Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062912_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1568312 |
Sequences flagged as poor quality | 0 |
Sequence length | 38 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT | 4452 | 0.28387208667663066 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT | 3299 | 0.21035355209932716 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC | 2174 | 0.13862037655772574 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT | 2050 | 0.1307137865424737 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT | 1987 | 0.126696728712144 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA | 1859 | 0.11853508740607736 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC | 1830 | 0.11668596554767165 | No Hit |
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG | 1806 | 0.11515565780278415 | No Hit |
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC | 1729 | 0.11024592045460342 | No Hit |
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG | 1668 | 0.10635638826968104 | No Hit |
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG | 1655 | 0.10552747157453364 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT | 1597 | 0.1018292278577222 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTAGCGG | 405 | 0.0 | 17.776768 | 29 |
ATCGTTT | 365 | 0.0 | 17.094921 | 29 |
TCTAGCG | 435 | 0.0 | 16.91858 | 28 |
CGTCGTA | 420 | 0.0 | 16.762556 | 10 |
TAGCGGC | 430 | 0.0 | 16.743235 | 30 |
TCGTTTA | 380 | 0.0 | 16.42012 | 30 |
CATCGTT | 380 | 0.0 | 16.42012 | 28 |
TACCGTC | 440 | 0.0 | 16.365837 | 7 |
ATACCGT | 445 | 0.0 | 16.181953 | 6 |
GTCGTAG | 460 | 0.0 | 15.652283 | 11 |
ACCGTCG | 450 | 0.0 | 15.646549 | 8 |
CCGTCGT | 450 | 0.0 | 15.64605 | 9 |
CTAGATA | 320 | 0.0 | 15.501098 | 3 |
GTTTTCG | 465 | 0.0 | 15.138926 | 28 |
CGCCCCT | 255 | 0.0 | 15.06085 | 5 |
GGCATCG | 425 | 0.0 | 15.057968 | 26 |
GCATCGT | 430 | 0.0 | 14.882876 | 27 |
CGTTTAT | 420 | 0.0 | 14.856299 | 31 |
AGCGGCG | 500 | 0.0 | 14.719165 | 31 |
TTAATAC | 185 | 1.0913936E-11 | 14.703743 | 3 |