##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062989_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1609449 Sequences flagged as poor quality 0 Sequence length 38 %GC 51 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.127136057122655 32.0 32.0 32.0 32.0 32.0 2 31.092135258712766 32.0 32.0 32.0 32.0 32.0 3 31.25276538740898 32.0 32.0 32.0 32.0 32.0 4 31.384639090769575 32.0 32.0 32.0 32.0 32.0 5 31.26294837549994 32.0 32.0 32.0 32.0 32.0 6 34.78527247523842 36.0 36.0 36.0 32.0 36.0 7 34.81782958018552 36.0 36.0 36.0 32.0 36.0 8 34.73631099836031 36.0 36.0 36.0 32.0 36.0 9 34.88866189608991 36.0 36.0 36.0 32.0 36.0 10 34.68468525563718 36.0 36.0 36.0 32.0 36.0 11 34.913374701528284 36.0 36.0 36.0 36.0 36.0 12 34.78389001453292 36.0 36.0 36.0 32.0 36.0 13 34.862203772844 36.0 36.0 36.0 32.0 36.0 14 34.797176549241385 36.0 36.0 36.0 32.0 36.0 15 34.75399655410019 36.0 36.0 36.0 32.0 36.0 16 34.771140309509654 36.0 36.0 36.0 32.0 36.0 17 34.722303720093024 36.0 36.0 36.0 32.0 36.0 18 34.73709014700062 36.0 36.0 36.0 32.0 36.0 19 34.72950867035861 36.0 36.0 36.0 32.0 36.0 20 34.7250512442457 36.0 36.0 36.0 32.0 36.0 21 34.714755795306345 36.0 36.0 36.0 32.0 36.0 22 34.69653713786519 36.0 36.0 36.0 32.0 36.0 23 34.62713761044929 36.0 36.0 36.0 32.0 36.0 24 34.602286869605685 36.0 36.0 36.0 32.0 36.0 25 34.575608795308206 36.0 36.0 36.0 32.0 36.0 26 34.50747616109613 36.0 36.0 36.0 32.0 36.0 27 34.496903598685016 36.0 36.0 36.0 32.0 36.0 28 34.45970950306596 36.0 36.0 36.0 32.0 36.0 29 34.424025240936494 36.0 36.0 36.0 32.0 36.0 30 34.40021212228533 36.0 36.0 36.0 32.0 36.0 31 34.41319047698933 36.0 36.0 36.0 32.0 36.0 32 34.384701845165644 36.0 36.0 36.0 32.0 36.0 33 34.34491369406548 36.0 36.0 36.0 32.0 36.0 34 34.34438183502553 36.0 36.0 36.0 32.0 36.0 35 34.3153190936774 36.0 36.0 36.0 32.0 36.0 36 34.278860032222205 36.0 36.0 36.0 32.0 36.0 37 34.281455330364615 36.0 36.0 36.0 32.0 36.0 38 33.79206858993357 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 9.0 21 36.0 22 133.0 23 384.0 24 1055.0 25 2719.0 26 5840.0 27 11420.0 28 19857.0 29 31934.0 30 49539.0 31 73036.0 32 106508.0 33 173170.0 34 400292.0 35 733516.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.18309201017571 18.317154677559866 11.915328318385008 26.58442499387941 2 16.302535836798803 20.096442944138023 35.93894556460006 27.66207565446311 3 18.33515693880328 23.753595174497608 28.1405623912283 29.77068549547081 4 12.244593633208964 15.607181357548718 35.5356038882969 36.61262112094542 5 14.816508517205898 36.33115204716152 32.61826415019311 16.23407528543948 6 35.54668156205206 35.29342687270845 15.769329465338094 13.390562099901397 7 31.321025992795036 29.798576653084353 20.075168722653633 18.805228631466978 8 28.816435431567395 32.54912852670031 18.550504193796325 20.083931847935972 9 27.301919677392295 13.987827648449564 18.045961656160582 40.664291017997556 10 16.13297072205995 25.897565421945686 30.28910109560051 27.68036276039385 11 38.80175695752321 20.811521008492125 21.23348658142022 19.153235452564445 12 25.30230899328092 23.34710204629419 27.402099852992894 23.948489107431996 13 29.35297571523103 18.549313583253856 25.297975389031624 26.7997353124835 14 23.82622872796839 19.452495854171207 23.919863257549633 32.80141216031077 15 25.517677167776053 26.89367603446894 21.345876756579425 26.242770041175582 16 26.864196211493763 25.325468934360686 22.530285247044482 25.280049607101073 17 24.825142020654273 25.720665892488668 24.055002674828465 25.39918941202859 18 26.07656409118897 24.022507081616133 25.253052442171203 24.647876385023697 19 26.13646036624957 24.571328448431732 24.504846068437086 24.787365116881617 20 26.252090000987916 23.709853496445056 24.005482621692266 26.03257388087476 21 27.584132935101312 23.83414924505125 23.50173693200211 25.079980887845327 22 26.384619829519295 23.64312258418875 24.38542631670839 25.586831269583566 23 24.562178538453605 23.33703647093472 25.19537778838184 26.905407202229835 24 25.352900278294 24.529077963949153 24.326772702956102 25.79124905480074 25 25.406584257306093 24.08383014020361 24.516712282805564 25.992873319684733 26 25.225216828865033 25.037202172917567 24.92654318341246 24.811037814804944 27 26.18382203090749 23.981638425099785 24.077571937707834 25.756967606284885 28 24.938037800514337 24.09992488112391 25.27672514009453 25.68531217826722 29 25.029062741348124 24.270728677951272 25.121578875751887 25.578629704948714 30 24.999425269144908 24.530009959930386 25.334881689323492 25.13568308160122 31 25.823620381882247 24.320186598022055 23.911848092111025 25.94434492798467 32 25.569371878201796 24.184177317827405 23.804109356680453 26.442341447290346 33 24.887523618331493 23.757261025357128 24.783761399087513 26.571453957223866 34 25.908556282305312 24.04015287219415 24.894047590200124 25.157243255300415 35 26.602831155258727 23.71848999253782 24.893612658742214 24.78506619346124 36 25.004209515181902 24.65353049397651 24.32149139239578 26.020768598445805 37 26.549910279797796 24.348285871926276 24.13473439340693 24.967069454868998 38 25.28039168781785 23.699349775854408 24.870001770796765 26.150256765530976 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 22.0 1 40.0 2 58.0 3 58.0 4 183.5 5 309.0 6 309.0 7 420.0 8 531.0 9 527.0 10 523.0 11 523.0 12 881.5 13 1240.0 14 1805.5 15 2371.0 16 2371.0 17 3319.5 18 4268.0 19 4268.0 20 5467.0 21 6666.0 22 7681.0 23 8696.0 24 8696.0 25 10810.0 26 12924.0 27 12924.0 28 16719.0 29 20514.0 30 25173.5 31 29833.0 32 29833.0 33 40130.5 34 50428.0 35 50428.0 36 56262.5 37 62097.0 38 71836.5 39 81576.0 40 81576.0 41 87171.0 42 92766.0 43 107374.0 44 121982.0 45 121982.0 46 124333.5 47 126685.0 48 126685.0 49 138234.5 50 149784.0 51 154044.0 52 158304.0 53 158304.0 54 150580.5 55 142857.0 56 142857.0 57 140298.0 58 137739.0 59 123928.0 60 110117.0 61 110117.0 62 105575.5 63 101034.0 64 84544.0 65 68054.0 66 68054.0 67 57690.0 68 47326.0 69 47326.0 70 37880.5 71 28435.0 72 22168.5 73 15902.0 74 15902.0 75 11959.5 76 8017.0 77 8017.0 78 7850.0 79 7683.0 80 6111.0 81 4539.0 82 4539.0 83 4256.0 84 3973.0 85 3973.0 86 2570.0 87 1167.0 88 955.0 89 743.0 90 743.0 91 444.5 92 146.0 93 108.0 94 70.0 95 70.0 96 51.5 97 33.0 98 33.0 99 35.0 100 37.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007890899307775518 2 0.0 3 0.0 4 2.4853226166222106E-4 5 6.213306541555527E-5 6 1.2426613083111053E-4 7 1.863991962466658E-4 8 0.0029823871399466528 9 0.003976516186595537 10 7.455967849866632E-4 11 0.0047221129715822 12 1.863991962466658E-4 13 2.4853226166222106E-4 14 0.0 15 0.0 16 1.2426613083111053E-4 17 0.0 18 0.0 19 0.0 20 0.0 21 1.2426613083111053E-4 22 0.0 23 1.863991962466658E-4 24 0.0 25 2.4853226166222106E-4 26 0.0 27 6.213306541555527E-5 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 6.213306541555527E-5 38 2.4853226166222106E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 1609449.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.75498964595837 #Duplication Level Percentage of deduplicated Percentage of total 1 79.98181300253165 38.99512464803409 2 11.719632898937258 11.427811612842381 3 3.388691061659625 4.956467928737001 4 1.4830565235305218 2.8922562179640643 5 0.8165669351796889 1.9905856234958843 6 0.5085143570956868 1.4875567329012833 7 0.34940588559075036 1.1924696233949765 8 0.2673039769419351 1.042592210250203 9 0.19870095422437084 0.8718896669266124 >10 1.0630400185331572 9.437528180708414 >50 0.09887383367576243 3.3506321360218925 >100 0.09954618232258335 10.406051504042669 >500 0.016526874748646888 5.5471165811689955 >1k 0.008327495028387966 6.40191733351169 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 3271 0.20323725697428124 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 2870 0.1783218977426436 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 2565 0.15937131279089925 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 2441 0.15166681267937038 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT 2435 0.15129401428687705 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 2426 0.15073481669813707 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 2403 0.1493057561935793 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 2278 0.14153912301663488 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG 2193 0.1362578124563127 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 2163 0.13439382049384604 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGC 2051 0.12743491716730385 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG 2008 0.12476319535443497 No Hit ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA 1995 0.12395546550403275 No Hit GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCG 1959 0.12171867514907275 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC 1948 0.12103521142950165 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC 1897 0.11786642509330834 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 1891 0.11749362670081501 No Hit GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCG 1889 0.1173693605699839 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGG 1875 0.1164994976541661 No Hit ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGT 1842 0.1144491064954528 No Hit GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTG 1729 0.10742807010349505 No Hit ACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGG 1717 0.10668247331850839 No Hit GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT 1672 0.1038864853748084 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTA 1629 0.10121476356193951 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.2426613083111053E-4 2 0.0 0.0 0.0 0.0 1.2426613083111053E-4 3 0.0 0.0 0.0 0.0 1.2426613083111053E-4 4 0.0 0.0 0.0 6.213306541555527E-5 1.2426613083111053E-4 5 0.0 0.0 0.0 6.213306541555527E-5 1.2426613083111053E-4 6 0.0 0.0 0.0 6.213306541555527E-5 1.863991962466658E-4 7 0.0 0.0 0.0 6.213306541555527E-5 1.863991962466658E-4 8 0.0 0.0 0.0 6.213306541555527E-5 1.863991962466658E-4 9 0.0 0.0 0.0 6.213306541555527E-5 1.863991962466658E-4 10 0.0 0.0 0.0 6.213306541555527E-5 2.4853226166222106E-4 11 0.0 0.0 0.0 1.2426613083111053E-4 2.4853226166222106E-4 12 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 3.1066532707777633E-4 13 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 4.970645233244421E-4 14 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 4.970645233244421E-4 15 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 8.077298504022183E-4 16 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 8.077298504022183E-4 17 0.0 6.213306541555527E-5 0.0 1.2426613083111053E-4 8.077298504022183E-4 18 0.0 6.213306541555527E-5 0.0 1.863991962466658E-4 8.698629158177736E-4 19 0.0 6.213306541555527E-5 0.0 1.863991962466658E-4 8.698629158177736E-4 20 0.0 6.213306541555527E-5 0.0 1.863991962466658E-4 9.319959812333289E-4 21 0.0 6.213306541555527E-5 0.0 1.863991962466658E-4 9.941290466488843E-4 22 0.0 6.213306541555527E-5 0.0 1.863991962466658E-4 9.941290466488843E-4 23 0.0 6.213306541555527E-5 0.0 4.970645233244421E-4 9.941290466488843E-4 24 0.0 6.213306541555527E-5 0.0 6.834637195711079E-4 9.941290466488843E-4 25 0.0 6.213306541555527E-5 0.0 8.698629158177736E-4 0.0010562621120644394 26 0.0 6.213306541555527E-5 0.0 9.319959812333289E-4 0.0010562621120644394 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGAA 315 0.0 20.316986 13 ATAACGA 345 0.0 18.550291 12 ACGAACG 345 0.0 18.550291 15 CTAGCGG 685 0.0 18.218552 29 TCTAGCG 690 0.0 18.086535 28 GATAACG 355 0.0 18.028868 11 GGTATAT 80 2.7957267E-6 18.001259 1 TACCGTC 480 0.0 18.001257 7 GTATCAA 2040 0.0 17.805166 1 ACCGTCG 470 0.0 17.703365 8 CGATAAC 355 0.0 17.578146 10 TAGCGGC 725 0.0 17.434078 30 CGAACGA 370 0.0 17.296894 16 CGGTCCA 780 0.0 17.231438 10 CGTCGTA 485 0.0 17.155304 10 ATACCGT 495 0.0 17.132511 6 CGCCGGT 740 0.0 17.082275 7 CAAGACG 615 0.0 16.910702 4 CCGATAA 370 0.0 16.866043 9 CCGTCGT 490 0.0 16.654224 9 >>END_MODULE