FastQCFastQC Report
Thu 2 Feb 2017
SRR4063892_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063892_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39317
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGATGCCTTGCGCGTCGCCCGAGGTCGGAGTTGGCGGCATTCTTG710.18058346262431008No Hit
CCCTTTGGAATGTCCACGCGTTTGACCGGTGACGGAAAGTAGCTACCCGA620.1576926011648905No Hit
TTCCAAAGGGTGATGGCAACACGCGTCCTCTGGGGATTCCTACGATTGCT600.15260574306279726No Hit
GTACATGGGTGCCGCTCCATCCATTTATCGAACGCATAATGCAAAAAGAG460.11699773634814457No Hit
ATATAGCGCTGTCCACCGGCAGTCGGTGTGTCGCTGCACAGCCTTCATCA450.11445430729709796No Hit
CTGTACATGATGCCTTGCGCGTCGCCCGAGGTCGGAGTTGGCGGCATTCT420.10682402014395807No Hit
GATGAAGGCTGTGCAGCGACACACCGACTGCCGGTGGACAGCGCTATATA420.10682402014395807No Hit
CTTATACACATCTCCGAGCCCACGAGACCGGAGCCTATCTCGTATGCCGT400.10173716204186485No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACCTC300.005679306629.33248731
AGCCGCT300.005679306629.33248743
GAGTCTC654.8173638E-420.3071067
GTCTCTG600.00728965918.3328049
Produced by FastQC (version 0.11.5)