##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4063868_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2194091 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.311683517228776 32.0 32.0 32.0 32.0 32.0 2 31.385461678663283 32.0 32.0 32.0 32.0 32.0 3 31.474450695071443 32.0 32.0 32.0 32.0 32.0 4 31.565088685929616 32.0 32.0 32.0 32.0 32.0 5 31.512568074888417 32.0 32.0 32.0 32.0 32.0 6 35.093532127883485 36.0 36.0 36.0 36.0 36.0 7 35.11654028934989 36.0 36.0 36.0 36.0 36.0 8 35.062627302149274 36.0 36.0 36.0 36.0 36.0 9 35.172039810563916 36.0 36.0 36.0 36.0 36.0 10 35.02873217200198 36.0 36.0 36.0 36.0 36.0 11 35.174666866597605 36.0 36.0 36.0 36.0 36.0 12 35.08020360140031 36.0 36.0 36.0 36.0 36.0 13 35.12102415077588 36.0 36.0 36.0 36.0 36.0 14 35.066711453627036 36.0 36.0 36.0 36.0 36.0 15 35.037030825066054 36.0 36.0 36.0 36.0 36.0 16 35.04835806719047 36.0 36.0 36.0 36.0 36.0 17 35.021377417800814 36.0 36.0 36.0 36.0 36.0 18 35.01783107446318 36.0 36.0 36.0 36.0 36.0 19 35.016408161739875 36.0 36.0 36.0 36.0 36.0 20 35.007395773466094 36.0 36.0 36.0 36.0 36.0 21 34.99796954638618 36.0 36.0 36.0 36.0 36.0 22 34.98009335073158 36.0 36.0 36.0 36.0 36.0 23 34.936200914182685 36.0 36.0 36.0 36.0 36.0 24 34.9066000453035 36.0 36.0 36.0 32.0 36.0 25 34.88392596296143 36.0 36.0 36.0 32.0 36.0 26 34.8226213042212 36.0 36.0 36.0 32.0 36.0 27 34.81759781157664 36.0 36.0 36.0 32.0 36.0 28 34.78891349538374 36.0 36.0 36.0 32.0 36.0 29 34.76328876058468 36.0 36.0 36.0 32.0 36.0 30 34.73493989082495 36.0 36.0 36.0 32.0 36.0 31 34.730234981137976 36.0 36.0 36.0 32.0 36.0 32 34.690252592075716 36.0 36.0 36.0 32.0 36.0 33 34.67158654768649 36.0 36.0 36.0 32.0 36.0 34 34.66008975926705 36.0 36.0 36.0 32.0 36.0 35 34.623499207644535 36.0 36.0 36.0 32.0 36.0 36 34.598281475107456 36.0 36.0 36.0 32.0 36.0 37 34.57657544741763 36.0 36.0 36.0 32.0 36.0 38 34.540850402285045 36.0 36.0 36.0 32.0 36.0 39 34.53012751066387 36.0 36.0 36.0 32.0 36.0 40 34.511858897374815 36.0 36.0 36.0 32.0 36.0 41 34.493928009366975 36.0 36.0 36.0 32.0 36.0 42 34.43546233952922 36.0 36.0 36.0 32.0 36.0 43 34.41943292233549 36.0 36.0 36.0 32.0 36.0 44 34.35904117012467 36.0 36.0 36.0 32.0 36.0 45 34.32361647716526 36.0 36.0 36.0 32.0 36.0 46 34.28649723279481 36.0 36.0 36.0 32.0 36.0 47 34.26490605904677 36.0 36.0 36.0 32.0 36.0 48 34.2141588475592 36.0 36.0 36.0 32.0 36.0 49 34.19422075018766 36.0 36.0 36.0 32.0 36.0 50 33.60572920630913 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 3.0 18 5.0 19 9.0 20 31.0 21 72.0 22 254.0 23 717.0 24 1830.0 25 4088.0 26 8192.0 27 15013.0 28 24750.0 29 38468.0 30 55004.0 31 78413.0 32 113234.0 33 182397.0 34 380631.0 35 1290980.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.776646863254356 18.612168842854135 12.528978101990157 26.082206191901356 2 15.491279740174269 20.896947521655942 38.0344708457189 25.577301892450887 3 17.679086124323405 25.436172908603318 28.991232787805753 27.893508179267524 4 12.097629496679946 17.012785704877327 36.56279525325066 34.326789545192064 5 14.043127655142836 37.4867769841816 33.49879289418716 14.971302466488401 6 32.98397009781289 36.34158536101805 17.606913490668326 13.067531050500733 7 29.700253727173326 30.72933686828565 21.404829065730695 18.165580338810322 8 27.62990579237862 33.640415844381955 19.51879822614387 19.21088013709556 9 27.642635114809988 14.419751510897605 18.801673609655158 39.13593976463724 10 15.867116121392884 27.309388140557306 31.740613090034664 25.082882648015147 11 36.41982032650423 21.173187438442618 23.386131204220792 19.020861030832357 12 24.977519143480507 23.703322882526642 29.393292614839233 21.92586535915362 13 29.460325794420722 20.24577010076647 25.395575281336214 24.898328823476596 14 23.432203795389693 20.242397393352938 25.751623799099672 30.5737750121577 15 24.73674638910805 28.270404519261056 22.447717329227565 24.545131762403333 16 25.075909293521708 25.984952139087884 24.704863025998307 24.2342755413921 17 23.62171851577715 26.348405786268664 25.661606560530075 24.368269137424107 18 24.092071098365743 25.402684579052696 27.074131518030054 23.431112804551507 19 25.471641786963257 24.88661591520133 25.789085320526816 23.852656977308598 20 25.692101332723205 24.727505253912916 25.424152913363645 24.15624050000023 21 26.539236522095027 24.350995469194302 24.78611871613347 24.323649292577198 22 25.60262997295919 24.922986330102077 25.223885426812288 24.250498270126446 23 24.18314058687173 24.824185510607208 25.782129499734285 25.210544402786777 24 24.730912763595196 25.17114203467142 25.74678088897235 24.351164312761043 25 24.6404250771063 24.90231530836367 25.832148689477762 24.625110925052265 26 24.17348158263452 25.714848297281357 26.15988791054722 23.9517822095369 27 24.745117486617758 25.39440242995289 25.34016241011654 24.520317673312817 28 24.051331019441704 25.338799769370485 25.932511240909843 24.677357970277964 29 24.403802863314148 25.07945421008181 25.599045774649493 24.917697151954556 30 24.143277900384778 25.287716237268697 25.980422989587066 24.58858287275946 31 25.061750284992552 24.92354997932921 25.184954581235296 24.829745154442946 32 24.54129862079653 25.37387990993701 25.147765289286333 24.93705617998013 33 24.116716446346196 25.123370499831132 25.82929542876234 24.930617625060336 34 24.72142409171127 25.184684159094555 25.90304719746802 24.190844551726148 35 25.111165602564057 25.13596022650618 25.73212508158525 24.02074908934451 36 24.150154587790958 25.618818368575763 25.556645953163752 24.674381090469524 37 24.927666758431585 25.39844813975493 25.218686132983777 24.455198968829706 38 24.4838071397088 25.461700834906253 25.50641574657721 24.548076278807727 39 25.05569766106287 25.05004585257531 25.147402811683566 24.746853674678256 40 25.394958136397406 25.13643842609262 25.554709826210214 23.913893611299756 41 24.496926637660472 25.355854611684336 25.911047058040648 24.23617169261454 42 25.314156039074714 25.80051621360104 25.36976089456362 23.51556685276062 43 24.438870804691582 25.21715469691321 25.684234418597867 24.659740079797345 44 24.279257886528068 25.54308044728079 25.23971563194774 24.937946034243396 45 24.378502645329018 25.665616556733283 25.30450453406841 24.65137626386929 46 24.467631270219346 25.280598269328763 25.21820258497709 25.033567875474805 47 24.85026460355956 25.245517737394586 25.54783716044898 24.356380498596877 48 25.06407092262584 25.623765697546958 24.78878131020536 24.52338206962184 49 24.575630014639422 25.65726984844645 25.002233286358354 24.76486685055577 50 24.546489989075013 26.18264007296086 24.709476024508067 24.561393913456055 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 30.0 2 37.0 3 112.5 4 188.0 5 224.0 6 260.0 7 251.0 8 242.0 9 350.0 10 458.0 11 751.0 12 1044.0 13 1945.5 14 2847.0 15 3864.5 16 4882.0 17 5301.5 18 5721.0 19 5883.0 20 6045.0 21 6709.5 22 7374.0 23 8577.5 24 9781.0 25 11583.5 26 13386.0 27 17549.0 28 21712.0 29 26770.0 30 31828.0 31 37300.0 32 42772.0 33 50683.5 34 58595.0 35 67540.5 36 76486.0 37 86814.5 38 97143.0 39 102221.5 40 107300.0 41 113750.5 42 120201.0 43 122209.5 44 124218.0 45 134411.0 46 144604.0 47 152885.0 48 161166.0 49 164570.5 50 167975.0 51 162828.0 52 157681.0 53 154778.5 54 151876.0 55 151434.0 56 150992.0 57 145652.5 58 140313.0 59 126582.0 60 112851.0 61 98109.0 62 83367.0 63 71685.5 64 60004.0 65 50747.0 66 41490.0 67 35465.0 68 29440.0 69 26155.0 70 22870.0 71 17767.0 72 12664.0 73 10980.5 74 9297.0 75 7216.0 76 5135.0 77 4483.0 78 3831.0 79 3157.5 80 2484.0 81 1993.5 82 1503.0 83 1279.0 84 1055.0 85 755.0 86 455.0 87 321.5 88 188.0 89 138.0 90 88.0 91 80.0 92 72.0 93 59.0 94 46.0 95 45.5 96 45.0 97 39.5 98 34.0 99 28.0 100 22.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008796353478502031 2 2.2788480514253964E-4 3 3.190387271995555E-4 4 0.0 5 0.0 6 1.8230784411403173E-4 7 9.115392205701586E-5 8 4.557696102850793E-5 9 0.001412885791883746 10 0.0011394240257126982 11 0.0 12 9.115392205701586E-5 13 3.6461568822806345E-4 14 3.6461568822806345E-4 15 0.004740003946964826 16 0.0011394240257126982 17 0.0 18 1.8230784411403173E-4 19 0.0 20 5.469235323420953E-4 21 0.0 22 0.0 23 7.748083374846348E-4 24 3.190387271995555E-4 25 0.0019142323631973332 26 0.005879427972677523 27 0.006335197582962603 28 0.004375388258736762 29 0.002734617661710476 30 0.0040563495315372065 31 0.007930391218960381 32 0.003235964233024063 33 0.004101926492565714 34 0.0034182720771380945 35 0.003053656388910032 36 0.008750776517473524 37 0.0036005799212521267 38 0.008750776517473524 39 0.004694426985936317 40 0.002780194622738984 41 0.0035094259991951112 42 0.0017319245190833014 43 0.0015040397139407617 44 0.0015040397139407617 45 0.0015951936359977774 46 0.0013217318698267302 47 0.0024611558955394282 48 0.0017319245190833014 49 6.83654415427619E-4 50 0.0017319245190833014 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2194091.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.17817264005923 #Duplication Level Percentage of deduplicated Percentage of total 1 73.99996353145174 39.35182836033628 2 14.774112413193588 15.713206010249014 3 5.055524235208302 8.065306216977314 4 2.227746247909913 4.738698982783901 5 1.1460881288965856 3.047343618959255 6 0.7021597073688056 2.240374208361109 7 0.4503599674116198 1.6764524068030597 8 0.30673054184817516 1.3049095766704937 9 0.21423744065377326 1.0253480044545717 >10 0.9839443946581005 9.096715529114734 >50 0.06976861676271234 2.586283322392995 >100 0.059200983777318875 6.6069898180864355 >500 0.007924311517410182 2.925343296184614 >1k 0.0022394793418767565 1.62120064862614 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 9.115392205701586E-5 7 0.0 0.0 0.0 0.0 9.115392205701586E-5 8 0.0 0.0 0.0 0.0 1.367308830855238E-4 9 0.0 0.0 0.0 0.0 1.367308830855238E-4 10 0.0 0.0 0.0 4.557696102850793E-5 1.367308830855238E-4 11 0.0 0.0 0.0 4.557696102850793E-5 1.367308830855238E-4 12 0.0 0.0 0.0 4.557696102850793E-5 1.8230784411403173E-4 13 0.0 0.0 0.0 4.557696102850793E-5 2.734617661710476E-4 14 0.0 0.0 0.0 4.557696102850793E-5 2.734617661710476E-4 15 0.0 0.0 0.0 1.367308830855238E-4 3.6461568822806345E-4 16 0.0 0.0 0.0 1.8230784411403173E-4 3.6461568822806345E-4 17 0.0 0.0 0.0 2.2788480514253966E-4 3.6461568822806345E-4 18 4.557696102850793E-5 0.0 0.0 3.190387271995555E-4 3.6461568822806345E-4 19 4.557696102850793E-5 0.0 0.0 3.190387271995555E-4 3.6461568822806345E-4 20 4.557696102850793E-5 0.0 0.0 3.190387271995555E-4 3.6461568822806345E-4 21 4.557696102850793E-5 0.0 0.0 4.101926492565714E-4 3.6461568822806345E-4 22 4.557696102850793E-5 0.0 0.0 4.101926492565714E-4 3.6461568822806345E-4 23 4.557696102850793E-5 0.0 0.0 9.115392205701587E-4 3.6461568822806345E-4 24 4.557696102850793E-5 0.0 0.0 0.0018686554021688253 3.6461568822806345E-4 25 4.557696102850793E-5 0.0 0.0 0.0022332710903968885 3.6461568822806345E-4 26 4.557696102850793E-5 0.0 0.0 0.0024611558955394282 4.5576961028507933E-4 27 4.557696102850793E-5 0.0 0.0 0.0028713485447959997 4.5576961028507933E-4 28 4.557696102850793E-5 0.0 0.0 0.0036917338433091426 4.5576961028507933E-4 29 4.557696102850793E-5 0.0 0.0 0.004831157869021841 5.013465713135873E-4 30 4.557696102850793E-5 0.0 0.0 0.009069815244673079 5.013465713135873E-4 31 4.557696102850793E-5 0.0 0.0 0.019871555008429458 5.013465713135873E-4 32 4.557696102850793E-5 0.0 0.0 0.03167598791481301 5.469235323420952E-4 33 4.557696102850793E-5 0.0 0.0 0.041702919341084756 5.469235323420952E-4 34 4.557696102850793E-5 0.0 0.0 0.05255023606586965 6.38077454399111E-4 35 4.557696102850793E-5 0.0 0.0 0.06672467094573561 6.38077454399111E-4 36 4.557696102850793E-5 0.0 0.0 0.08741661125267822 6.38077454399111E-4 37 4.557696102850793E-5 0.0 0.0 0.11813548298589256 6.38077454399111E-4 38 4.557696102850793E-5 0.0 0.0 0.15938263271669223 6.83654415427619E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 1090 0.0 21.796696 4 GTATCAA 4205 0.0 20.613577 1 TTAGGAC 890 0.0 19.279602 3 GACGTGA 785 0.0 19.056042 7 TACCGTA 70 8.129886E-4 18.855873 7 AGGACGT 1250 0.0 18.478756 5 GTAGGAC 1250 0.0 18.12678 3 TAACGGC 160 1.1023076E-9 17.876648 36 GGACGTG 1255 0.0 17.703987 6 GTCCTAC 1310 0.0 17.297726 1 ACCGTCG 510 0.0 17.25374 8 CGTGAAA 945 0.0 16.994339 9 CGTCGTA 505 0.0 16.989729 10 TGTAGGA 1505 0.0 16.66333 2 CCGTCGT 530 0.0 16.60341 9 TCGTCGA 80 0.0019893355 16.499641 9 AACGCAG 5240 0.0 16.330961 6 GTCCTAA 860 0.0 16.116297 1 GGCGTTA 495 0.0 15.999287 42 ACGTGAA 1005 0.0 15.979023 8 >>END_MODULE