876730867 4 12.461659567042354 16.026369355880725 35.4935993973844 36.01837167969252 5 15.010576954110736 36.452992317963975 32.5631786331851 15.973252094740186 6 34.990920546370035 35.208723496378745 16.37630376112845 13.424052196122762 7 31.021833922584296 30.0358528621295 20.47428730538444 18.46802590990177 8 28.893766024755596 32.06201098340236 18.834281256718295 20.20994173512375 9 27.63771016068875 14.06770546704989 18.037659613808707 40.25692475845265 10 16.29695294919868 26.157821044538238 30.555244805358384 26.9899812009047 11 37.89313517455139 20.70057422502597 22.038463284772835 19.36782731564981 12 25.465712962666654 23.110473266173624 27.814005291487202 23.609808479672523 13 29.484199173806214 18.971795463018353 25.074650380206144 26.46935498296929 14 24.278231985989276 19.214525375288186 24.289391549420593 32.217851089301945 15 25.753814272592546 26.665415711810635 21.551508613261834 26.02926140233498 16 26.688380547987396 25.250237073899495 22.73275432688928 25.328628051223827 17 24.82952969615942 25.444207456000473 24.286650499909467 25.43961234793064 18 25.78773410472925 24.326569396092403 25.132601907629425 24.753094591548926 19 26.20967587529971 24.442692711447453 24.57116427456646 24.776467138686378 20 26.50374135230254 23.696790317149937 23.9385278735328 25.860940457014724 21 27.705410903863225 23.58589651926034 23.596098753248715 25.112593823627716 22 26.611284613099684 23.537728340195915 24.175026763798606 25.6759602829058 23 24.980880911326818 23.29123486884141 24.972237660939513 26.755646558892266 24 25.495747453874333 24.350712313442532 24.29409375431648 25.85944647836665 25 25.600520350678718 23.80125689415415 24.522510418501554 26.075712336665575 26 25.50141307071262 24.536115636560183 24.7704785840189 25.191992708708298 27 26.11268805345137 24.15681453817746 23.86505968993457 25.865437718436603 28 25.3019235797994 23.960910223824992 24.924396016074873 25.81277018030073 29 25.363316811493753 24.097551155384522 24.850265415270208 25.68886661785152 30 25.233989709868627 24.303419376191556 25.071185717450827 25.391405196488993 31 26.025183093321107 24.055292076724403 23.897952451264924 26.021572378689562 32 25.67032820349826 24.114555709855733 23.744718516449836 26.47039757019617 33 25.091632603044285 23.872809570492002 24.506879830542598 26.528677995921118 34 25.947509186384732 23.827351219408122 24.715053854616333 25.510085739590814 35 26.640287706813893 23.699104800292346 24.534812349423298 25.12579514347047 36 25.403170657251056 24.38286632754997 24.192263631320554 26.021699383878428 37 26.541154858529104 24.086253740859664 24.077446086625194 25.295145313986033 38 25.455463552111024 23.82437569427709 24.683726951915336 26.036433801696546 39 26.14707983715055 23.88429417499204 23.908337554829302 26.060288433028113 40 26.299976832407495 24.146402773108854 24.405595342848912 25.148025051634736 41 25.293310098106016 24.58982538841552 24.707934450837993 25.408930062640472 42 26.7035814385656 24.499909600384466 24.087599825929455 24.708909135120482 43 25.806329851395372 23.587353426276188 24.48067702221821 26.12563970011023 44 25.545354709977943 24.194402922307486 24.079605800304428 26.180636567410144 45 25.622372136634127 24.394148596886446 24.22207585751907 25.761403408960366 46 25.50906422335533 24.18032495428091 24.40458509275929 25.90602572960447 47 25.721174623493564 23.997724276391008 24.720977685873553 25.56012341424187 48 26.56696699653718 24.641464121794975 23.65324755605884 25.138321325609002 49 25.45660679778285 24.857954428897894 23.901593114964395 25.78384565835486 50 25.684538177600963 24.740037281130633 23.923517610068913 25.65190693119949 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 15.0 1 24.5 2 34.0 3 118.5 4 203.0 5 244.0 6 285.0 7 287.5 8 290.0 9 375.0 10 460.0 11 703.0 12 946.0 13 1891.0 14 2836.0 15 3896.5 16 4957.0 17 5231.0 18 5505.0 19 5652.0 20 5799.0 21 6659.5 22 7520.0 23 8546.0 24 9572.0 25 11854.5 26 14137.0 27 18011.0 28 21885.0 29 26457.0 30 31029.0 31 35994.5 32 40960.0 33 47929.0 34 54898.0 35 66268.0 36 77638.0 37 97383.0 38 117128.0 39 132193.0 40 147258.0 41 164639.5 42 182021.0 43 187493.0 44 192965.0 45 214851.0 46 236737.0 47 255018.0 48 273299.0 49 285050.5 50 296802.0 51 287291.5 52 277781.0 53 276417.5 54 275054.0 55 278861.5 56 282669.0 57 276722.5 58 270776.0 59 248293.0 60 225810.0 61 199449.5 62 173089.0 63 150607.5 64 128126.0 65 109395.0 66 90664.0 67 78759.0 68 66854.0 69 60681.0 70 54508.0 71 42228.5 72 29949.0 73 25431.5 74 20914.0 75 16427.0 76 11940.0 77 10448.0 78 8956.0 79 7335.0 80 5714.0 81 4605.5 82 3497.0 83 2934.0 84 2371.0 85 1707.0 86 1043.0 87 738.0 88 433.0 89 346.0 90 259.0 91 211.0 92 163.0 93 125.5 94 88.0 95 97.5 96 107.0 97 81.0 98 55.0 99 59.0 100 63.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008916697802170751 2 6.017403424777807E-4 3 3.555738387368704E-4 4 0.0 5 0.0 6 1.3675916874495017E-4 7 2.1881466999192027E-4 8 0.0 9 0.0013675916874495017 10 9.573141812146512E-4 11 1.0940733499596013E-4 12 2.7351833748990034E-5 13 5.196848412308107E-4 14 1.3675916874495017E-4 15 0.005142144744810126 16 7.93203178720711E-4 17 0.0 18 1.641110024939402E-4 19 0.0 20 8.47906846218691E-4 21 0.0 22 1.0940733499596013E-4 23 8.20555012469701E-4 24 4.6498117373283053E-4 25 0.0018052210274333424 26 0.005306255747304067 27 0.006920013938494479 28 0.004649811737328305 29 0.002543720538656073 30 0.0036104420548666847 31 0.00754910611472125 32 0.0035283865536197144 33 0.004321589732340425 34 0.0029539980448909237 35 0.0032275163823808238 36 0.00793203178720711 37 0.004130126896097494 38 0.007685865283466199 39 0.004649811737328305 40 0.002543720538656073 41 0.003254868216129814 42 0.0019966838636762724 43 0.0014222953549474816 44 0.0012855361862025316 45 0.0013675916874495017 46 0.0010940733499596013 47 0.002242850367417183 48 0.002242850367417183 49 4.6498117373283053E-4 50 0.001559054523692432 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3656062.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.5596193866511 #Duplication Level Percentage of deduplicated Percentage of total 1 74.51385765371708 33.948229937344486 2 13.798332174880393 12.572935241162646 3 4.740329370237986 6.479028056262185 4 2.1636116428082586 3.9429329178748467 5 1.1972548985288372 2.72732387428887 6 0.7208191376830654 1.9704147335672706 7 0.49591838914466435 1.5815697139390426 8 0.3544632390445239 1.2919368205942428 9 0.27260524471233044 1.1177812072708793 >10 1.5438251221854853 12.832457216274996 >50 0.10318727674064074 3.256269585966129 >100 0.07323198799177337 6.768643207909163 >500 0.014057165570418001 4.425076943727739 >1k 0.008506696754648518 7.085400543817605 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 4460 0.12198917852049557 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 4412 0.12067629050054403 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 4391 0.12010190199181524 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 4289 0.11731201494941826 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 3981 0.10888765015472932 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 3803 0.10401902374740911 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 3773 0.10319846873493939 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.1881466999192027E-4 2 0.0 0.0 0.0 0.0 2.1881466999192027E-4 3 0.0 0.0 0.0 0.0 2.1881466999192027E-4 4 0.0 0.0 0.0 0.0 2.1881466999192027E-4 5 0.0 0.0 0.0 0.0 2.461665037409103E-4 6 0.0 0.0 0.0 0.0 3.008701712388904E-4 7 0.0 0.0 0.0 0.0 3.282220049878804E-4 8 0.0 0.0 0.0 0.0 3.5557383873687046E-4 9 0.0 0.0 0.0 0.0 4.102775062348505E-4 10 0.0 0.0 0.0 0.0 4.102775062348505E-4 11 0.0 0.0 0.0 0.0 4.102775062348505E-4 12 0.0 0.0 0.0 0.0 7.658513449717209E-4 13 0.0 0.0 0.0 5.470366749798007E-5 7.93203178720711E-4 14 0.0 0.0 0.0 5.470366749798007E-5 7.93203178720711E-4 15 0.0 0.0 0.0 1.0940733499596013E-4 0.0010393696824616213 16 0.0 0.0 0.0 1.0940733499596013E-4 0.0011761288512065714 17 0.0 0.0 0.0 1.0940733499596013E-4 0.0012308325187045516 18 0.0 0.0 0.0 1.641110024939402E-4 0.0012581843524535415 19 0.0 0.0 0.0 1.641110024939402E-4 0.0012581843524535415 20 0.0 0.0 0.0 2.1881466999192027E-4 0.0013675916874495017 21 0.0 0.0 0.0 3.008701712388904E-4 0.0014496471886964717 22 5.470366749798007E-5 0.0 0.0 4.3762933998384054E-4 0.0014769990224454618 23 5.470366749798007E-5 0.0 0.0 7.658513449717209E-4 0.001559054523692432 24 5.470366749798007E-5 0.0 0.0 0.0012855361862025316 0.001586406357441422 25 5.470366749798007E-5 0.0 0.0 0.0015317026899434418 0.001586406357441422 26 5.470366749798007E-5 0.0 0.0 0.0019146283624293023 0.001668461858688392 27 5.470366749798007E-5 0.0 0.0 0.0022154985336681927 0.001668461858688392 28 5.470366749798007E-5 0.0 0.0 0.0035283865536197144 0.001668461858688392 29 5.470366749798007E-5 0.0 0.0 0.005661829586040937 0.001668461858688392 30 5.470366749798007E-5 0.0 0.0 0.009627845479644492 0.001668461858688392 31 5.470366749798007E-5 0.0 0.0 0.019802727634268786 0.0017505173599353622 32 5.470366749798007E-5 0.0 0.0 0.03241192299255319 0.0017505173599353622 33 5.470366749798007E-5 0.0 0.0 0.04447408167585779 0.0017505173599353622 34 5.470366749798007E-5 0.0 0.0 0.05910731273156746 0.0018052210274333421 35 5.470366749798007E-5 0.0 0.0 0.0751901909759736 0.0018052210274333421 36 5.470366749798007E-5 0.0 0.0 0.09876747166760301 0.0018052210274333421 37 5.470366749798007E-5 0.0 0.0 0.13385987436755722 0.0018052210274333421 38 5.470366749798007E-5 0.0 0.0 0.18539072915065444 0.0019146283624293023 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4980 0.0 24.8709 1 TAACGGC 415 0.0 19.085714 36 TTAACGG 465 0.0 17.979792 35 AACGCAG 7220 0.0 17.062374 6 ATACGAA 1330 0.0 17.037424 40 CGCAATA 1375 0.0 16.961224 36 TCAACGC 7370 0.0 16.565866 4 ACCGTCG 1145 0.0 16.52295 8 TACCGTC 1190 0.0 16.452719 7 GGTATCA 2385 0.0 16.4189 1 CAACGCA 7575 0.0 16.204672 5 CGTCGTA 1150 0.0 16.068964 10 ATCAACG 7730 0.0 15.936439 3 CAATACG 1450 0.0 15.932184 38 TAGCGGC 1465 0.0 15.919672 30 TCTAGCG 1465 0.0 15.919455 28 TATCAAC 7820 0.0 15.865332 2 ATACCGT 1235 0.0 15.853009 6 TACGAAT 1420 0.0 15.8028755 41 GTATTAG 1075 0.0 15.757768 1 >>END_MODULE