SRR4062933_2.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR4062933_2.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86369
Sequences flagged as poor quality	0
Sequence length	38
%GC	49

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT	385	0.44576178953096596	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT	214	0.24777408560942002	No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG	143	0.16556866468293022	No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT	136	0.1574639048732763	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT	131	0.15167479072352347	No Hit
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG	123	0.142412208083919	No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCC	122	0.14125438525396844	No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGT	121	0.14009656242401788	No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC	118	0.1366230939341662	No Hit
GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGG	114	0.13199180261436397	No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA	113	0.13083397978441338	No Hit
CTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAA	113	0.13083397978441338	No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG	111	0.12851833412451227	No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC	109	0.12620268846461113	No Hit
GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCG	109	0.12620268846461113	No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTC	107	0.12388704280471001	No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCT	104	0.12041357431485833	No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA	103	0.11925575148490777	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	103	0.11925575148490777	No Hit
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC	103	0.11925575148490777	No Hit
TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGC	100	0.1157822829950561	No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA	95	0.10999316884530329	No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT	94	0.10883534601535273	No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG	92	0.1065197003554516	No Hit
GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTA	89	0.10304623186559991	No Hit
CTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAG	89	0.10304623186559991	No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATA	88	0.10188840903564936	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAATTG	30	8.3545665E-4	26.666183	12
TAATTGC	30	8.3545665E-4	26.666183	13
AATAATT	30	8.3545665E-4	26.666183	11
GGGCGCC	40	1.5771682E-4	23.999565	17
AGGGGCG	40	1.5771682E-4	23.999565	32
GGCGCCG	40	1.5771682E-4	23.999565	18
GCATCGA	40	1.5771682E-4	23.999565	8
GCGCCGA	50	2.759504E-5	22.399597	19
AGCATCG	45	3.5007502E-4	21.332947	7
CAAGGGG	45	3.5007502E-4	21.332947	30
AGGGGGC	45	3.5007502E-4	21.332947	14
CGCCGAG	45	3.5007502E-4	21.332947	20
TAAGAGC	45	3.5007502E-4	21.332947	3
GTATCAA	230	0.0	20.185236	1
GGGGAAT	40	0.004451028	19.999638	7
GGCAAGG	40	0.004451028	19.999638	28
CTAAGAG	40	0.004451028	19.999638	2
GTCACCA	40	0.004451028	19.999638	9
CCGAGAG	40	0.004451028	19.999638	22
CGAGAGG	40	0.004451028	19.999638	23

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content