##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062886_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 512475 Sequences flagged as poor quality 0 Sequence length 38 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.10414556807649 32.0 32.0 32.0 32.0 32.0 2 31.267125225620763 32.0 32.0 32.0 32.0 32.0 3 31.362772818186254 32.0 32.0 32.0 32.0 32.0 4 31.467019854627054 32.0 32.0 32.0 32.0 32.0 5 31.390315625152446 32.0 32.0 32.0 32.0 32.0 6 34.91209717547198 36.0 36.0 36.0 36.0 36.0 7 34.92468120396117 36.0 36.0 36.0 36.0 36.0 8 34.88284306551539 36.0 36.0 36.0 32.0 36.0 9 34.98273867017903 36.0 36.0 36.0 36.0 36.0 10 34.823136738377485 36.0 36.0 36.0 32.0 36.0 11 35.00110639543392 36.0 36.0 36.0 36.0 36.0 12 34.89522025464657 36.0 36.0 36.0 32.0 36.0 13 34.9470803453827 36.0 36.0 36.0 36.0 36.0 14 34.900966876432996 36.0 36.0 36.0 32.0 36.0 15 34.86388018927752 36.0 36.0 36.0 32.0 36.0 16 34.87142592321577 36.0 36.0 36.0 32.0 36.0 17 34.83381238109176 36.0 36.0 36.0 32.0 36.0 18 34.84063612859164 36.0 36.0 36.0 32.0 36.0 19 34.8268598468218 36.0 36.0 36.0 32.0 36.0 20 34.80199229230694 36.0 36.0 36.0 32.0 36.0 21 34.78292599639007 36.0 36.0 36.0 32.0 36.0 22 34.77356553978243 36.0 36.0 36.0 32.0 36.0 23 34.708395531489344 36.0 36.0 36.0 32.0 36.0 24 34.68629298990194 36.0 36.0 36.0 32.0 36.0 25 34.66603444070442 36.0 36.0 36.0 32.0 36.0 26 34.59457144250939 36.0 36.0 36.0 32.0 36.0 27 34.58713888482365 36.0 36.0 36.0 32.0 36.0 28 34.5465125128055 36.0 36.0 36.0 32.0 36.0 29 34.496535440753206 36.0 36.0 36.0 32.0 36.0 30 34.47356456412508 36.0 36.0 36.0 32.0 36.0 31 34.465478316015414 36.0 36.0 36.0 32.0 36.0 32 34.42713107956486 36.0 36.0 36.0 32.0 36.0 33 34.387794526562274 36.0 36.0 36.0 32.0 36.0 34 34.36161763988487 36.0 36.0 36.0 32.0 36.0 35 34.3128581882043 36.0 36.0 36.0 32.0 36.0 36 34.26595638811649 36.0 36.0 36.0 32.0 36.0 37 34.25757354017269 36.0 36.0 36.0 32.0 36.0 38 33.81525732962584 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 12.0 22 41.0 23 109.0 24 337.0 25 838.0 26 1806.0 27 3599.0 28 6317.0 29 10088.0 30 15337.0 31 21949.0 32 30787.0 33 48785.0 34 116475.0 35 255993.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.52791259057175 18.994455925485767 12.433284742183947 25.044346741758535 2 15.03117225230499 22.045368066734962 37.38133567491097 25.54212400604908 3 17.83208937021318 26.2555246597395 29.210985901751307 26.701400068296017 4 11.554319722913313 17.238694570466855 36.990097077906235 34.21688862871359 5 13.262500609785842 38.374359724864625 33.47538904336797 14.88775062198156 6 32.303624567052054 37.1583004048978 17.42836235913947 13.109712668910678 7 28.40163598543536 31.698973996729592 21.721492212287842 18.177897805547207 8 27.66150922115353 33.22405715144313 20.156382021726447 18.9580516056769 9 27.424563813657056 14.11973390730467 19.010914171641108 39.444788107397166 10 15.634311538844301 27.444977159594043 32.02320530607705 24.897505995484607 11 36.93909052413021 21.830074797687185 22.588784444891104 18.642050233291506 12 23.60202391150363 25.097907597083164 29.8105461165759 21.489522374837307 13 29.372083992717663 20.28711756521807 25.832190183677973 24.508608258386293 14 23.679789258012583 20.352992828918484 25.9747304746573 29.99248743841163 15 24.67925264647056 27.569930240499534 23.844675350017074 23.90614176301283 16 24.55085613932387 26.464120200985413 25.264061661544467 23.72096199814625 17 22.9203375774428 26.252792819161915 26.503731889360456 24.323137714034832 18 24.096394946094932 24.996731547880387 27.977950143909457 22.928923362115224 19 24.247036440801992 26.038733596760817 26.87526220791258 22.83896775452461 20 24.70910776135421 24.461095663203082 27.031367383774818 23.798429191667886 21 26.300261086416093 24.73881601798335 25.610665126425925 23.350257769174632 22 25.059368749695103 25.079272159617545 26.4822674276794 23.37909166300795 23 23.34659582065787 24.98063312603786 26.891172803250125 24.78159825005415 24 23.368359432167424 26.107419874140202 26.639348260890777 23.8848724328016 25 23.94672910873701 25.034977315966632 26.78862383530904 24.229669739987315 26 23.205034391921558 26.089467778916042 27.524854870969317 23.180642958193083 27 24.78955029913713 25.19522941651674 26.650132494526552 23.36508778981958 28 23.40758085760281 25.406702765988587 27.567393531391776 23.61832284501683 29 23.07975998829211 25.692375237816478 27.459680960046835 23.76818381384458 30 23.35157812576223 25.760866383726032 27.77169618030148 23.115859310210254 31 23.41987414020196 25.85062685984682 26.348016976437876 24.381482023513342 32 23.499292648421875 25.84106541782526 26.483633347968194 24.176008585784672 33 23.02746475437826 25.51246402263525 27.052441582516217 24.407629640470265 34 23.934240694668034 25.93785062685985 27.115469047270597 23.012439631201524 35 24.93253329430704 25.21488853114786 27.04541684960242 22.80716132494268 36 23.160544416800818 26.24830479535587 26.751939118981415 23.839211668861896 37 24.404312405483193 26.40148299917069 26.403044050929314 22.7911605444168 38 23.292063027464753 25.71618127713547 26.802673301136643 24.189082394263135 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 384.0 1 276.5 2 169.0 3 169.0 4 499.5 5 830.0 6 830.0 7 1012.5 8 1195.0 9 1115.5 10 1036.0 11 1036.0 12 1301.0 13 1566.0 14 1921.5 15 2277.0 16 2277.0 17 3346.5 18 4416.0 19 4416.0 20 5034.5 21 5653.0 22 5856.0 23 6059.0 24 6059.0 25 6748.0 26 7437.0 27 7437.0 28 9538.5 29 11640.0 30 13621.0 31 15602.0 32 15602.0 33 18229.0 34 20856.0 35 20856.0 36 22671.5 37 24487.0 38 27679.5 39 30872.0 40 30872.0 41 32186.5 42 33501.0 43 37350.5 44 41200.0 45 41200.0 46 43621.0 47 46042.0 48 46042.0 49 46475.0 50 46908.0 51 45630.0 52 44352.0 53 44352.0 54 41045.5 55 37739.0 56 37739.0 57 36266.0 58 34793.0 59 30732.5 60 26672.0 61 26672.0 62 25495.0 63 24318.0 64 20171.5 65 16025.0 66 16025.0 67 13651.5 68 11278.0 69 11278.0 70 9084.0 71 6890.0 72 5177.5 73 3465.0 74 3465.0 75 2655.0 76 1845.0 77 1845.0 78 1598.5 79 1352.0 80 1040.5 81 729.0 82 729.0 83 658.0 84 587.0 85 587.0 86 378.0 87 169.0 88 131.5 89 94.0 90 94.0 91 59.5 92 25.0 93 15.5 94 6.0 95 6.0 96 4.5 97 3.0 98 3.0 99 3.0 100 3.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.007024732913800673 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 1.9513146982779649E-4 8 0.002341577637933558 9 0.004292892336211523 10 0.001170788818966779 11 0.005073418215522709 12 3.9026293965559297E-4 13 3.9026293965559297E-4 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 1.9513146982779649E-4 22 0.0 23 3.9026293965559297E-4 24 0.0 25 0.0 26 0.0 27 1.9513146982779649E-4 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 512475.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.415077642763684 #Duplication Level Percentage of deduplicated Percentage of total 1 86.22283335050308 54.678276715012274 2 9.79780886858385 12.42657620260407 3 1.8972836709607601 3.6094917391297296 4 0.6228872774549943 1.580017802499926 5 0.28998864652237955 0.9194826267368326 6 0.17166249816625953 0.6531594389738477 7 0.11175985529092794 0.496108193043276 8 0.08464579437759419 0.4294255698070837 9 0.06793459964480893 0.38772701199950627 >10 0.5610257568973148 7.430075749367368 >50 0.08809400281063272 3.92759509717425 >100 0.07758454182226836 9.651883050668575 >500 0.004945628163969294 2.1618728303376056 >1k 0.0015455088012404047 1.6483079726456547 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 2746 0.5358310161471291 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT 2198 0.4288989706814967 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT 1247 0.2433289428752622 No Hit TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTAC 1123 0.21913264061661544 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 1095 0.21366895946143713 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 966 0.1884969998536514 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 915 0.1785452948924338 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 843 0.16449582906483243 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 763 0.14888531147860873 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG 751 0.14654373384067515 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 725 0.14147031562515244 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 725 0.14147031562515244 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 704 0.13737255475876872 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 694 0.13542124006049075 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGC 664 0.12956729596565686 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG 591 0.11532269866822771 No Hit GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTT 564 0.11005414898287721 No Hit GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGT 557 0.10868822869408264 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 554 0.10810283428459924 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 0.0 11 0.0 0.0 0.0 0.0 0.0 12 0.0 0.0 0.0 0.0 0.0 13 0.0 0.0 0.0 0.0 0.0 14 0.0 0.0 0.0 0.0 0.0 15 0.0 0.0 0.0 1.9513146982779649E-4 0.0 16 0.0 0.0 0.0 1.9513146982779649E-4 0.0 17 0.0 0.0 0.0 1.9513146982779649E-4 0.0 18 0.0 0.0 0.0 3.9026293965559297E-4 0.0 19 0.0 0.0 0.0 3.9026293965559297E-4 0.0 20 0.0 0.0 0.0 5.853944094833894E-4 0.0 21 0.0 0.0 0.0 0.0013659202887945753 0.0 22 0.0 0.0 0.0 0.0021464461681057613 0.0 23 0.0 0.0 0.0 0.002926972047416947 0.0 24 0.0 0.0 0.0 0.005853944094833894 0.0 25 0.0 0.0 0.0 0.007610127323284062 0.0 26 0.0 0.0 0.0 0.010341967900873213 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGCGG 175 0.0 23.77143 29 TCTAGCG 170 0.0 23.529411 28 TAGACTG 55 2.214545E-6 23.272728 5 CGCGGTC 75 6.3850166E-8 21.333332 10 GAACCGC 85 1.053013E-8 20.705883 6 TAGCGGC 195 0.0 20.512821 30 GGATAGG 40 0.004480149 20.0 1 GCCGCGC 40 0.004480149 20.0 8 AGTGCGG 40 0.004480149 20.0 10 CAGTGCG 40 0.004480149 20.0 9 AGCGGCG 210 0.0 19.809525 31 GCATAAA 50 7.1884954E-4 19.2 1 CGAATGT 50 7.1884954E-4 19.2 23 AACCGCG 85 2.3895518E-7 18.82353 7 TCGCGTA 105 5.9535523E-9 18.285715 9 CGGTCCA 220 0.0 18.181818 10 CGCGTAA 115 9.367795E-10 18.086956 10 TACCGTC 205 0.0 17.95122 7 AGACGTT 45 0.008843771 17.777779 5 ACAATAC 45 0.008843771 17.777779 3 >>END_MODULE