##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063873_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 3055577 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.198894349577838 32.0 32.0 32.0 32.0 32.0 2 31.062294617350503 32.0 32.0 32.0 32.0 32.0 3 31.317003302485915 32.0 32.0 32.0 32.0 32.0 4 31.46564789563477 32.0 32.0 32.0 32.0 32.0 5 31.353106467289155 32.0 32.0 32.0 32.0 32.0 6 34.99731474611833 36.0 36.0 36.0 36.0 36.0 7 35.02918401336311 36.0 36.0 36.0 36.0 36.0 8 34.95565289305424 36.0 36.0 36.0 36.0 36.0 9 35.131823547565645 36.0 36.0 36.0 36.0 36.0 10 34.91327006323192 36.0 36.0 36.0 32.0 36.0 11 35.139672474298635 36.0 36.0 36.0 36.0 36.0 12 35.022330970549916 36.0 36.0 36.0 36.0 36.0 13 35.08732458714017 36.0 36.0 36.0 36.0 36.0 14 35.023520598564524 36.0 36.0 36.0 36.0 36.0 15 34.968092769385294 36.0 36.0 36.0 36.0 36.0 16 34.99685264027056 36.0 36.0 36.0 36.0 36.0 17 34.95859570876466 36.0 36.0 36.0 36.0 36.0 18 34.96571645878994 36.0 36.0 36.0 36.0 36.0 19 34.96774717181076 36.0 36.0 36.0 36.0 36.0 20 34.95712233728687 36.0 36.0 36.0 36.0 36.0 21 34.96975432136058 36.0 36.0 36.0 36.0 36.0 22 34.948930758413226 36.0 36.0 36.0 36.0 36.0 23 34.89556506021612 36.0 36.0 36.0 32.0 36.0 24 34.87920513866939 36.0 36.0 36.0 32.0 36.0 25 34.850586321339634 36.0 36.0 36.0 32.0 36.0 26 34.78983282044602 36.0 36.0 36.0 32.0 36.0 27 34.77848766370476 36.0 36.0 36.0 32.0 36.0 28 34.754466014111244 36.0 36.0 36.0 32.0 36.0 29 34.74079003736446 36.0 36.0 36.0 32.0 36.0 30 34.72228485814627 36.0 36.0 36.0 32.0 36.0 31 34.71777932613055 36.0 36.0 36.0 32.0 36.0 32 34.67566453079075 36.0 36.0 36.0 32.0 36.0 33 34.65088950466639 36.0 36.0 36.0 32.0 36.0 34 34.64542376120779 36.0 36.0 36.0 32.0 36.0 35 34.62212439745423 36.0 36.0 36.0 32.0 36.0 36 34.58207827850517 36.0 36.0 36.0 32.0 36.0 37 34.584008846774275 36.0 36.0 36.0 32.0 36.0 38 34.53760746333671 36.0 36.0 36.0 32.0 36.0 39 34.54233357562254 36.0 36.0 36.0 32.0 36.0 40 34.528887015447495 36.0 36.0 36.0 32.0 36.0 41 34.51059292565692 36.0 36.0 36.0 32.0 36.0 42 34.45300216620298 36.0 36.0 36.0 32.0 36.0 43 34.44455400731188 36.0 36.0 36.0 32.0 36.0 44 34.39003304449536 36.0 36.0 36.0 32.0 36.0 45 34.3541340964407 36.0 36.0 36.0 32.0 36.0 46 34.334126418676405 36.0 36.0 36.0 32.0 36.0 47 34.31408470478735 36.0 36.0 36.0 32.0 36.0 48 34.26778444791278 36.0 36.0 36.0 32.0 36.0 49 34.25147623509406 36.0 36.0 36.0 32.0 36.0 50 33.58462116974961 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 4.0 18 1.0 19 14.0 20 17.0 21 71.0 22 206.0 23 579.0 24 1506.0 25 3712.0 26 7902.0 27 15532.0 28 27543.0 29 45770.0 30 72462.0 31 111742.0 32 176990.0 33 310726.0 34 662787.0 35 1618013.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.5031061470652 19.434979395449293 13.226547288679393 25.835367168806105 2 15.269495960800588 20.92542241084765 37.97888174852629 25.826199879825474 3 17.475794244945714 25.06114233818512 29.901573353624112 27.561490063245053 4 11.859429495640267 17.13869426298208 37.384755808804684 33.61712043257297 5 13.808324908847002 37.190651716517046 34.10982606558434 14.891197309051613 6 32.79492966301607 37.020155937865724 17.37849099482389 12.806423404294312 7 29.35794408581036 31.33616422440948 21.342856909092397 17.96303478068776 8 27.383076911496584 33.64130571738169 19.701909001147737 19.273708369973985 9 27.007201326897828 14.700439986542513 19.06116349669519 39.23119518986447 10 15.161752832625933 27.520285172228824 32.678460915636656 24.63950107950858 11 35.97117663865122 21.67286244136541 23.68547740737674 18.67048351260662 12 24.23583122652856 24.18055521464863 29.810952112122923 21.772661446699885 13 28.535844692146146 20.45100124134487 26.006354978814013 25.006799087694976 14 22.93063024616045 20.430014975939006 26.442906850706642 30.196447927193898 15 24.265842956324175 28.301918903412698 23.22324455079018 24.20899358947295 16 24.81263614561297 26.592020034350583 24.849748916071466 23.745594903964978 17 22.960188193649905 26.772300868968728 26.251678897857555 24.015832039523808 18 23.456580427409758 26.24398270829427 27.212312993095555 23.087123871200422 19 24.641892513263453 25.834335053575806 26.37151673808253 23.152255695078214 20 25.069365399053133 25.556674100115266 25.866044761709645 23.507915739121955 21 25.942334295617485 25.204274020913235 25.624980159230155 23.22841152423912 22 24.974382856755742 25.512907407486196 25.919574442878268 23.59313529287979 23 23.859373639773814 25.496194148499228 26.287178970256825 24.357253241470133 24 24.12749446256801 25.898883611819475 26.073090175050922 23.900531750561598 25 24.1980357574744 25.525792751435183 26.33187248427359 23.94429900681682 26 23.702456629095515 26.24192139480737 26.53932468800801 23.51629728808911 27 24.363130078693153 25.94124785789936 25.654968953450467 24.04065310995702 28 23.67385197648658 26.03717230244871 26.189817725524282 24.099157995540423 29 23.849783604188104 25.72982858519292 26.110223098452895 24.31016471216608 30 23.86325403963245 25.93474797380179 26.291713631525827 23.910284355039934 31 24.352097413102683 25.61319308140222 25.876206363965743 24.15850314152936 32 24.1000443792211 25.97739016142778 25.40402764341099 24.518537815940125 33 23.74051038081536 25.82416827145253 25.965064324530246 24.470257023201867 34 24.32164770845415 25.738277174347047 26.095535514411427 23.844539602787375 35 24.622270572287167 25.69980500698087 26.049208409507596 23.62871601122437 36 23.849031531678964 26.024566823986856 25.765381266896647 24.361020377437537 37 24.653685760124 25.81288852553231 25.473659957152144 24.05976575719155 38 24.018243319537927 25.83835319184451 25.859234494078446 24.284168994539115 39 24.499672552217366 25.653872802327903 25.39823116013391 24.448223485320817 40 24.81656102152438 25.821891715692818 25.81547707880054 23.54607018398226 41 23.95466642927929 25.982790287888925 26.26749150052823 23.795051782303556 42 24.79721107753614 26.162937401428298 25.604472172794324 23.43537934824123 43 24.120857434412446 25.835582258289385 25.807272967671118 24.23628733962705 44 24.034710778963422 25.947927286056288 25.500607913180506 24.516754021799784 45 24.129981649718758 26.17597091707879 25.64074619895213 24.053301234250323 46 24.116091739978643 25.801484446821178 25.471952830735162 24.610470982465017 47 24.279590000644735 25.872642829347704 25.827216801608373 24.020550368399192 48 24.673271331823717 26.237523797118456 25.03363587896909 24.055568992088734 49 24.225502289105012 26.123909815578873 25.395009296165256 24.25557859915086 50 24.24683353117116 26.26926300583237 25.31934690281532 24.164556560181154 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 6.0 1 11.0 2 16.0 3 75.0 4 134.0 5 170.0 6 206.0 7 209.0 8 212.0 9 297.0 10 382.0 11 617.0 12 852.0 13 1662.5 14 2473.0 15 3475.0 16 4477.0 17 5034.5 18 5592.0 19 6222.5 20 6853.0 21 8446.0 22 10039.0 23 12342.0 24 14645.0 25 20231.5 26 25818.0 27 33852.0 28 41886.0 29 48685.0 30 55484.0 31 62021.5 32 68559.0 33 79183.5 34 89808.0 35 103099.0 36 116390.0 37 130449.0 38 144508.0 39 153547.5 40 162587.0 41 173672.0 42 184757.0 43 187590.0 44 190423.0 45 200517.0 46 210611.0 47 219943.0 48 229275.0 49 229385.5 50 229496.0 51 221607.0 52 213718.0 53 208063.0 54 202408.0 55 197329.0 56 192250.0 57 183891.0 58 175532.0 59 158836.0 60 142140.0 61 124365.5 62 106591.0 63 91014.0 64 75437.0 65 63688.5 66 51940.0 67 43177.5 68 34415.0 69 30515.0 70 26615.0 71 20574.5 72 14534.0 73 12158.5 74 9783.0 75 7525.5 76 5268.0 77 4567.0 78 3866.0 79 3111.0 80 2356.0 81 1846.5 82 1337.0 83 1147.0 84 957.0 85 677.5 86 398.0 87 298.0 88 198.0 89 154.0 90 110.0 91 88.5 92 67.0 93 59.0 94 51.0 95 53.0 96 55.0 97 43.5 98 32.0 99 31.0 100 30.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.006021775919899907 2 6.872679039016199E-4 3 6.545408608586856E-5 4 0.0 5 0.0 6 3.272704304293428E-5 7 6.545408608586856E-5 8 0.0 9 9.490842482450942E-4 10 6.545408608586856E-4 11 0.0 12 6.545408608586856E-5 13 6.545408608586856E-4 14 2.945433873864085E-4 15 0.004385423767753194 16 8.18176076073357E-4 17 3.272704304293428E-5 18 2.6181634434347426E-4 19 0.0 20 6.218138178157513E-4 21 0.0 22 1.9636225825760565E-4 23 6.218138178157513E-4 24 2.945433873864085E-4 25 0.0015708980660608452 26 0.004254515595581457 27 0.005399962102084157 28 0.004254515595581457 29 0.0021272577977907285 30 0.0033054313473363625 31 0.007134495383359673 32 0.003043615002992888 33 0.004352696724710259 34 0.002781798658649414 35 0.002716344572563545 36 0.007756309201175425 37 0.0037636099499374423 38 0.006938133125102068 39 0.004189061509495588 40 0.0021272577977907285 41 0.003043615002992888 42 0.0019636225825760568 43 0.001407262850846174 44 0.0013745358078032397 45 0.0012436276356315027 46 9.163572052021599E-4 47 0.0019636225825760568 48 0.0019636225825760568 49 5.236326886869485E-4 50 0.0014399898938891084 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 3055577.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.174171542045805 #Duplication Level Percentage of deduplicated Percentage of total 1 63.868292491182046 25.65855738638303 2 15.82892697490884 12.718280552330077 3 7.422144152098976 8.945354771286492 4 4.009496581664846 6.44312813876199 5 2.3979785112780485 4.816840003311197 6 1.569688159315398 3.783655282791295 7 1.0585710169385443 2.976904953674887 8 0.7430415170314181 2.388086189446571 9 0.5374646753310263 1.943297825808474 >10 2.363267019995457 15.80559129504401 >50 0.10652199854473761 2.9683448013267726 >100 0.08095178857896372 6.633437168999966 >500 0.009730290196047063 2.6443007697202487 >1k 0.003924822935908839 2.274220861115067 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.272704304293428E-5 2 0.0 0.0 0.0 0.0 3.272704304293428E-5 3 0.0 0.0 0.0 0.0 3.272704304293428E-5 4 0.0 0.0 0.0 0.0 3.272704304293428E-5 5 0.0 0.0 0.0 0.0 3.272704304293428E-5 6 0.0 0.0 0.0 0.0 1.3090817217173713E-4 7 0.0 0.0 0.0 0.0 1.3090817217173713E-4 8 0.0 0.0 0.0 0.0 1.3090817217173713E-4 9 0.0 0.0 0.0 0.0 1.636352152146714E-4 10 0.0 0.0 0.0 0.0 1.636352152146714E-4 11 0.0 0.0 0.0 0.0 1.636352152146714E-4 12 0.0 0.0 0.0 0.0 1.636352152146714E-4 13 0.0 0.0 0.0 0.0 1.636352152146714E-4 14 0.0 0.0 0.0 0.0 1.636352152146714E-4 15 0.0 0.0 0.0 0.0 2.2908930130053997E-4 16 0.0 0.0 0.0 0.0 2.2908930130053997E-4 17 0.0 0.0 0.0 0.0 2.945433873864085E-4 18 0.0 0.0 0.0 0.0 2.945433873864085E-4 19 0.0 0.0 0.0 0.0 2.945433873864085E-4 20 0.0 0.0 0.0 0.0 2.945433873864085E-4 21 0.0 0.0 0.0 3.272704304293428E-5 2.945433873864085E-4 22 0.0 0.0 0.0 3.272704304293428E-5 2.945433873864085E-4 23 0.0 0.0 0.0 3.272704304293428E-5 3.599974734722771E-4 24 0.0 0.0 0.0 3.272704304293428E-5 3.599974734722771E-4 25 0.0 0.0 0.0 3.272704304293428E-5 3.9272451651521136E-4 26 0.0 0.0 0.0 3.272704304293428E-5 3.9272451651521136E-4 27 0.0 0.0 0.0 3.272704304293428E-5 3.9272451651521136E-4 28 0.0 0.0 0.0 9.818112912880284E-5 3.9272451651521136E-4 29 0.0 0.0 0.0 1.9636225825760568E-4 3.9272451651521136E-4 30 0.0 0.0 0.0 3.9272451651521136E-4 3.9272451651521136E-4 31 0.0 0.0 0.0 0.0011454465065026999 3.9272451651521136E-4 32 0.0 0.0 0.0 0.002094530754747794 3.9272451651521136E-4 33 0.0 0.0 0.0 0.0030763420460358224 3.9272451651521136E-4 34 0.0 0.0 0.0 0.004647240112096667 4.909056456440142E-4 35 0.0 0.0 0.0 0.006545408608586856 4.909056456440142E-4 36 0.0 0.0 0.0 0.010898105333297116 4.909056456440142E-4 37 0.0 0.0 0.0 0.01688715421015409 4.909056456440142E-4 38 0.0 0.0 0.0 0.02791616771562294 4.909056456440142E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 4685 0.0 27.001007 1 GGTATCA 1855 0.0 22.65224 1 TACGCGG 55 0.00448436 20.00061 35 CGTCTTA 465 0.0 18.92438 15 TCAACGC 6835 0.0 18.377989 4 AACGCAG 6865 0.0 18.169498 6 TATCAAC 7060 0.0 17.979542 2 GTAAACG 540 0.0 17.92706 27 CAACGCA 6980 0.0 17.901659 5 ATCAACG 7015 0.0 17.875061 3 CGCGGGA 560 0.0 17.285395 44 AATACCG 115 4.2792926E-6 17.216509 5 TAAACGC 570 0.0 16.98353 28 CGCAATA 390 0.0 16.923594 36 ATACCGT 835 0.0 16.86141 6 TAGGACG 775 0.0 16.179813 4 ACCGTCG 825 0.0 15.99944 8 CGTCGTA 815 0.0 15.926344 10 TACCGTC 830 0.0 15.903058 7 CCGTCGT 850 0.0 15.788199 9 >>END_MODULE