##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063879_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2746974 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.361760613678907 32.0 32.0 32.0 32.0 32.0 2 31.44766459384035 32.0 32.0 32.0 32.0 32.0 3 31.51107873609288 32.0 32.0 32.0 32.0 32.0 4 31.585920361823593 32.0 32.0 32.0 32.0 32.0 5 31.55266012710714 32.0 32.0 32.0 32.0 32.0 6 35.15453185942059 36.0 36.0 36.0 36.0 36.0 7 35.168487215386826 36.0 36.0 36.0 36.0 36.0 8 35.11689153228243 36.0 36.0 36.0 36.0 36.0 9 35.21002819830111 36.0 36.0 36.0 36.0 36.0 10 35.08398441339452 36.0 36.0 36.0 36.0 36.0 11 35.21311159115449 36.0 36.0 36.0 36.0 36.0 12 35.133313602531366 36.0 36.0 36.0 36.0 36.0 13 35.16806129217095 36.0 36.0 36.0 36.0 36.0 14 35.109210716956184 36.0 36.0 36.0 36.0 36.0 15 35.084678267795766 36.0 36.0 36.0 36.0 36.0 16 35.10266824513082 36.0 36.0 36.0 36.0 36.0 17 35.07167049997561 36.0 36.0 36.0 36.0 36.0 18 35.06985067932933 36.0 36.0 36.0 36.0 36.0 19 35.06077451042493 36.0 36.0 36.0 36.0 36.0 20 35.05797324619745 36.0 36.0 36.0 36.0 36.0 21 35.05029789142525 36.0 36.0 36.0 36.0 36.0 22 35.03624060511676 36.0 36.0 36.0 36.0 36.0 23 34.98761400726763 36.0 36.0 36.0 36.0 36.0 24 34.963228629029615 36.0 36.0 36.0 36.0 36.0 25 34.93960044761982 36.0 36.0 36.0 36.0 36.0 26 34.88267235146747 36.0 36.0 36.0 32.0 36.0 27 34.870883379311195 36.0 36.0 36.0 32.0 36.0 28 34.851841699266174 36.0 36.0 36.0 32.0 36.0 29 34.825495618087395 36.0 36.0 36.0 32.0 36.0 30 34.81199530829196 36.0 36.0 36.0 32.0 36.0 31 34.80469818789694 36.0 36.0 36.0 32.0 36.0 32 34.774419051654654 36.0 36.0 36.0 32.0 36.0 33 34.75893000807434 36.0 36.0 36.0 32.0 36.0 34 34.75600751954696 36.0 36.0 36.0 32.0 36.0 35 34.72335886688407 36.0 36.0 36.0 32.0 36.0 36 34.699902510908366 36.0 36.0 36.0 32.0 36.0 37 34.68444623065235 36.0 36.0 36.0 32.0 36.0 38 34.65816458401135 36.0 36.0 36.0 32.0 36.0 39 34.64264860169772 36.0 36.0 36.0 32.0 36.0 40 34.63778506822416 36.0 36.0 36.0 32.0 36.0 41 34.625441667813384 36.0 36.0 36.0 32.0 36.0 42 34.5778973517769 36.0 36.0 36.0 32.0 36.0 43 34.57035487048658 36.0 36.0 36.0 32.0 36.0 44 34.524725024699904 36.0 36.0 36.0 32.0 36.0 45 34.49605820805002 36.0 36.0 36.0 32.0 36.0 46 34.47788512013583 36.0 36.0 36.0 32.0 36.0 47 34.454372702471886 36.0 36.0 36.0 32.0 36.0 48 34.42203857772225 36.0 36.0 36.0 32.0 36.0 49 34.40549965161665 36.0 36.0 36.0 32.0 36.0 50 33.83196819482092 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 3.0 19 10.0 20 24.0 21 72.0 22 258.0 23 858.0 24 1994.0 25 4610.0 26 9487.0 27 16979.0 28 28453.0 29 43765.0 30 63228.0 31 90144.0 32 129960.0 33 211171.0 34 450078.0 35 1695877.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.94038962348677 17.35975822649919 11.523961636915239 27.175890513098793 2 16.16298884476336 19.91244142162921 37.04264458068389 26.881925152923543 3 18.57562124904349 23.57448181011341 28.474287632245904 29.375609308597195 4 12.729315967315308 15.850022606693765 35.280930944377346 36.13973048161358 5 14.496860909495322 36.52564603814962 33.48415383618483 15.493339216170229 6 34.8993271488154 34.86827471899007 16.627684278697195 13.60471385349733 7 30.732152153099594 30.101457241979347 20.444817380604814 18.721573224316245 8 28.056654340375992 33.431332076677826 19.001271945056633 19.51074163788955 9 27.58299328816548 14.148876258264199 17.967854400843994 40.300276052726325 10 15.790075309061297 26.786283099018654 31.969710373006833 25.45393121891322 11 37.289031494291535 20.664447497500888 22.693443767578433 19.353077240629144 12 25.063961522611873 23.017265606684326 28.86706924444587 23.051703626257936 13 29.938160707895534 19.37473402406079 24.831750310070156 25.855354957973525 14 23.611667280677867 19.264176742032294 24.910555799056706 32.21360017823313 15 25.25468347093989 27.22025046225828 21.753279494517518 25.771786572284306 16 25.741876814738664 25.464514851369806 23.65148717560409 25.142121158287438 17 24.3595680192095 25.737447824406058 24.978576426278515 24.924407730105926 18 24.991699915543002 24.851253749599557 25.831683024143054 24.32536331071439 19 25.93815083002272 24.55895998977784 24.93901468998785 24.56387449021159 20 26.07338892460522 24.465644492044643 24.65698369903537 24.80398288431477 21 26.358167205077297 24.167429324048936 24.269032033066203 25.205371437807568 22 26.07565712355277 24.37775121115177 24.44535291950555 25.10123874578991 23 24.9420811751806 24.329000767397126 24.95831737622991 25.770600681192363 24 25.29079418702857 24.533375076448145 24.878665870635174 25.29716486588811 25 25.264940935945653 24.255342230771554 25.123401262426132 25.356315570856662 26 24.9627388119961 24.785807328167127 25.22711667939651 25.02433718044026 27 25.304689249184964 24.87579250877835 24.564195258872548 25.255322983164135 28 25.05805700963533 24.623525912593575 24.87537629206198 25.44304078570911 29 25.134078220425614 24.692490163471312 24.708581006107238 25.464850609995835 30 25.02496485988916 24.737618685474075 24.98164268231993 25.255773772316836 31 25.49297441153074 24.345798390458526 24.594310720507366 25.56691647750337 32 25.294342714997324 24.76264915542453 24.443378185383214 25.49962994419493 33 24.913246018709444 24.615632171856618 24.915976420974147 25.555145388459792 34 25.360671391766182 24.50341131118781 25.149596398255337 24.98632089879067 35 25.58375150351962 24.486728253936818 25.056209062764843 24.873311179778717 36 25.087757620769118 24.684811615097004 24.880750845538575 25.346679918595292 37 25.599575078762605 24.461804051313827 24.56046208364308 25.37815878628049 38 25.16368423505289 24.76557767137332 24.7433332168321 25.327404876741692 39 25.57717742337703 24.44191711332835 24.535078065528666 25.445827397765957 40 25.82400800317739 24.439579177905056 24.858559202361636 24.877853616555917 41 25.21099415809299 24.463381505615285 25.209101099175534 25.11652323711619 42 25.693312621658944 24.797036390926422 24.824994967092245 24.68465602032239 43 25.148065672026483 24.361585672405088 25.06480887888011 25.425539776688318 44 24.883779515634522 24.635102263104976 24.889895425226815 25.591222796033687 45 24.911128156383867 24.771153865056046 24.965516086486275 25.35220189207382 46 25.040718005695062 24.361417168618775 25.014689061509127 25.583175764177035 47 25.313062225099003 24.450161600467148 25.085241607078242 25.151534567355615 48 25.279959110552586 24.89236122361089 24.61233840531883 25.215341260517693 49 25.118785857821006 24.598938462882604 24.76978186795585 25.512493811340537 50 24.89866022169339 25.08166338848183 24.723920774590844 25.29575561523393 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 26.0 1 33.0 2 40.0 3 175.5 4 311.0 5 331.0 6 351.0 7 335.5 8 320.0 9 408.5 10 497.0 11 708.0 12 919.0 13 1725.0 14 2531.0 15 3184.0 16 3837.0 17 3846.0 18 3855.0 19 3779.0 20 3703.0 21 4325.0 22 4947.0 23 6035.5 24 7124.0 25 9594.5 26 12065.0 27 16103.0 28 20141.0 29 24757.5 30 29374.0 31 35020.0 32 40666.0 33 49004.0 34 57342.0 35 67834.5 36 78327.0 37 89297.5 38 100268.0 39 108045.5 40 115823.0 41 125693.0 42 135563.0 43 141856.0 44 148149.0 45 161709.5 46 175270.0 47 185824.5 48 196379.0 49 204032.5 50 211686.0 51 213081.0 52 214476.0 53 214091.0 54 213706.0 55 211170.0 56 208634.0 57 201928.5 58 195223.0 59 179310.0 60 163397.0 61 144083.5 62 124770.0 63 108789.0 64 92808.0 65 78377.5 66 63947.0 67 53594.0 68 43241.0 69 36892.0 70 30543.0 71 24013.0 72 17483.0 73 14520.5 74 11558.0 75 9034.0 76 6510.0 77 5517.0 78 4524.0 79 3780.0 80 3036.0 81 2389.5 82 1743.0 83 1371.0 84 999.0 85 720.0 86 441.0 87 302.5 88 164.0 89 128.0 90 92.0 91 80.5 92 69.0 93 50.0 94 31.0 95 28.5 96 26.0 97 26.0 98 26.0 99 19.5 100 13.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009865400983045343 2 4.7324801763686154E-4 3 2.912295493149917E-4 4 0.0 5 0.0 6 2.548258556506177E-4 7 1.4561477465749586E-4 8 0.0 9 0.0012741292782530887 10 9.82899728938097E-4 11 0.0 12 3.6403693664373966E-4 13 5.460554049656094E-4 14 3.6403693664373966E-4 15 0.0048416912573617365 16 8.008812606162271E-4 17 0.0 18 5.096517113012354E-4 19 3.6403693664373964E-5 20 7.280738732874793E-4 21 0.0 22 7.280738732874793E-5 23 9.464960352737231E-4 24 5.096517113012354E-4 25 0.0014925514402393326 26 0.005387746662327346 27 0.0057881872926354595 28 0.003822387834759266 29 0.0025482585565061774 30 0.004113617384074258 31 0.008336445849141639 32 0.0033127361234580304 33 0.004586865401711119 34 0.003021506574143039 35 0.003130717655136161 36 0.007426353507532288 37 0.0040772136904098834 38 0.00808161999349102 39 0.004186424771403006 40 0.0023662400881843074 41 0.0035311582854442745 42 0.00192939576421182 43 0.001856588376883072 44 0.0014561477465749586 45 0.0014925514402393326 46 0.0011649181972599669 47 0.0027666807184924215 48 0.002002203151540568 49 5.096517113012354E-4 50 9.82899728938097E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2746974.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.27480064659162 #Duplication Level Percentage of deduplicated Percentage of total 1 81.73553796442425 48.448577185831695 2 10.472393289688684 12.414980490780012 3 3.055401842523234 5.433250053323803 4 1.3202974836363406 3.1304148054696266 5 0.7999838449405607 2.3709441464672802 6 0.509086701025496 1.8105607629070357 7 0.3418383460587533 1.418367987119524 8 0.27446828417768104 1.301524226275528 9 0.19299998951031191 1.0296032312716212 >10 1.176242702608608 12.75626510741833 >50 0.07501076580298273 3.0588951779196556 >100 0.0422866372113888 4.8669378612729775 >500 0.0036482882654243383 1.4003937862544895 >1k 8.038601262555386E-4 0.5592851776881419 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.6403693664373964E-5 2 0.0 0.0 0.0 0.0 3.6403693664373964E-5 3 0.0 0.0 0.0 0.0 3.6403693664373964E-5 4 0.0 0.0 0.0 0.0 7.280738732874793E-5 5 0.0 0.0 0.0 3.6403693664373964E-5 7.280738732874793E-5 6 0.0 0.0 0.0 3.6403693664373964E-5 2.1842216198624377E-4 7 0.0 0.0 0.0 3.6403693664373964E-5 2.1842216198624377E-4 8 0.0 0.0 0.0 3.6403693664373964E-5 2.548258556506177E-4 9 0.0 0.0 0.0 1.0921108099312189E-4 2.548258556506177E-4 10 0.0 0.0 0.0 1.0921108099312189E-4 2.912295493149917E-4 11 0.0 0.0 0.0 1.0921108099312189E-4 2.912295493149917E-4 12 0.0 0.0 0.0 1.0921108099312189E-4 4.004406303081136E-4 13 0.0 0.0 0.0 1.4561477465749586E-4 5.460554049656095E-4 14 0.0 0.0 0.0 1.4561477465749586E-4 5.460554049656095E-4 15 0.0 0.0 0.0 1.4561477465749586E-4 6.188627922943574E-4 16 0.0 0.0 0.0 1.4561477465749586E-4 6.188627922943574E-4 17 0.0 0.0 0.0 1.820184683218698E-4 6.188627922943574E-4 18 0.0 0.0 0.0 1.820184683218698E-4 6.916701796231053E-4 19 0.0 0.0 0.0 2.548258556506177E-4 7.280738732874792E-4 20 0.0 0.0 0.0 2.912295493149917E-4 7.644775669518533E-4 21 0.0 0.0 0.0 2.912295493149917E-4 8.008812606162272E-4 22 0.0 0.0 0.0 3.2763324297936566E-4 8.008812606162272E-4 23 0.0 0.0 0.0 5.096517113012354E-4 8.008812606162272E-4 24 0.0 0.0 0.0 6.188627922943574E-4 8.008812606162272E-4 25 0.0 0.0 0.0 9.10092341609349E-4 8.008812606162272E-4 26 0.0 0.0 0.0 0.0010557071162668448 8.008812606162272E-4 27 0.0 0.0 0.0 0.0014561477465749584 8.372849542806011E-4 28 0.0 0.0 0.0 0.002803084412156795 8.372849542806011E-4 29 0.0 0.0 0.0 0.005933802067292956 9.10092341609349E-4 30 0.0 0.0 0.0 0.012559274314209017 9.10092341609349E-4 31 0.0 0.0 0.0 0.03538439024177149 9.46496035273723E-4 32 0.0 0.0 0.0 0.05817310247566959 0.0010193034226024709 33 0.0 0.0 0.0 0.0827819993927864 0.0010557071162668448 34 0.0 0.0 0.0 0.1112860915319912 0.0012013218909243408 35 0.0 0.0 0.0 0.14171957943540783 0.0012013218909243408 36 0.0 0.0 0.0 0.18620489309327282 0.0012013218909243408 37 0.0 0.0 0.0 0.25915789519667826 0.0012013218909243408 38 0.0 0.0 0.0 0.3541351319670299 0.0012377255845887147 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 2780 0.0 28.09191 1 GGTATCA 1200 0.0 24.931898 1 TCAACGC 4065 0.0 18.723606 4 TATCAAC 4275 0.0 18.318747 2 CAACGCA 4205 0.0 18.10023 5 ATCAACG 4305 0.0 17.679783 3 AACGCAG 4355 0.0 17.577822 6 GTAGGAC 1445 0.0 16.745527 3 GTATAAC 315 0.0 16.062569 1 GTCCTAC 1375 0.0 15.519107 1 TGTAGGA 1535 0.0 15.3340645 2 GTATAAT 260 1.8189894E-12 15.229895 1 TCTATAC 290 0.0 15.170713 3 TAGGACG 1075 0.0 15.1424885 4 ACGCAGA 5070 0.0 15.01185 7 TCCTACA 1425 0.0 14.819661 2 TAGGACC 1070 0.0 14.802077 4 TAAGACT 450 0.0 14.665023 4 TAGGACA 675 0.0 14.665022 4 ACCGTCG 360 0.0 14.664756 8 >>END_MODULE