##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063876_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3501900 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.34990576544162 32.0 32.0 32.0 32.0 32.0 2 31.41071703932151 32.0 32.0 32.0 32.0 32.0 3 31.485052685684913 32.0 32.0 32.0 32.0 32.0 4 31.569394899911476 32.0 32.0 32.0 32.0 32.0 5 31.52204631771324 32.0 32.0 32.0 32.0 32.0 6 35.1117173534367 36.0 36.0 36.0 36.0 36.0 7 35.12283588908878 36.0 36.0 36.0 36.0 36.0 8 35.07105656929096 36.0 36.0 36.0 36.0 36.0 9 35.174834518404296 36.0 36.0 36.0 36.0 36.0 10 35.04008395442474 36.0 36.0 36.0 36.0 36.0 11 35.175532425254865 36.0 36.0 36.0 36.0 36.0 12 35.08569262400411 36.0 36.0 36.0 36.0 36.0 13 35.12684028670151 36.0 36.0 36.0 36.0 36.0 14 35.068892886718636 36.0 36.0 36.0 36.0 36.0 15 35.04273622890431 36.0 36.0 36.0 36.0 36.0 16 35.05729432593735 36.0 36.0 36.0 36.0 36.0 17 35.01981067420543 36.0 36.0 36.0 36.0 36.0 18 35.01313001513464 36.0 36.0 36.0 36.0 36.0 19 35.01516805162912 36.0 36.0 36.0 36.0 36.0 20 35.006633256232334 36.0 36.0 36.0 36.0 36.0 21 35.00487935120935 36.0 36.0 36.0 36.0 36.0 22 34.986979354064935 36.0 36.0 36.0 36.0 36.0 23 34.93521574002684 36.0 36.0 36.0 36.0 36.0 24 34.91105142922414 36.0 36.0 36.0 32.0 36.0 25 34.88384162883006 36.0 36.0 36.0 32.0 36.0 26 34.823112881578574 36.0 36.0 36.0 32.0 36.0 27 34.82173305919643 36.0 36.0 36.0 32.0 36.0 28 34.79788486250321 36.0 36.0 36.0 32.0 36.0 29 34.771753619463716 36.0 36.0 36.0 32.0 36.0 30 34.75738513378452 36.0 36.0 36.0 32.0 36.0 31 34.743432422399266 36.0 36.0 36.0 32.0 36.0 32 34.71242639709872 36.0 36.0 36.0 32.0 36.0 33 34.69223535794854 36.0 36.0 36.0 32.0 36.0 34 34.682574031240186 36.0 36.0 36.0 32.0 36.0 35 34.64102030326394 36.0 36.0 36.0 32.0 36.0 36 34.62558325480453 36.0 36.0 36.0 32.0 36.0 37 34.61944715725749 36.0 36.0 36.0 32.0 36.0 38 34.580740740740744 36.0 36.0 36.0 32.0 36.0 39 34.586402524343924 36.0 36.0 36.0 32.0 36.0 40 34.56151917530484 36.0 36.0 36.0 32.0 36.0 41 34.54795025557554 36.0 36.0 36.0 32.0 36.0 42 34.47715497301465 36.0 36.0 36.0 32.0 36.0 43 34.4721017162112 36.0 36.0 36.0 32.0 36.0 44 34.42201090836403 36.0 36.0 36.0 32.0 36.0 45 34.387084439875494 36.0 36.0 36.0 32.0 36.0 46 34.37497187241212 36.0 36.0 36.0 32.0 36.0 47 34.34543819069648 36.0 36.0 36.0 32.0 36.0 48 34.30348467974528 36.0 36.0 36.0 32.0 36.0 49 34.293087181244466 36.0 36.0 36.0 32.0 36.0 50 33.69624089779834 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 16 1.0 17 2.0 18 1.0 19 15.0 20 42.0 21 148.0 22 427.0 23 1083.0 24 2844.0 25 6422.0 26 12935.0 27 23535.0 28 39002.0 29 59489.0 30 85674.0 31 121369.0 32 176324.0 33 284219.0 34 596023.0 35 2092345.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.363093436175234 18.184458566420187 12.185525520654245 26.266922476750338 2 16.133972455969413 20.554735679422848 36.66968980126126 26.641602063346475 3 17.811340000405494 24.837123527972203 28.688075885943775 28.663460585678525 4 12.645335389360064 16.33924441017733 35.44638624746566 35.56903395299694 5 14.702704246266313 36.640652217367716 32.876210057397415 15.780433478968561 6 34.04849891187423 35.21840901478143 17.05032106920457 13.68277100413976 7 30.512359151420416 30.368751354622166 20.857197766126323 18.2616917278311 8 28.55653461164928 32.35932846721165 19.237048241539807 19.84708867959927 9 27.73734216977016 14.33039661163312 18.354824744764503 39.57743647383222 10 16.298928969788072 26.5284011762885 30.860696395232022 26.311973458691405 11 36.9578228961421 21.028441703075472 22.690682201090837 19.323053199691596 12 25.3276510781588 23.249862360275692 28.32668360225432 23.095802959311186 13 29.423872484530456 19.48007370895813 25.323561822917455 25.77249198359396 14 24.20348080309707 19.304102095637987 25.015612984177416 31.476804117087532 15 25.38855738655267 26.926395058449597 22.04978389284169 25.635263662156042 16 26.065942940298285 25.523690730339965 23.22826393624446 25.18210239311729 17 24.425911647962533 25.843884748279507 24.77240926354265 24.95779434021531 18 25.18109491066689 24.74321745410268 25.69373193298596 24.381955702244472 19 25.951726749322795 24.683557316632296 25.040877832535386 24.323838101509523 20 26.40513689349416 23.84697032996248 24.577834268020947 25.170058508522413 21 27.148033924441016 23.86124675176333 24.16650960906936 24.82420971472629 22 26.397029721630638 23.795551778551836 24.569504388196787 25.23791411162074 23 24.80466173254663 23.74951240393001 25.20741751416527 26.23840834935809 24 25.210857926761708 24.56046516675024 24.816955673003445 25.411721233484602 25 25.385541053939765 24.071942914451636 24.93711862819233 25.60539740341627 26 25.174692173670678 24.728312940085917 25.220869335765656 24.87612555047775 27 25.630555196997097 24.456831528673696 24.464285102333854 25.448328171995353 28 25.121068313999146 24.220887775284417 25.21153757187137 25.446506338845065 29 25.059098211832893 24.47439858038642 25.109529447443858 25.35697376033683 30 25.00932387752223 24.639167367742296 25.170328537462 25.181180217273475 31 25.616781365106583 24.272870530030737 24.472862191095274 25.63748591376741 32 25.395654115773738 24.462418713140345 24.21597374604346 25.925953425042465 33 24.956143169029065 24.189694537136592 24.903397887047422 25.95076440678692 34 25.684647895368094 24.179764692443886 24.96010623108116 25.175481181106857 35 26.011779740274577 24.16523049025137 24.95885657987735 24.864133189596703 36 25.277708206546308 24.63417510874293 24.58576876274236 25.5023479219684 37 25.99830200204411 24.395113215570063 24.545351480722182 25.061233301663645 38 25.206853369925764 24.411510622894735 24.896369838661084 25.48526616851842 39 25.8246931468974 24.24991225833203 24.405891099810752 25.519503494959817 40 25.906381530231947 24.509846196637223 24.735101200550915 24.848671072579915 41 25.102983016405034 24.75290501346311 25.017312569482304 25.126799400649553 42 26.148481940922487 24.784855961437415 24.444549151303317 24.622112946336784 43 25.51317278163892 24.035950222768474 24.829475458915624 25.621401536676984 44 25.321936700369776 24.49977197786429 24.42992324349423 25.748368078271707 45 25.387645655361673 24.673564935055666 24.49254607214197 25.446243337440695 46 25.287219120375028 24.45857282538174 24.632966061425712 25.621241992817524 47 25.417589638311245 24.465114313316235 24.94115207993094 25.17614396844158 48 26.02424157620219 24.931899989576895 24.015351951191306 25.02850648302961 49 25.369336800037694 25.01230051814951 24.144110957384378 25.474251724428417 50 25.41941972584871 25.151362332382032 24.15871899006871 25.270498951700553 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 27.0 1 52.5 2 78.0 3 199.5 4 321.0 5 394.0 6 467.0 7 462.0 8 457.0 9 583.5 10 710.0 11 1107.5 12 1505.0 13 2782.5 14 4060.0 15 5353.5 16 6647.0 17 6694.5 18 6742.0 19 6646.0 20 6550.0 21 7248.0 22 7946.0 23 9438.5 24 10931.0 25 12855.5 26 14780.0 27 18900.0 28 23020.0 29 28409.0 30 33798.0 31 40081.5 32 46365.0 33 54946.5 34 63528.0 35 74697.0 36 85866.0 37 101701.0 38 117536.0 39 132059.5 40 146583.0 41 161971.5 42 177360.0 43 184296.5 44 191233.0 45 210360.0 46 229487.0 47 246510.0 48 263533.0 49 273737.5 50 283942.0 51 277512.0 52 271082.0 53 269618.5 54 268155.0 55 267846.0 56 267537.0 57 258866.0 58 250195.0 59 229906.5 60 209618.0 61 183404.0 62 157190.0 63 135424.5 64 113659.0 65 96026.0 66 78393.0 67 66511.0 68 54629.0 69 48583.5 70 42538.0 71 32973.5 72 23409.0 73 19703.5 74 15998.0 75 12460.0 76 8922.0 77 7704.0 78 6486.0 79 5401.0 80 4316.0 81 3455.5 82 2595.0 83 2210.5 84 1826.0 85 1335.0 86 844.0 87 611.0 88 378.0 89 301.0 90 224.0 91 181.0 92 138.0 93 108.0 94 78.0 95 91.0 96 104.0 97 85.0 98 66.0 99 57.0 100 48.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009823238813215684 2 4.5689482852165965E-4 3 3.712270481738485E-4 4 0.0 5 0.0 6 1.998914874782261E-4 7 2.8555926782603728E-5 8 2.8555926782603728E-5 9 0.001028013364173734 10 0.0010851252177389416 11 0.0 12 1.1422370713041491E-4 13 5.425626088694708E-4 14 1.998914874782261E-4 15 0.004711727919129616 16 6.853422427824896E-4 17 0.0 18 1.998914874782261E-4 19 5.7111853565207456E-5 20 4.854507553042634E-4 21 0.0 22 1.713355606956224E-4 23 7.42454096347697E-4 24 4.5689482852165965E-4 25 0.0019418030212170537 26 0.00482595162626003 27 0.0063965275993032355 28 0.004511836431651389 29 0.0029127045318255804 30 0.0039407178959993145 31 0.007253205402781348 32 0.002969816385390788 33 0.004711727919129616 34 0.002855592678260373 35 0.003569490847825466 36 0.008366886547302893 37 0.003683714554955881 38 0.007567320597389989 39 0.004083497529912333 40 0.0025985893372169394 41 0.003112596019303807 42 0.0017133556069562237 43 0.0016562437533910162 44 0.0013421285587823751 45 0.001570575973043205 46 0.001256460778434564 47 0.0021988063622604874 48 0.0018561352408692426 49 4.2833890173905593E-4 50 0.0010851252177389416 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3501900.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.20619859316336 #Duplication Level Percentage of deduplicated Percentage of total 1 73.57932929037673 33.99821101542909 2 14.025128746828367 12.960957683412715 3 4.8564743980669585 6.73197661499086 4 2.19808215947054 4.062600831383406 5 1.236704707964998 2.8571711668665394 6 0.8175939678696428 2.2666745548774276 7 0.559761991167851 1.810513161016439 8 0.3990727122157552 1.4751706395002808 9 0.29979277691421274 1.246705612820463 >10 1.8302016113193955 15.511784005129165 >50 0.11454195665708274 3.610679551861696 >100 0.0683573212794029 6.346931083955543 >500 0.00959828091855502 3.0771705473028947 >1k 0.00536007895071081 4.043453531453429 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 2.8555926782603728E-5 6 0.0 0.0 0.0 0.0 1.4277963391301864E-4 7 0.0 0.0 0.0 0.0 1.4277963391301864E-4 8 0.0 0.0 0.0 2.8555926782603728E-5 1.4277963391301864E-4 9 0.0 0.0 0.0 2.8555926782603728E-5 1.4277963391301864E-4 10 0.0 0.0 0.0 2.8555926782603728E-5 1.713355606956224E-4 11 0.0 0.0 0.0 2.8555926782603728E-5 1.713355606956224E-4 12 0.0 0.0 0.0 2.8555926782603728E-5 3.14115194608641E-4 13 0.0 0.0 0.0 2.8555926782603728E-5 3.712270481738485E-4 14 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 3.997829749564522E-4 15 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 5.140066820868671E-4 16 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 5.425626088694708E-4 17 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 5.425626088694708E-4 18 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 5.996744624346784E-4 19 2.8555926782603728E-5 0.0 0.0 2.8555926782603728E-5 5.996744624346784E-4 20 2.8555926782603728E-5 0.0 0.0 5.7111853565207456E-5 7.710100231303007E-4 21 2.8555926782603728E-5 0.0 0.0 5.7111853565207456E-5 9.137896570433193E-4 22 2.8555926782603728E-5 0.0 0.0 5.7111853565207456E-5 9.423455838259231E-4 23 5.7111853565207456E-5 0.0 0.0 1.4277963391301864E-4 9.423455838259231E-4 24 5.7111853565207456E-5 0.0 0.0 3.426711213912448E-4 9.423455838259231E-4 25 5.7111853565207456E-5 2.8555926782603728E-5 0.0 4.5689482852165965E-4 9.423455838259231E-4 26 5.7111853565207456E-5 2.8555926782603728E-5 0.0 5.140066820868671E-4 9.709015106085268E-4 27 5.7111853565207456E-5 2.8555926782603728E-5 0.0 6.853422427824896E-4 9.994574373911305E-4 28 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.0010851252177389416 9.994574373911305E-4 29 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.0018561352408692424 9.994574373911305E-4 30 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.003997829749564522 9.994574373911305E-4 31 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.009566235472172249 0.0010280133641737343 32 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.01716211199634484 0.001056569290956338 33 5.7111853565207456E-5 2.8555926782603728E-5 0.0 0.024500985179474 0.001056569290956338 34 5.7111853565207456E-5 5.7111853565207456E-5 0.0 0.033210542848168136 0.0011422370713041492 35 5.7111853565207456E-5 5.7111853565207456E-5 0.0 0.0428624461006882 0.0011422370713041492 36 5.7111853565207456E-5 5.7111853565207456E-5 0.0 0.058082755075815985 0.0011422370713041492 37 5.7111853565207456E-5 8.56677803478112E-5 0.0 0.0812416116965076 0.0011422370713041492 38 5.7111853565207456E-5 8.56677803478112E-5 0.0 0.11448071047145836 0.001170792998086753 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 5585 0.0 23.596195 1 GGTATCA 2635 0.0 20.038671 1 AACGCAG 7855 0.0 16.74726 6 AATAGCG 835 0.0 16.0706 5 TCAACGC 8265 0.0 15.836632 4 TAGCGTA 850 0.0 15.787001 7 TATCAAC 8475 0.0 15.652321 2 ATCAACG 8350 0.0 15.6493 3 CAACGCA 8425 0.0 15.561989 5 GTATAGG 460 0.0 15.304898 1 CGTATAT 850 0.0 15.270048 10 ATAGCGT 850 0.0 15.269394 6 GCATTCG 1285 0.0 15.065829 22 TAGGACG 310 0.0 14.90206 4 GTACATG 12815 0.0 14.627136 1 AGCGTAT 910 0.0 14.504359 8 TAGACAG 610 0.0 14.425101 5 TACATGG 13045 0.0 14.351146 2 ACCGTCG 1050 0.0 14.246506 8 ACATGGG 12775 0.0 14.172088 3 >>END_MODULE