##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063869_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2772456 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.086630049313676 32.0 32.0 32.0 32.0 32.0 2 30.91441884019079 32.0 32.0 32.0 32.0 32.0 3 31.212690480930988 32.0 32.0 32.0 32.0 32.0 4 31.386578181944095 32.0 32.0 32.0 32.0 32.0 5 31.242914224788418 32.0 32.0 32.0 32.0 32.0 6 34.835030384612054 36.0 36.0 36.0 32.0 36.0 7 34.87096062119652 36.0 36.0 36.0 32.0 36.0 8 34.783281682378366 36.0 36.0 36.0 32.0 36.0 9 34.98935384366785 36.0 36.0 36.0 36.0 36.0 10 34.73611844516198 36.0 36.0 36.0 32.0 36.0 11 34.99753143061603 36.0 36.0 36.0 36.0 36.0 12 34.85900154952865 36.0 36.0 36.0 32.0 36.0 13 34.929940457125376 36.0 36.0 36.0 32.0 36.0 14 34.85462239977839 36.0 36.0 36.0 32.0 36.0 15 34.794755263924834 36.0 36.0 36.0 32.0 36.0 16 34.83018774689301 36.0 36.0 36.0 32.0 36.0 17 34.77638238442738 36.0 36.0 36.0 32.0 36.0 18 34.78463896271032 36.0 36.0 36.0 32.0 36.0 19 34.78511399279195 36.0 36.0 36.0 32.0 36.0 20 34.77573350127108 36.0 36.0 36.0 32.0 36.0 21 34.770848302010926 36.0 36.0 36.0 32.0 36.0 22 34.754963829903886 36.0 36.0 36.0 32.0 36.0 23 34.69451309596978 36.0 36.0 36.0 32.0 36.0 24 34.676321644058554 36.0 36.0 36.0 32.0 36.0 25 34.62882476764284 36.0 36.0 36.0 32.0 36.0 26 34.563087385336324 36.0 36.0 36.0 32.0 36.0 27 34.557212449900014 36.0 36.0 36.0 32.0 36.0 28 34.51930706925556 36.0 36.0 36.0 32.0 36.0 29 34.489346629847326 36.0 36.0 36.0 32.0 36.0 30 34.45777426224257 36.0 36.0 36.0 32.0 36.0 31 34.46350275712221 36.0 36.0 36.0 32.0 36.0 32 34.412538197179686 36.0 36.0 36.0 32.0 36.0 33 34.38121218154589 36.0 36.0 36.0 32.0 36.0 34 34.38174888979302 36.0 36.0 36.0 32.0 36.0 35 34.338603029227514 36.0 36.0 36.0 32.0 36.0 36 34.30018907423599 36.0 36.0 36.0 32.0 36.0 37 34.28043907640013 36.0 36.0 36.0 32.0 36.0 38 34.22178133755774 36.0 36.0 36.0 32.0 36.0 39 34.21363837694809 36.0 36.0 36.0 32.0 36.0 40 34.20514013567754 36.0 36.0 36.0 32.0 36.0 41 34.17862970593582 36.0 36.0 36.0 32.0 36.0 42 34.094872560646586 36.0 36.0 36.0 32.0 36.0 43 34.1004430728567 36.0 36.0 36.0 32.0 36.0 44 34.00772996938455 36.0 36.0 36.0 32.0 36.0 45 33.97046589738485 36.0 36.0 36.0 32.0 36.0 46 33.92006076922411 36.0 36.0 36.0 32.0 36.0 47 33.90656082549191 36.0 36.0 36.0 32.0 36.0 48 33.85010041638172 36.0 36.0 36.0 32.0 36.0 49 33.822476172750804 36.0 36.0 36.0 32.0 36.0 50 33.11590878268221 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 5.0 18 5.0 19 8.0 20 25.0 21 85.0 22 267.0 23 803.0 24 2061.0 25 4722.0 26 10253.0 27 19580.0 28 33553.0 29 54717.0 30 83624.0 31 127806.0 32 194622.0 33 328527.0 34 641644.0 35 1270149.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.82894809459173 19.370030512647833 13.118418579854293 25.68260281290614 2 15.042168539982384 20.933248113759475 38.918918528981266 25.105664817276875 3 17.85719824919881 25.60429512578248 29.18957815213647 27.34892847288224 4 11.837735206618248 17.031000672328073 37.07427638166305 34.056987739390635 5 13.825900212663427 37.69513384522604 33.34844628733513 15.130519654775403 6 33.203953322202395 36.96744363204714 17.052335963855835 12.776267081894627 7 29.72527177235722 30.925762746221842 20.99991740154643 18.349048079874507 8 27.318810469850558 34.59957525024743 19.005603695784533 19.076010584117476 9 27.192722060370798 14.374991208083296 18.765106316365447 39.66718041518046 10 15.6027135781344 27.373479130927837 31.560603196908993 25.463204094028775 11 36.72701630865063 21.07413826374098 23.59086080747929 18.60798462012909 12 25.476482034875225 23.445285856758723 29.414003112764682 21.66422899560137 13 29.46258627312715 20.233476227661864 25.639534778868473 24.664402720342512 14 23.093353993782387 20.768800990605047 25.603338855530872 30.534506160081687 15 24.21362266512526 29.307684954903124 22.379520734102474 24.09917164586914 16 24.673734813907473 26.36618023559048 25.25394616579343 23.70613878470862 17 22.945143223192723 27.00728163043886 25.96614698303598 24.08142816333244 18 23.819490933644204 25.457465748681308 27.982779117949192 22.740264199725296 19 25.414154603050363 24.8591591207071 25.94318032213327 23.783505954109263 20 25.82093869795371 24.874695033537293 25.651953733106915 23.652412535402078 21 26.44117706466757 24.44897231912788 24.890313858903443 24.219536757301107 22 25.50247939369194 25.317120007848647 25.50247939369194 23.677921204767475 23 23.464915523779258 25.421930236827745 26.42877006763364 24.68438417175936 24 24.767110065584664 25.393055304573902 26.09085042924175 23.748984200599686 25 24.258461050133278 25.3311378908603 26.34538181582089 24.06501924318553 26 23.373417748914626 26.514365606229596 26.83770536980633 23.274511275049452 27 24.215081162056105 25.726717919065557 25.914721135175828 24.143479783702514 28 23.325210254989635 26.058128344637833 26.1524527223855 24.464208677987035 29 23.768082799437018 25.209693022544478 26.165440165979774 24.856784012038727 30 23.339409989618947 25.645461372593292 26.717545136667052 24.297583501120705 31 24.806567018170618 25.0599326618759 25.647391783940858 24.486108536012622 32 23.96481697903591 25.949263443420044 25.38703487281594 24.6988847047281 33 23.20372019606634 25.688816651138197 26.603824152057097 24.50363900073837 34 24.31198931458456 25.653365325134352 26.55576784831212 23.47887751196897 35 24.6023461379476 25.724592462954295 26.23729163255045 23.435769766547658 36 23.357127372114405 26.010158487849093 26.29595388316332 24.336760256873173 37 24.502326366557746 25.833075128708543 25.39644178997666 24.26815671475705 38 23.996219670339382 26.071577367801186 25.77351568854845 24.15868727331098 39 24.958690146702732 25.086560419515493 25.420502023380244 24.534247410401537 40 25.504039821093638 25.456932621555335 25.930493435290725 23.10853412206031 41 24.206642492343175 25.42069707321877 26.860046826479795 23.512613607958265 42 25.235147992553753 26.374737006127898 25.80501463892515 22.585100362393202 43 23.86625100048081 25.697324753094502 26.361005577443798 24.075418668980895 44 23.515541898760247 26.232529183103935 25.54352550435379 24.708403413782023 45 23.750926088239346 26.443886086277157 25.60407644745698 24.201111378026514 46 23.80476435061881 25.556949442076682 25.650369496152102 24.98791671115241 47 24.78841345439383 25.481931100553023 25.864020476210403 23.865634968842745 48 24.690250548080687 26.029919181994533 25.028116413132008 24.251713856792772 49 24.409680003549227 26.040916349045983 25.181672297693332 24.367731349711462 50 24.192790344612163 26.76678614106588 24.83161828596739 24.208805228354567 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 25.0 2 27.0 3 81.0 4 135.0 5 172.0 6 209.0 7 231.0 8 253.0 9 362.0 10 471.0 11 782.5 12 1094.0 13 2124.5 14 3155.0 15 4594.0 16 6033.0 17 6879.0 18 7725.0 19 8166.5 20 8608.0 21 9317.0 22 10026.0 23 11862.0 24 13698.0 25 16336.5 26 18975.0 27 25914.0 28 32853.0 29 40702.0 30 48551.0 31 57236.5 32 65922.0 33 78978.5 34 92035.0 35 108530.5 36 125026.0 37 135163.5 38 145301.0 39 146786.5 40 148272.0 41 152306.0 42 156340.0 43 153953.0 44 151566.0 45 162553.5 46 173541.0 47 183314.0 48 193087.0 49 195040.0 50 196993.0 51 187781.0 52 178569.0 53 175051.0 54 171533.0 55 172921.5 56 174310.0 57 169205.0 58 164100.0 59 147841.5 60 131583.0 61 116474.0 62 101365.0 63 88191.5 64 75018.0 65 63807.5 66 52597.0 67 45842.5 68 39088.0 69 35963.5 70 32839.0 71 25290.5 72 17742.0 73 15087.0 74 12432.0 75 9738.5 76 7045.0 77 6222.0 78 5399.0 79 4450.0 80 3501.0 81 2864.5 82 2228.0 83 1886.0 84 1544.0 85 1118.0 86 692.0 87 498.5 88 305.0 89 252.5 90 200.0 91 171.5 92 143.0 93 118.5 94 94.0 95 94.0 96 94.0 97 73.0 98 52.0 99 58.0 100 64.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.005879263728621843 2 3.606910262958186E-4 3 3.967601289254005E-4 4 0.0 5 0.0 6 1.0820730788874559E-4 7 2.52483718407073E-4 8 0.0 9 8.295893604803827E-4 10 0.001009934873628292 11 3.606910262958186E-5 12 3.606910262958186E-5 13 3.967601289254005E-4 14 3.2462192366623674E-4 15 0.003282288339291949 16 6.492438473324735E-4 17 0.0 18 2.8855282103665487E-4 19 3.606910262958186E-5 20 7.213820525916372E-4 21 0.0 22 1.4427641051832743E-4 23 6.853129499620553E-4 24 3.2462192366623674E-4 25 0.0016591787209607653 26 0.00504967436814146 27 0.005879263728621843 28 0.0038954630839948406 29 0.00252483718407073 30 0.003534772057699022 31 0.006420300268065572 32 0.003462633852439859 33 0.0046529142392160595 34 0.002849459107736967 35 0.00252483718407073 36 0.006961336807509298 37 0.003859393981365259 38 0.007610580654841772 39 0.004147946802401914 40 0.002019869747256584 41 0.0033544265445511127 42 0.0019116624393678385 43 0.0014066950025536924 44 0.0016952478235903474 45 0.001514902310442438 46 0.0011542112841466195 47 0.002452698978811566 48 0.0019477315419974203 49 6.853129499620553E-4 50 0.001262418592035365 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2772456.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.78630150275444 #Duplication Level Percentage of deduplicated Percentage of total 1 69.40760898490124 31.085101025830753 2 15.384473352673297 13.780273240678357 3 6.2737585800930615 8.429353299706213 4 3.0971923067848652 5.548471538547141 5 1.780707262937141 3.9875646183023714 6 1.0356517294935201 2.7829806365367524 7 0.7000189871339916 2.194588299080501 8 0.44522386308049766 1.5951944134515383 9 0.3334487171332224 1.344054130311166 >10 1.3572275069305493 10.335475939567454 >50 0.08634270465146412 2.685841311709547 >100 0.07892355726684615 7.548815776078987 >500 0.012948297947005763 3.9771066576941183 >1k 0.006474148973488062 4.705179112505002 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 3181 0.1147358154646999 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 3056 0.11022717763600215 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 2923 0.10542998698626777 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2858 0.10308549531534494 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 3.606910262958186E-5 0.0 5 0.0 0.0 0.0 3.606910262958186E-5 0.0 6 0.0 0.0 0.0 3.606910262958186E-5 0.0 7 0.0 0.0 0.0 1.0820730788874558E-4 0.0 8 0.0 0.0 0.0 1.0820730788874558E-4 0.0 9 0.0 0.0 0.0 1.8034551314790928E-4 0.0 10 0.0 0.0 0.0 1.8034551314790928E-4 0.0 11 0.0 0.0 0.0 1.8034551314790928E-4 0.0 12 0.0 0.0 0.0 2.52483718407073E-4 1.4427641051832743E-4 13 0.0 0.0 0.0 2.52483718407073E-4 1.4427641051832743E-4 14 0.0 0.0 0.0 2.52483718407073E-4 1.4427641051832743E-4 15 0.0 0.0 0.0 2.52483718407073E-4 2.1641461577749115E-4 16 0.0 0.0 0.0 2.52483718407073E-4 2.1641461577749115E-4 17 3.606910262958186E-5 0.0 0.0 2.52483718407073E-4 2.1641461577749115E-4 18 3.606910262958186E-5 0.0 0.0 2.8855282103665487E-4 2.1641461577749115E-4 19 3.606910262958186E-5 0.0 0.0 2.8855282103665487E-4 2.1641461577749115E-4 20 3.606910262958186E-5 0.0 0.0 2.8855282103665487E-4 2.52483718407073E-4 21 3.606910262958186E-5 0.0 0.0 2.8855282103665487E-4 2.8855282103665487E-4 22 3.606910262958186E-5 0.0 0.0 3.2462192366623674E-4 2.8855282103665487E-4 23 3.606910262958186E-5 0.0 0.0 4.6889833418456417E-4 2.8855282103665487E-4 24 3.606910262958186E-5 0.0 0.0 7.57451155221219E-4 2.8855282103665487E-4 25 3.606910262958186E-5 0.0 0.0 8.656584631099646E-4 2.8855282103665487E-4 26 3.606910262958186E-5 0.0 0.0 0.0010820730788874558 3.9676012892540043E-4 27 3.606910262958186E-5 0.0 0.0 0.0011902803867762013 3.9676012892540043E-4 28 3.606910262958186E-5 0.0 0.0 0.0014427641051832742 3.9676012892540043E-4 29 3.606910262958186E-5 0.0 0.0 0.002019869747256584 3.9676012892540043E-4 30 7.213820525916372E-5 0.0 0.0 0.0037151175708469313 3.9676012892540043E-4 31 7.213820525916372E-5 0.0 0.0 0.009450104888950447 3.9676012892540043E-4 32 7.213820525916372E-5 0.0 0.0 0.015653990541238526 3.9676012892540043E-4 33 7.213820525916372E-5 0.0 0.0 0.021280770551453297 3.9676012892540043E-4 34 7.213820525916372E-5 0.0 0.0 0.028999558514183815 3.9676012892540043E-4 35 7.213820525916372E-5 0.0 0.0 0.03689869199006224 3.9676012892540043E-4 36 7.213820525916372E-5 0.0 0.0 0.04948680880778631 3.9676012892540043E-4 37 7.213820525916372E-5 0.0 0.0 0.07022654281979587 3.9676012892540043E-4 38 7.213820525916372E-5 0.0 0.0 0.10128204018386586 4.6889833418456417E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATCAA 6105 0.0 21.728786 1 TTAGGAC 1800 0.0 19.065496 3 TGTAGGA 3055 0.0 18.86593 2 GATATAC 1135 0.0 18.800945 1 TAGGACG 2880 0.0 18.713789 4 GTAGGAC 3080 0.0 18.070316 3 AGGACGT 3075 0.0 18.027836 5 GACGTGA 1625 0.0 18.004723 7 ACCGTCG 820 0.0 17.97418 8 GTCCTAC 2430 0.0 17.834616 1 ATACACT 1215 0.0 17.743446 4 GGACGTG 3060 0.0 17.397308 6 CTGTAGG 2985 0.0 17.39288 1 GTCCTAA 1600 0.0 17.186754 1 AACGCAG 7750 0.0 17.144442 6 CGTCGTA 860 0.0 17.13879 10 TTTAGGA 2110 0.0 16.99391 2 CCGTCGT 855 0.0 16.98172 9 GCGAGAA 1705 0.0 16.903101 20 ATACCGT 885 0.0 16.902609 6 >>END_MODULE