##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063872_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2320939 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.324553553540184 32.0 32.0 32.0 32.0 32.0 2 31.387270410812175 32.0 32.0 32.0 32.0 32.0 3 31.473837528689895 32.0 32.0 32.0 32.0 32.0 4 31.561508940993278 32.0 32.0 32.0 32.0 32.0 5 31.509891901510553 32.0 32.0 32.0 32.0 32.0 6 35.09715895161398 36.0 36.0 36.0 36.0 36.0 7 35.11576435227294 36.0 36.0 36.0 36.0 36.0 8 35.06424813405264 36.0 36.0 36.0 36.0 36.0 9 35.17023325473009 36.0 36.0 36.0 36.0 36.0 10 35.02995985676487 36.0 36.0 36.0 36.0 36.0 11 35.1731902475679 36.0 36.0 36.0 36.0 36.0 12 35.085621810827426 36.0 36.0 36.0 36.0 36.0 13 35.12035689003459 36.0 36.0 36.0 36.0 36.0 14 35.06769630739972 36.0 36.0 36.0 36.0 36.0 15 35.03864901231786 36.0 36.0 36.0 36.0 36.0 16 35.053213806997945 36.0 36.0 36.0 36.0 36.0 17 35.02343275717285 36.0 36.0 36.0 36.0 36.0 18 35.01764673694569 36.0 36.0 36.0 36.0 36.0 19 35.01315803646714 36.0 36.0 36.0 36.0 36.0 20 34.99921023344431 36.0 36.0 36.0 36.0 36.0 21 34.99764448785599 36.0 36.0 36.0 36.0 36.0 22 34.98214515762801 36.0 36.0 36.0 36.0 36.0 23 34.930909429330114 36.0 36.0 36.0 36.0 36.0 24 34.908186298735124 36.0 36.0 36.0 32.0 36.0 25 34.876559444259414 36.0 36.0 36.0 32.0 36.0 26 34.823274545345654 36.0 36.0 36.0 32.0 36.0 27 34.808260794445694 36.0 36.0 36.0 32.0 36.0 28 34.780636630260425 36.0 36.0 36.0 32.0 36.0 29 34.757277119303865 36.0 36.0 36.0 32.0 36.0 30 34.73280168069906 36.0 36.0 36.0 32.0 36.0 31 34.72230894478485 36.0 36.0 36.0 32.0 36.0 32 34.682563393523054 36.0 36.0 36.0 32.0 36.0 33 34.65953176709944 36.0 36.0 36.0 32.0 36.0 34 34.65435282874733 36.0 36.0 36.0 32.0 36.0 35 34.61863625024182 36.0 36.0 36.0 32.0 36.0 36 34.5870938443449 36.0 36.0 36.0 32.0 36.0 37 34.56518762449164 36.0 36.0 36.0 32.0 36.0 38 34.52828574986245 36.0 36.0 36.0 32.0 36.0 39 34.499552982650556 36.0 36.0 36.0 32.0 36.0 40 34.49288369922691 36.0 36.0 36.0 32.0 36.0 41 34.47137904098298 36.0 36.0 36.0 32.0 36.0 42 34.421836162001675 36.0 36.0 36.0 32.0 36.0 43 34.41839272811565 36.0 36.0 36.0 32.0 36.0 44 34.343222721493326 36.0 36.0 36.0 32.0 36.0 45 34.31062298492119 36.0 36.0 36.0 32.0 36.0 46 34.27219931243346 36.0 36.0 36.0 32.0 36.0 47 34.25688008172554 36.0 36.0 36.0 32.0 36.0 48 34.20064465287541 36.0 36.0 36.0 32.0 36.0 49 34.17939463294813 36.0 36.0 36.0 32.0 36.0 50 33.60222952865198 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 7.0 19 5.0 20 30.0 21 61.0 22 237.0 23 720.0 24 1824.0 25 4276.0 26 8784.0 27 15723.0 28 26191.0 29 40436.0 30 58510.0 31 83128.0 32 121043.0 33 195668.0 34 406123.0 35 1358172.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.06445483008334 18.2560543554043 12.259267143126763 26.42022367138559 2 15.338771672894778 20.524712302702927 38.365542418574634 25.770973605827667 3 17.93783259878488 25.119962842433218 28.847094286033126 28.095110272748773 4 12.124833957290562 16.680490094741828 36.37170128124867 34.82297466671894 5 13.921434384962295 37.50344149501559 33.66361632080809 14.911507799214025 6 33.623862796674615 35.96179987806638 17.315176857602648 13.099160467656354 7 29.859897222632735 30.593393449806307 21.190216545975574 18.356492781585384 8 27.649110984821228 34.16608536458735 19.200030677238825 18.984772973352595 9 27.62687173592048 14.197725285847302 18.477991578292453 39.69741139993977 10 15.755877631178697 27.32552377981471 31.9868689889087 24.931729600097892 11 36.56214144361399 20.779520702612174 23.602516050615723 19.055821803158118 12 25.33622240011995 23.30018863095633 29.51346311441859 21.850125854505126 13 29.91959236924604 20.09367820747254 25.21353564356265 24.773193779718767 14 23.3858639546527 20.137169033819173 25.492388402589995 30.984578608938136 15 24.656018496775086 28.585161301720024 22.169329427271283 24.589490774233607 16 24.936350698709695 25.768821946115356 24.96194398689141 24.33288336828354 17 23.595363773024623 26.452138552542742 25.684302775729996 24.268194898702635 18 24.129067171751338 25.13392255090737 27.313004996701757 23.424005280639538 19 25.78128938330564 24.628910970947533 25.5354836986237 24.054315947123126 20 26.001628664495115 24.67211278286197 25.331161780673185 23.995096771969738 21 26.261612218158252 24.25867289058437 24.638303721037047 24.84141117022033 22 25.779082232340745 25.121287273755073 24.937051258630138 24.162579235274045 23 24.117999860400065 25.002951418361185 25.753818101285788 25.125230619952966 24 25.027348915285362 24.955179662661525 25.750635627999603 24.266835794053513 25 24.761784118998715 24.85213703827698 25.884797227281325 24.501281615442984 26 24.051790293176424 25.750370235360677 26.16767945481362 24.03016001664928 27 24.70072845507717 25.494376512946822 25.327796167014675 24.477098864961334 28 24.12971615596341 25.312169841075605 25.656267612066603 24.901846390894377 29 24.49478345769676 24.996660758003625 25.33429043908232 25.1742653452173 30 24.227539497161185 25.127334099427667 25.856502516520795 24.788623886890353 31 25.158482019745186 24.756158306215873 25.14960564778556 24.935754026253377 32 24.561510849178344 25.489827723863538 25.09506145763631 24.85359996932181 33 23.994846693438582 25.306871649919856 25.82905327381465 24.869228382826908 34 24.725480928114674 25.240243235638943 25.96863168534998 24.065644150896407 35 24.969526658195747 25.235201632483527 25.796066235192583 23.999205474128143 36 24.174983227556705 25.503377972234226 25.681680786255946 24.639958013953123 37 24.797747735326155 25.41682752630055 25.032703338067204 24.752721400306093 38 24.593214803094508 25.75908388552361 25.145534346967676 24.50216696441421 39 25.250749944632066 24.840424019255114 25.11105902264613 24.797767013466686 40 25.663517012870063 25.02600295576266 25.514091576938156 23.79638845442912 41 24.805029506252843 25.016373212734567 25.94835371654694 24.23024356446565 42 25.263238625738833 25.913633429818976 25.356306050502862 23.46682189393933 43 24.374168430341175 25.380195371474663 25.71252162942843 24.53311456875573 44 24.141643891923845 25.562288041935112 25.314239747272527 24.98182831886852 45 24.24825919799665 25.722248098054518 25.29832010075345 24.731172603195382 46 24.425636752354023 25.081110146933238 25.288312641808115 25.204940458904623 47 25.16733889470802 24.995680534484848 25.39660449077918 24.440376080027953 48 24.934507939188897 25.671121275785346 24.762375845149194 24.631994939876563 49 24.74260384603453 25.505442631765806 24.987720471396024 24.76423305080364 50 24.442696085063336 26.243544546827835 24.67613940418095 24.63761996392788 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 21.0 1 29.5 2 38.0 3 117.5 4 197.0 5 225.0 6 253.0 7 270.5 8 288.0 9 367.5 10 447.0 11 689.5 12 932.0 13 1833.0 14 2734.0 15 3718.5 16 4703.0 17 5097.5 18 5492.0 19 5570.5 20 5649.0 21 6327.0 22 7005.0 23 7947.5 24 8890.0 25 10720.0 26 12550.0 27 16956.0 28 21362.0 29 27078.0 30 32794.0 31 39626.5 32 46459.0 33 56100.0 34 65741.0 35 77619.5 36 89498.0 37 97387.5 38 105277.0 39 108383.5 40 111490.0 41 116744.0 42 121998.0 43 123643.5 44 125289.0 45 136125.0 46 146961.0 47 155195.5 48 163430.0 49 168701.0 50 173972.0 51 171267.0 52 168562.0 53 166102.5 54 163643.0 55 163112.0 56 162581.0 57 157376.0 58 152171.0 59 138085.0 60 123999.0 61 108482.5 62 92966.0 63 79652.5 64 66339.0 65 55898.0 66 45457.0 67 38395.0 68 31333.0 69 27728.5 70 24124.0 71 18632.5 72 13141.0 73 11095.0 74 9049.0 75 6973.5 76 4898.0 77 4203.5 78 3509.0 79 2955.0 80 2401.0 81 1901.5 82 1402.0 83 1166.5 84 931.0 85 683.0 86 435.0 87 312.0 88 189.0 89 152.0 90 115.0 91 88.5 92 62.0 93 59.0 94 56.0 95 54.0 96 52.0 97 42.5 98 33.0 99 27.0 100 21.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.009177320041586617 2 4.308600958491369E-4 3 5.170321150189644E-4 4 0.0 5 0.0 6 1.7234403833965478E-4 7 0.0 8 0.0 9 0.0013787523067172382 10 9.048062012831875E-4 11 0.0 12 2.1543004792456844E-4 13 6.462901437737054E-4 14 3.0160206709439584E-4 15 0.004394772977661197 16 7.755481725284465E-4 17 0.0 18 3.4468807667930955E-4 19 0.0 20 8.186341821133602E-4 21 0.0 22 1.292580287547411E-4 23 9.048062012831875E-4 24 2.585160575094822E-4 25 0.0017234403833965475 26 0.005084149131019815 27 0.0059027833131331765 28 0.003748482833887491 29 0.0022835585080004258 30 0.003274536728453441 31 0.0073677076390202415 32 0.003102192690113786 33 0.004265514948906456 34 0.002671332594264649 35 0.002498988555924994 36 0.0072384496102655 37 0.003231450718868527 38 0.007798567734869378 39 0.004351686968076283 40 0.002111214469660771 41 0.003231450718868527 42 0.0017665263929814612 43 0.0011633222587926696 44 8.617201916982737E-4 45 0.0011202362492077561 46 9.048062012831875E-4 47 0.002154300479245685 48 0.0020250424504909435 49 1.292580287547411E-4 50 0.001421838316302152 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2320939.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.690967753670385 #Duplication Level Percentage of deduplicated Percentage of total 1 74.8654466941142 40.19598284317815 2 14.292579225147668 15.347648205883655 3 4.8224761696012575 7.76770237544715 4 2.0803273166531473 4.467791475020151 5 1.0884527529561536 2.92200408301813 6 0.6617123553735988 2.1316786040741507 7 0.4444861821139225 1.6705425289581473 8 0.29609504907945566 1.2718103785717203 9 0.2212434033271891 1.069089519037716 >10 1.0853294907623041 10.356382046651984 >50 0.07707512676014865 2.8932117795970425 >100 0.055977973161367454 6.086277688893742 >500 0.0067803111904552425 2.432360413682576 >1k 0.0020179497590636923 1.3875180579857516 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 8.617201916982739E-5 2 0.0 0.0 0.0 0.0 1.292580287547411E-4 3 0.0 0.0 0.0 0.0 1.292580287547411E-4 4 0.0 0.0 0.0 0.0 1.292580287547411E-4 5 0.0 0.0 0.0 0.0 1.292580287547411E-4 6 0.0 0.0 0.0 0.0 1.292580287547411E-4 7 0.0 0.0 0.0 0.0 1.292580287547411E-4 8 0.0 0.0 0.0 0.0 1.292580287547411E-4 9 0.0 0.0 0.0 0.0 1.292580287547411E-4 10 0.0 0.0 0.0 0.0 1.292580287547411E-4 11 0.0 0.0 0.0 0.0 1.292580287547411E-4 12 0.0 0.0 0.0 0.0 2.585160575094822E-4 13 0.0 0.0 0.0 0.0 3.0160206709439584E-4 14 0.0 0.0 0.0 0.0 3.0160206709439584E-4 15 0.0 0.0 0.0 0.0 3.4468807667930955E-4 16 0.0 0.0 0.0 0.0 3.4468807667930955E-4 17 0.0 0.0 0.0 0.0 4.3086009584913693E-4 18 0.0 0.0 0.0 4.3086009584913694E-5 4.3086009584913693E-4 19 0.0 0.0 0.0 1.292580287547411E-4 4.3086009584913693E-4 20 0.0 0.0 0.0 2.1543004792456846E-4 6.032041341887917E-4 21 0.0 0.0 0.0 2.585160575094822E-4 6.893761533586191E-4 22 0.0 0.0 0.0 3.4468807667930955E-4 6.893761533586191E-4 23 0.0 0.0 0.0 7.755481725284464E-4 6.893761533586191E-4 24 0.0 0.0 0.0 0.0011633222587926696 6.893761533586191E-4 25 0.0 0.0 0.0 0.001421838316302152 6.893761533586191E-4 26 0.0 0.0 0.0 0.0018957844217362024 8.617201916982739E-4 27 0.0 0.0 0.0 0.002369730527170253 8.617201916982739E-4 28 0.0 0.0 0.0 0.0031452786996986996 8.617201916982739E-4 29 0.0 0.0 0.0 0.005170321150189643 8.617201916982739E-4 30 0.0 0.0 0.0 0.008617201916982738 8.617201916982739E-4 31 0.0 0.0 0.0 0.01770834993939953 9.478922108681012E-4 32 0.0 0.0 0.0 0.02843676632604304 9.90978220453015E-4 33 0.0 0.0 0.0 0.039122096703101635 9.90978220453015E-4 34 0.0 0.0 0.0 0.05153086746355678 0.0010771502396228422 35 0.0 0.0 0.0 0.06665405682786148 0.0010771502396228422 36 0.0 0.0 0.0 0.08694756734235583 0.0010771502396228422 37 0.0 0.0 0.0 0.1192620745310411 0.0010771502396228422 38 0.0 0.0 0.0 0.16480398666229487 0.0010771502396228422 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGATTAA 75 2.0665466E-6 23.465473 41 GTATCAA 4230 0.0 21.687307 1 TAGGACG 1700 0.0 20.057802 4 TTAGGAC 1180 0.0 19.57443 3 GACGTGA 1015 0.0 19.505976 7 GTCCTAC 1805 0.0 18.769531 1 TAGGACC 1485 0.0 18.221294 4 GTAGGAC 2120 0.0 17.951141 3 TCCTACA 2015 0.0 17.794853 2 AGGACGT 1855 0.0 17.788853 5 GGTATCA 2315 0.0 17.770536 1 GGACGTG 1785 0.0 17.62375 6 ACGATTA 100 2.4861565E-5 17.598726 40 CTGTAGG 2140 0.0 17.373322 1 TGTAGGA 2155 0.0 17.251278 2 TTTAGGA 1570 0.0 16.533476 2 AACGCAG 5550 0.0 16.449614 6 GATATAC 645 0.0 16.030537 1 CCTACAG 2145 0.0 15.998496 3 CTTTAGG 1515 0.0 15.827917 1 >>END_MODULE