FastQCFastQC Report
Thu 2 Feb 2017
SRR4063879_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4063879_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2746974
Sequences flagged as poor quality0
Sequence length50
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATCAA27800.028.091911
GGTATCA12000.024.9318981
TCAACGC40650.018.7236064
TATCAAC42750.018.3187472
CAACGCA42050.018.100235
ATCAACG43050.017.6797833
AACGCAG43550.017.5778226
GTAGGAC14450.016.7455273
GTATAAC3150.016.0625691
GTCCTAC13750.015.5191071
TGTAGGA15350.015.33406452
GTATAAT2601.8189894E-1215.2298951
TCTATAC2900.015.1707133
TAGGACG10750.015.14248854
ACGCAGA50700.015.011857
TCCTACA14250.014.8196612
TAGGACC10700.014.8020774
TAAGACT4500.014.6650234
TAGGACA6750.014.6650224
ACCGTCG3600.014.6647568
Produced by FastQC (version 0.11.5)