##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062890_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 363588 Sequences flagged as poor quality 0 Sequence length 38 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.05530435547928 32.0 32.0 32.0 32.0 32.0 2 30.717559435404908 32.0 32.0 32.0 32.0 32.0 3 30.79696524637777 32.0 32.0 32.0 32.0 32.0 4 30.818915915816802 32.0 32.0 32.0 32.0 32.0 5 30.786112302936292 32.0 32.0 32.0 32.0 32.0 6 34.400134217850976 36.0 36.0 36.0 32.0 36.0 7 34.274747791456264 36.0 36.0 36.0 32.0 36.0 8 34.23037889039242 36.0 36.0 36.0 32.0 36.0 9 34.32855869830688 36.0 36.0 36.0 32.0 36.0 10 34.0956302188191 36.0 36.0 36.0 32.0 36.0 11 34.40262054853296 36.0 36.0 36.0 32.0 36.0 12 34.20282572582153 36.0 36.0 36.0 32.0 36.0 13 34.28774326985489 36.0 36.0 36.0 32.0 36.0 14 34.184178245706676 36.0 36.0 36.0 32.0 36.0 15 34.14265872361024 36.0 36.0 36.0 32.0 36.0 16 34.14848674873758 36.0 36.0 36.0 32.0 36.0 17 34.05309581174296 36.0 36.0 36.0 32.0 36.0 18 34.09643882636391 36.0 36.0 36.0 32.0 36.0 19 34.07090993102083 36.0 36.0 36.0 32.0 36.0 20 34.03379099420223 36.0 36.0 36.0 32.0 36.0 21 33.97856364896531 36.0 36.0 36.0 32.0 36.0 22 33.967204638216884 36.0 36.0 36.0 32.0 36.0 23 33.91474691133921 36.0 36.0 36.0 32.0 36.0 24 33.89797793106483 36.0 36.0 36.0 32.0 36.0 25 33.86019340572296 36.0 36.0 36.0 32.0 36.0 26 33.82419936851601 36.0 36.0 36.0 32.0 36.0 27 33.83498905354412 36.0 36.0 36.0 32.0 36.0 28 33.795755085426364 36.0 36.0 36.0 32.0 36.0 29 33.77272902296006 36.0 36.0 36.0 32.0 36.0 30 33.71684709066306 36.0 36.0 36.0 27.0 36.0 31 33.754898401487395 36.0 36.0 36.0 27.0 36.0 32 33.672467188136025 36.0 36.0 36.0 27.0 36.0 33 33.6003223428716 36.0 36.0 36.0 27.0 36.0 34 33.5854401135351 36.0 36.0 36.0 27.0 36.0 35 33.50373224638877 36.0 36.0 36.0 21.0 36.0 36 33.437286159059155 36.0 36.0 36.0 21.0 36.0 37 33.432924078902495 36.0 36.0 36.0 21.0 36.0 38 32.790749419672814 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 1.0 11 2.0 12 1.0 13 0.0 14 105.0 15 207.0 16 237.0 17 252.0 18 333.0 19 425.0 20 568.0 21 745.0 22 1009.0 23 1448.0 24 2060.0 25 2906.0 26 4156.0 27 5906.0 28 8039.0 29 11050.0 30 14322.0 31 19079.0 32 25168.0 33 36716.0 34 77794.0 35 151055.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.03912583715192 16.85318998942545 11.41941311244272 24.688271060979908 2 16.260804715685655 20.618190724387215 37.28710479026262 25.833899769664516 3 18.992185157575943 25.814286775284085 28.341113333094935 26.852414734045038 4 12.252907896220629 15.370799743659564 35.45776846297504 36.91852389714477 5 14.17954987389538 37.441382667697134 32.423876541240475 15.955190917167005 6 33.11376125593395 35.38557590226246 17.39258387286639 14.1080789689372 7 29.392334180446 31.370672299415826 20.77241273089321 18.46458078924497 8 29.206214743651447 31.29017264093601 19.904452029362986 19.599160586049553 9 28.477522450046067 13.864708390060096 18.706492292036252 38.95127686785759 10 16.68358155589477 26.40868022608193 30.43139843502895 26.476339782994344 11 37.51265182186235 21.515248195740185 21.506721967963387 19.46537801443408 12 25.35824105703803 24.512764658316417 28.108652243510406 22.020342041135148 13 30.297387032263924 19.357802455347933 25.348730376609552 24.996080135778595 14 24.844592364396522 19.904004841016615 24.972769281549127 30.27863351303774 15 25.58438950313481 26.224831430072708 24.250410592601355 23.940368474191125 16 25.448083884383905 25.583141703433938 24.496627680526366 24.47214673165579 17 23.374808465218383 25.366220004346495 26.10567493143261 25.153296599002505 18 25.05789742940914 23.55999053837733 28.023731069878483 23.35838096233504 19 25.06360588282215 25.325180778233445 26.48067618898305 23.130537149961356 20 25.693602110167696 22.96182609819761 26.885934874151822 24.45863691748287 21 27.53357702981844 23.778835812931316 24.548982718453544 24.1386044387967 22 25.516277739270116 24.186388091230153 25.589442299017506 24.707891870482225 23 23.719107150224865 23.89184580049786 26.289007165353244 26.100039883924026 24 24.06378425364061 25.859469986631385 25.91283442171107 24.163911338016934 25 24.87834399284781 24.029709098411388 25.98583316140568 25.106113747335122 26 23.59648543667954 25.398056756786495 27.043651448629497 23.961806357904468 27 25.068283277267238 24.89389617641153 25.899235062259496 24.138585484061732 28 23.908606823407744 24.39791843156239 26.931941953725808 24.76153279130406 29 23.257285265526402 25.161879507732255 27.37867976739964 24.202155459341697 30 23.9903184993674 25.028054348424007 27.32521040761318 23.65641674459541 31 23.970349588799955 25.314244849685068 25.647055587644747 25.06834997387023 32 23.30534231466379 25.650701792507064 25.62347174814134 25.420484144687805 33 23.27094192235226 25.008457909864813 26.372175539449614 25.348424628333312 34 24.13354898336414 25.307796408766837 26.867683302526185 23.69097130534284 35 25.449889143793982 25.020493268855184 26.392854588566685 23.136762998784157 36 23.82673565551787 26.369805549366365 25.5382533277218 24.265205467393965 37 24.901391249814335 26.169414508826648 25.84346926762717 23.08572497373184 38 23.960304537253005 25.910421159177925 25.677177309334155 24.452096994234914 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 416.0 1 321.0 2 226.0 3 226.0 4 549.5 5 873.0 6 873.0 7 1007.5 8 1142.0 9 1076.0 10 1010.0 11 1010.0 12 1226.5 13 1443.0 14 1670.5 15 1898.0 16 1898.0 17 2738.5 18 3579.0 19 3579.0 20 3996.5 21 4414.0 22 3888.5 23 3363.0 24 3363.0 25 3560.5 26 3758.0 27 3758.0 28 4845.5 29 5933.0 30 7258.0 31 8583.0 32 8583.0 33 10291.5 34 12000.0 35 12000.0 36 12854.5 37 13709.0 38 16111.5 39 18514.0 40 18514.0 41 19611.0 42 20708.0 43 23822.5 44 26937.0 45 26937.0 46 30196.5 47 33456.0 48 33456.0 49 33410.0 50 33364.0 51 32575.0 52 31786.0 53 31786.0 54 29644.0 55 27502.0 56 27502.0 57 27466.0 58 27430.0 59 24599.5 60 21769.0 61 21769.0 62 21379.0 63 20989.0 64 17265.0 65 13541.0 66 13541.0 67 11422.5 68 9304.0 69 9304.0 70 7583.5 71 5863.0 72 4651.0 73 3439.0 74 3439.0 75 2631.0 76 1823.0 77 1823.0 78 1773.0 79 1723.0 80 1364.5 81 1006.0 82 1006.0 83 1028.5 84 1051.0 85 1051.0 86 696.0 87 341.0 88 306.0 89 271.0 90 271.0 91 188.5 92 106.0 93 88.5 94 71.0 95 71.0 96 70.5 97 70.0 98 70.0 99 123.5 100 177.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.12431653409903518 2 0.05638249887235002 3 0.013476792413390979 4 0.0024753292187860987 5 2.7503657986512205E-4 6 5.500731597302441E-4 7 0.0 8 2.7503657986512205E-4 9 8.251097395953663E-4 10 8.251097395953663E-4 11 0.0011001463194604882 12 0.0016502194791907325 13 0.015127011892581714 14 0.0077010242362234175 15 0.024478255607995863 16 0.011001463194604882 17 0.0211778166496144 18 0.0038505121181117087 19 0.005775768177167563 20 0.0041255486979768306 21 0.005775768177167563 22 0.00660087791676293 23 0.009076207135549028 24 0.013751828993256103 25 0.01732730453150269 26 0.01980263375028879 27 0.00797606081608854 28 0.004400585277841953 29 0.012651682673795614 30 0.0022002926389209764 31 0.004950658437572197 32 0.00522569501743732 33 0.006325841336897807 34 0.009901316875144395 35 0.014851975312716592 36 0.014026865573121225 37 0.008251097395953661 38 0.005500731597302441 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 363588.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.84200475749793 #Duplication Level Percentage of deduplicated Percentage of total 1 82.50093949878477 43.595150374928345 2 10.853702025729339 11.470627481601094 3 2.8183644933503014 4.4678408989793965 4 1.1097127281772055 2.345577810471836 5 0.5785985567744097 1.52871538448774 6 0.353274023377412 1.1200624574405784 7 0.2531760079061114 0.9364829469981351 8 0.16866827197732095 0.7130215704211639 9 0.13304523214961406 0.6327339111191089 >10 0.934591244573489 10.132446241979657 >50 0.1576194550165823 5.891475488812032 >100 0.1294358438546767 12.760910535873634 >500 0.006263024702645649 2.0232124419963036 >1k 0.0026095936261023535 2.3817424548909596 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 2799 0.7698273870424767 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT 1933 0.5316457088792809 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 1581 0.434832832766758 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTAC 1318 0.3624982122622309 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT 1005 0.2764117627644477 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 867 0.23845671474306082 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 742 0.20407714225992057 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 643 0.1768485208532735 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG 642 0.17657348427340835 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 635 0.1746482282143525 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 569 0.15649581394325446 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 565 0.15539566762379395 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 563 0.1548455944640637 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 538 0.14796967996743565 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGG 524 0.14411916784932396 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 524 0.14411916784932396 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG 524 0.14411916784932396 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG 476 0.1309174120157981 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 467 0.128442082797012 No Hit GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA 456 0.12541668041849566 No Hit CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCT 426 0.117165583022542 No Hit GCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTA 424 0.11661550986281174 No Hit GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCG 422 0.11606543670308152 No Hit ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA 421 0.11579040012321638 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAA 417 0.11469025380375589 No Hit CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAAT 417 0.11469025380375589 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG 403 0.11083974168564419 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGC 401 0.11028966852591394 No Hit GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTT 386 0.10616411982793711 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 380 0.10451390034874639 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 2.7503657986512205E-4 0.0 0.0 11 0.0 0.0 2.7503657986512205E-4 0.0 0.0 12 0.0 0.0 2.7503657986512205E-4 0.0 2.7503657986512205E-4 13 0.0 0.0 2.7503657986512205E-4 2.7503657986512205E-4 2.7503657986512205E-4 14 0.0 0.0 2.7503657986512205E-4 2.7503657986512205E-4 2.7503657986512205E-4 15 0.0 0.0 2.7503657986512205E-4 5.500731597302441E-4 2.7503657986512205E-4 16 0.0 0.0 2.7503657986512205E-4 8.251097395953662E-4 2.7503657986512205E-4 17 0.0 0.0 2.7503657986512205E-4 8.251097395953662E-4 2.7503657986512205E-4 18 0.0 0.0 2.7503657986512205E-4 0.0016502194791907323 2.7503657986512205E-4 19 0.0 0.0 2.7503657986512205E-4 0.0016502194791907323 2.7503657986512205E-4 20 0.0 0.0 2.7503657986512205E-4 0.0019252560590558544 5.500731597302441E-4 21 0.0 0.0 2.7503657986512205E-4 0.0033004389583814646 5.500731597302441E-4 22 0.0 0.0 2.7503657986512205E-4 0.0038505121181117087 5.500731597302441E-4 23 0.0 0.0 2.7503657986512205E-4 0.007150951076493174 5.500731597302441E-4 24 0.0 0.0 2.7503657986512205E-4 0.009901316875144395 5.500731597302441E-4 25 0.0 0.0 2.7503657986512205E-4 0.012926719253660736 5.500731597302441E-4 26 0.0 0.0 2.7503657986512205E-4 0.017052267951637567 5.500731597302441E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCATCCA 50 9.640298E-7 25.60165 9 TTAGGAC 70 1.1150405E-9 25.14102 3 CTAAGAC 35 0.002064717 22.855473 3 GTCCTAG 45 3.5059077E-4 21.355274 1 TTGATTA 60 4.7088943E-6 21.331776 25 ATACCGT 85 1.053013E-8 20.701523 6 TCGCGTA 55 5.81636E-5 20.36495 9 GCGTAAC 55 5.81636E-5 20.36495 11 GTCGCGT 55 5.822524E-5 20.362148 8 CATCGTT 55 5.822524E-5 20.362148 28 GTTAGGA 40 0.004468892 20.006794 2 CCGTCGT 80 1.2586861E-7 20.00129 9 CGTCGTA 80 1.2586861E-7 20.00129 10 TATGCTG 40 0.00448315 19.995789 5 ATACTCT 40 0.00448315 19.995789 6 ACCGTCG 90 2.028537E-8 19.554127 8 TACCGTC 90 2.028537E-8 19.554127 7 AGCGTAT 75 1.5038313E-6 19.198597 8 TAGCGTA 75 1.5038313E-6 19.198597 7 AATAGCG 75 1.505814E-6 19.195957 5 >>END_MODULE