##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063890_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 692499 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.37497671476782 32.0 32.0 32.0 32.0 32.0 2 31.43856236615504 32.0 32.0 32.0 32.0 32.0 3 31.483147268082696 32.0 32.0 32.0 32.0 32.0 4 31.560626080326468 32.0 32.0 32.0 32.0 32.0 5 31.525197870321833 32.0 32.0 32.0 32.0 32.0 6 35.10649834873408 36.0 36.0 36.0 36.0 36.0 7 35.12459656981454 36.0 36.0 36.0 36.0 36.0 8 35.072517072226816 36.0 36.0 36.0 36.0 36.0 9 35.18096777035057 36.0 36.0 36.0 36.0 36.0 10 35.042535801495745 36.0 36.0 36.0 36.0 36.0 11 35.17675837799044 36.0 36.0 36.0 36.0 36.0 12 35.09090843452481 36.0 36.0 36.0 36.0 36.0 13 35.122839166554755 36.0 36.0 36.0 36.0 36.0 14 35.08493586272327 36.0 36.0 36.0 36.0 36.0 15 35.04535602217476 36.0 36.0 36.0 36.0 36.0 16 35.06198998121297 36.0 36.0 36.0 36.0 36.0 17 35.035062866516775 36.0 36.0 36.0 36.0 36.0 18 35.028983435355144 36.0 36.0 36.0 36.0 36.0 19 35.04175457293079 36.0 36.0 36.0 36.0 36.0 20 35.01865706665281 36.0 36.0 36.0 36.0 36.0 21 35.02092999412274 36.0 36.0 36.0 36.0 36.0 22 35.00880867698004 36.0 36.0 36.0 36.0 36.0 23 34.94302374443862 36.0 36.0 36.0 36.0 36.0 24 34.935924817219956 36.0 36.0 36.0 36.0 36.0 25 34.90351899425126 36.0 36.0 36.0 32.0 36.0 26 34.842945621582125 36.0 36.0 36.0 32.0 36.0 27 34.84829580981344 36.0 36.0 36.0 32.0 36.0 28 34.82579180619756 36.0 36.0 36.0 32.0 36.0 29 34.80530802210545 36.0 36.0 36.0 32.0 36.0 30 34.79745241509374 36.0 36.0 36.0 32.0 36.0 31 34.78491810096477 36.0 36.0 36.0 32.0 36.0 32 34.752702891989735 36.0 36.0 36.0 32.0 36.0 33 34.734903588308434 36.0 36.0 36.0 32.0 36.0 34 34.73188697745412 36.0 36.0 36.0 32.0 36.0 35 34.689473919817935 36.0 36.0 36.0 32.0 36.0 36 34.680442859845286 36.0 36.0 36.0 32.0 36.0 37 34.668281109431206 36.0 36.0 36.0 32.0 36.0 38 34.64670418296633 36.0 36.0 36.0 32.0 36.0 39 34.627215346159346 36.0 36.0 36.0 32.0 36.0 40 34.62475613683197 36.0 36.0 36.0 32.0 36.0 41 34.609189327349206 36.0 36.0 36.0 32.0 36.0 42 34.57394739920202 36.0 36.0 36.0 32.0 36.0 43 34.55840225040036 36.0 36.0 36.0 32.0 36.0 44 34.51585634058677 36.0 36.0 36.0 32.0 36.0 45 34.48252344046706 36.0 36.0 36.0 32.0 36.0 46 34.47064616699807 36.0 36.0 36.0 32.0 36.0 47 34.46079055709828 36.0 36.0 36.0 32.0 36.0 48 34.42348942020133 36.0 36.0 36.0 32.0 36.0 49 34.397993354503036 36.0 36.0 36.0 32.0 36.0 50 33.820272664653665 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 2.0 21 20.0 22 52.0 23 178.0 24 536.0 25 1157.0 26 2392.0 27 4440.0 28 7301.0 29 11329.0 30 16472.0 31 23616.0 32 33620.0 33 54475.0 34 114857.0 35 422050.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.33589292187358 18.108571420318906 12.84810428217189 26.707431375635625 2 15.671236595629157 20.513705454744997 37.27072135948407 26.544336590141775 3 18.00064116264159 23.909012667294352 29.10993917619265 28.980406993871412 4 12.9324374475631 16.920602051410903 35.65376989714065 34.493190603885346 5 14.617205223401045 36.48568445586203 33.726113683918676 15.170996636818249 6 33.85097697174139 35.45242795275648 17.062889803132723 13.633705272369411 7 30.271812666877494 30.590080274484148 20.65519228186611 18.48291477677224 8 27.763794604757553 33.66084283154199 19.269775118808834 19.305587444891618 9 27.492880784182343 14.680313996407179 18.24425408524575 39.58255113416473 10 15.904177816029378 27.39847882499556 32.04344894013063 24.653894418844434 11 36.51470976853396 21.296204037839768 22.845087140920057 19.343999052706213 12 24.61364509355984 23.511403643043014 29.085571366271097 22.789379897126057 13 29.934512162542692 19.970830114296852 24.889565989646133 25.205091733514323 14 23.723389814844232 19.410741980482253 25.44989299608085 31.415975208592663 15 25.21185216848818 27.19274937036438 22.14454469835255 25.45085376279489 16 25.396502202910355 25.848059113954942 23.7850779719073 24.970360711227404 17 24.020540101862963 25.980687336732615 25.22848408445355 24.77028847695087 18 24.507433977957994 25.80505880178369 25.66325292853677 24.02425429172154 19 25.58328604084627 25.28148055087444 25.236715143270967 23.898518265008324 20 25.967188305508905 24.841840470067016 24.910144015064326 24.28082720935975 21 26.240471105373437 24.65028830366542 24.66934970303206 24.43989088792908 22 26.095488946554436 24.461118355405567 24.904584699761298 24.538807998278696 23 25.202817641741298 24.82461941908522 24.904042489898828 25.06852044927465 24 25.062671842147825 24.7909013192856 25.118267831149925 25.02815900741665 25 24.99682306799212 24.61530241504595 25.202168400501378 25.185706116460548 26 24.93725323698203 25.25120366920542 25.24947073213703 24.56207236167552 27 25.42850912472796 25.06271129409828 24.64737984487168 24.86139973630208 28 25.150944949319175 25.02877376814336 24.853459567259854 24.966821715277607 29 25.03418846617616 25.143649320923917 24.847180805360406 24.974981407539513 30 25.387344740790592 25.035127824847535 24.81533522703478 24.762192207327093 31 25.161240010051326 24.7863371295379 25.022745455963353 25.02967740444742 32 25.19531306409734 24.918914391504135 24.78807991011989 25.097692634278634 33 24.924293077130805 25.042564836462937 24.971515134886126 25.061626951520132 34 25.309286464177355 24.85844376957635 25.040253812017948 24.792015954228347 35 25.182750543702724 24.903606489196704 25.18722724607711 24.72641572102346 36 24.987074729724657 24.892626386036664 25.234460070301918 24.885838813936765 37 25.427385604491775 24.771324512683655 24.99992779428882 24.801362088535754 38 25.01112003281132 24.897175800497948 24.921293274257557 25.170410892433175 39 25.422438903225714 24.976930308592323 24.5828321060787 25.017798682103265 40 25.46474065067301 24.730715411064246 24.99527064202298 24.809273296239766 41 24.96747184383019 24.733817874095458 25.455574697787796 24.843135584286554 42 25.384085523380158 24.878229112664606 25.020036419351065 24.71764894460417 43 25.186104039197733 24.317064964208818 25.31144899052548 25.185382006067968 44 24.846099082876165 24.743137455938054 25.02198584530341 25.388777615882375 45 24.913753640831025 24.934692480646014 25.014837695110277 25.136716183412684 46 24.787758974484866 24.69476137596012 25.074549705339134 25.44292994421588 47 24.831476250714818 24.570242778172492 25.491419296330314 25.106861674782376 48 24.89537694624873 24.785483027815726 25.077907712213676 25.241232313721866 49 25.154586176919945 24.707217679864375 25.04223863311451 25.09595751010117 50 24.73765002000026 25.02126381425896 25.170579834250557 25.07050633149023 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1.0 1 5.0 2 9.0 3 21.5 4 34.0 5 46.0 6 58.0 7 59.0 8 60.0 9 74.0 10 88.0 11 135.5 12 183.0 13 372.0 14 561.0 15 731.0 16 901.0 17 872.5 18 844.0 19 878.0 20 912.0 21 1060.5 22 1209.0 23 1569.0 24 1929.0 25 2700.0 26 3471.0 27 4536.0 28 5601.0 29 7045.5 30 8490.0 31 10028.0 32 11566.0 33 13544.5 34 15523.0 35 18283.5 36 21044.0 37 23344.0 38 25644.0 39 28007.0 40 30370.0 41 33017.5 42 35665.0 43 37817.0 44 39969.0 45 43502.5 46 47036.0 47 49478.0 48 51920.0 49 53161.5 50 54403.0 51 55280.5 52 56158.0 53 55626.0 54 55094.0 55 52815.0 56 50536.0 57 48095.0 58 45654.0 59 41881.0 60 38108.0 61 33551.0 62 28994.0 63 24516.0 64 20038.0 65 17206.5 66 14375.0 67 12115.5 68 9856.0 69 8046.5 70 6237.0 71 4832.5 72 3428.0 73 2913.0 74 2398.0 75 1980.0 76 1562.0 77 1303.0 78 1044.0 79 875.0 80 706.0 81 551.5 82 397.0 83 316.5 84 236.0 85 169.5 86 103.0 87 70.0 88 37.0 89 29.0 90 21.0 91 13.5 92 6.0 93 5.5 94 5.0 95 6.5 96 8.0 97 6.5 98 5.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.010108317845946348 2 1.444045406563764E-4 3 0.0010108317845946347 4 0.0 5 0.0 6 2.888090813127528E-4 7 0.0 8 0.0 9 0.0010108317845946347 10 0.0011552363252510113 11 0.0 12 1.444045406563764E-4 13 5.776181626255056E-4 14 1.444045406563764E-4 15 0.005054158922973174 16 8.664272439382584E-4 17 0.0 18 4.332136219691292E-4 19 0.0 20 2.888090813127528E-4 21 0.0 22 0.0 23 7.22022703281882E-4 24 4.332136219691292E-4 25 0.0010108317845946347 26 0.004765349841660421 27 0.005776181626255056 28 0.004043327138378539 29 0.0020216635691892694 30 0.004043327138378539 31 0.007653440654787949 32 0.003032495353783904 33 0.0037545180570657866 34 0.002599281731814775 35 0.0036101135164094103 36 0.008231058817413456 37 0.004765349841660421 38 0.007942249736100701 39 0.004620945301004045 40 0.0023104726505020225 41 0.003176899894440281 42 0.001444045406563764 43 0.001444045406563764 44 0.0011552363252510113 45 8.664272439382584E-4 46 0.0011552363252510113 47 0.0021660681098456458 48 0.0018772590285328933 49 7.22022703281882E-4 50 0.0011552363252510113 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 692499.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.8319754381801 #Duplication Level Percentage of deduplicated Percentage of total 1 62.93109807199128 30.101187372771903 2 16.745058220987968 16.018984270743843 3 7.832975965840442 11.240001420178054 4 4.2272263859542925 8.087863546583703 5 2.5074931766734245 5.996917601902372 6 1.5853576365778423 4.549847252011356 7 1.052392599419882 3.5236611876742012 8 0.7464386863171859 2.856290952802485 9 0.5163975686347068 2.2230284237344096 >10 1.8003057366283917 13.068393332002346 >50 0.03977220073980638 1.2664628841621586 >100 0.015483750234810903 1.0673617554331336 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 0.0 0.0 16 0.0 0.0 0.0 0.0 0.0 17 0.0 0.0 0.0 0.0 0.0 18 0.0 0.0 0.0 0.0 0.0 19 0.0 0.0 0.0 1.444045406563764E-4 0.0 20 0.0 0.0 0.0 2.888090813127528E-4 0.0 21 0.0 0.0 0.0 2.888090813127528E-4 0.0 22 0.0 0.0 0.0 2.888090813127528E-4 0.0 23 0.0 0.0 0.0 2.888090813127528E-4 0.0 24 0.0 0.0 0.0 2.888090813127528E-4 0.0 25 0.0 0.0 0.0 5.776181626255056E-4 0.0 26 0.0 0.0 0.0 7.22022703281882E-4 0.0 27 0.0 0.0 0.0 0.0010108317845946347 0.0 28 0.0 0.0 0.0 0.002166068109845646 0.0 29 0.0 0.0 0.0 0.005054158922973174 0.0 30 0.0 0.0 0.0 0.010974745089884606 0.0 31 0.0 0.0 0.0 0.026570435480773258 0.0 32 0.0 0.0 0.0 0.045487430306758565 0.0 33 0.0 0.0 0.0 0.06714811140521502 0.0 34 0.0 0.0 0.0 0.09068605153220438 0.0 35 0.0 0.0 0.0 0.1181229142569159 0.0 36 0.0 0.0 0.0 0.15841178110004492 0.0 37 0.0 0.0 0.0 0.2252710834239472 0.0 38 0.0 0.0 0.0 0.32519902555815966 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 290 0.0 30.355188 1 GATTTCG 45 4.0676096E-5 29.332756 41 GTATCAA 715 0.0 27.701763 1 GCGATTC 40 7.029889E-4 27.499458 13 ATATGCT 85 2.3500797E-7 23.29366 4 TACGACC 50 0.0025796304 21.999567 4 TAAGGTT 50 0.0025796304 21.999567 4 TAGGACG 80 3.6124693E-6 21.999567 4 AATAGAG 95 6.8588815E-7 20.841696 5 TCTATAC 75 5.4691372E-5 20.532928 3 ATTTCGT 65 4.929893E-4 20.307291 42 CTAATAG 90 1.0011172E-5 19.555172 3 TTCGTAT 80 8.9778885E-5 19.25101 25 GTAGGAC 160 5.2750693E-11 19.24962 3 CGCTAGA 80 8.982868E-5 19.24962 37 GTACACT 165 8.185452E-11 18.666298 4 TGCGATT 60 0.0074098255 18.332972 12 TATCAAC 1105 0.0 18.316381 2 TCAACGC 1120 0.0 18.071074 4 ATCAACG 1130 0.0 17.911152 3 >>END_MODULE