##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062874_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1784932 Sequences flagged as poor quality 0 Sequence length 38 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.143463168344788 32.0 32.0 32.0 32.0 32.0 2 30.742003616944512 32.0 32.0 32.0 32.0 32.0 3 30.793851530478474 32.0 32.0 32.0 32.0 32.0 4 30.85894476652332 32.0 32.0 32.0 32.0 32.0 5 30.777280030835907 32.0 32.0 32.0 32.0 32.0 6 34.41455752936246 36.0 36.0 36.0 32.0 36.0 7 34.32356134575435 36.0 36.0 36.0 32.0 36.0 8 34.29261787003651 36.0 36.0 36.0 32.0 36.0 9 34.43303162249318 36.0 36.0 36.0 32.0 36.0 10 34.142109055134874 36.0 36.0 36.0 32.0 36.0 11 34.45365313636598 36.0 36.0 36.0 32.0 36.0 12 34.25463322972528 36.0 36.0 36.0 32.0 36.0 13 34.3517747454805 36.0 36.0 36.0 32.0 36.0 14 34.235554631773084 36.0 36.0 36.0 32.0 36.0 15 34.18039958945215 36.0 36.0 36.0 32.0 36.0 16 34.19908489511085 36.0 36.0 36.0 32.0 36.0 17 34.11966674360704 36.0 36.0 36.0 32.0 36.0 18 34.1488527294037 36.0 36.0 36.0 32.0 36.0 19 34.13002624189605 36.0 36.0 36.0 32.0 36.0 20 34.10616875040618 36.0 36.0 36.0 32.0 36.0 21 34.08999838649316 36.0 36.0 36.0 32.0 36.0 22 34.06369038148232 36.0 36.0 36.0 32.0 36.0 23 34.01516360287115 36.0 36.0 36.0 32.0 36.0 24 33.99675169698342 36.0 36.0 36.0 32.0 36.0 25 33.97360571719259 36.0 36.0 36.0 32.0 36.0 26 33.92441784897128 36.0 36.0 36.0 32.0 36.0 27 33.93226352600547 36.0 36.0 36.0 32.0 36.0 28 33.915492578989 36.0 36.0 36.0 32.0 36.0 29 33.875200847987486 36.0 36.0 36.0 32.0 36.0 30 33.832373446159295 36.0 36.0 36.0 32.0 36.0 31 33.85963722987766 36.0 36.0 36.0 32.0 36.0 32 33.80611866446453 36.0 36.0 36.0 32.0 36.0 33 33.766364208832606 36.0 36.0 36.0 32.0 36.0 34 33.76484706420189 36.0 36.0 36.0 32.0 36.0 35 33.72977626038415 36.0 36.0 36.0 27.0 36.0 36 33.66732122008009 36.0 36.0 36.0 27.0 36.0 37 33.66367178133397 36.0 36.0 36.0 27.0 36.0 38 33.04001833123055 36.0 36.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 7.0 10 14.0 11 13.0 12 13.0 13 11.0 14 233.0 15 493.0 16 631.0 17 836.0 18 1065.0 19 1400.0 20 1966.0 21 2737.0 22 4110.0 23 6113.0 24 8998.0 25 13397.0 26 19405.0 27 27712.0 28 38516.0 29 51591.0 30 68552.0 31 92018.0 32 123415.0 33 182374.0 34 392063.0 35 747243.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.30122022771152 17.69588205400324 11.514419598133703 25.488478120151537 2 16.315331874740387 20.098368136078538 38.31973680301316 25.266563186167918 3 18.76336386008795 24.80808712452316 28.604600081583985 27.823948933804903 4 12.288575973143006 15.506417586579571 36.56189473578055 35.643111704496874 5 14.277870810113377 36.88259941745386 33.515563416461106 15.323966355971658 6 33.28851359830761 36.136079438498356 17.24142374370283 13.333983219491206 7 29.643370167603024 30.914006808102496 21.345631094069688 18.096991930224792 8 27.90332601837498 32.92734100610277 19.842268059141915 19.327064916380333 9 27.82928620690235 14.16291628406508 19.052746635860586 38.955050873171984 10 16.047042820238584 26.367857060820977 31.514229993719635 26.070870125220807 11 37.13615010322678 21.21911250178581 22.8605443987215 18.784192996265908 12 25.360107032045743 23.852447719350142 28.919998251989202 21.86744699661491 13 29.50937247505735 19.644600138735267 25.54196965978481 25.30405772642257 14 23.605845166184725 20.519937628551467 25.45211175986432 30.422105445399488 15 24.82966265388359 27.922044081775375 22.805563540775335 24.4427297235657 16 25.13160113831133 25.84262548963468 24.738436609293522 24.28733676276048 17 23.315420822593296 26.243247786618852 25.96329709738877 24.47803429339908 18 24.491353257501817 24.475441413599246 27.684703451413405 23.348501877485525 19 25.4002840662373 24.912665039962572 26.224244240935235 23.462806652864895 20 25.65261190434036 24.17218914091442 25.909443374935847 24.26575557980937 21 26.908026991956646 24.09050059725643 24.947726055395812 24.05374635539111 22 25.657058366404062 24.670903529841535 25.55609529524415 24.11594280851026 23 23.55730791233161 24.50549678362098 26.55550768137761 25.3816876226698 24 24.52202104328902 25.27822572059649 26.141058843437165 24.05869439267732 25 24.374404297963924 24.806139436161192 26.18842030886573 24.631035957009153 26 23.754351735062613 25.939226720563834 26.76051602766507 23.545905516708476 27 24.69648852292949 25.23173776429087 25.63593414523727 24.43583956754237 28 23.593952575769293 25.177076084727585 26.499894107324746 24.729077232178376 29 23.805049471055554 25.247971599876962 26.429293005696497 24.51768592337099 30 23.553631496500614 25.43201687056414 26.822079193942017 24.192272438993236 31 24.65353940280194 25.204234565099853 25.347945328279646 24.79428070381856 32 23.73698889861286 25.574763197674617 25.46887028510406 25.21937761860847 33 23.506400221427604 25.095053625596854 26.41325383156038 24.985292321415166 34 24.48151240257521 25.20162939637252 26.496517641521596 23.82034055953068 35 25.20047269587377 25.065712907298156 26.346743379820325 23.38707101700775 36 23.698035735097676 25.910691392557126 25.885420869081877 24.505852003263314 37 24.74321477397521 25.75096931800354 25.501692104260513 24.00412380376073 38 23.910310283389922 25.713909525890564 25.973767662845553 24.40201252787396 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1118.0 1 833.0 2 548.0 3 548.0 4 1219.0 5 1890.0 6 1890.0 7 2274.5 8 2659.0 9 2495.0 10 2331.0 11 2331.0 12 3018.0 13 3705.0 14 4744.5 15 5784.0 16 5784.0 17 8492.5 18 11201.0 19 11201.0 20 13292.5 21 15384.0 22 15512.0 23 15640.0 24 15640.0 25 18323.0 26 21006.0 27 21006.0 28 27307.5 29 33609.0 30 41966.5 31 50324.0 32 50324.0 33 62748.5 34 75173.0 35 75173.0 36 81707.0 37 88241.0 38 97603.0 39 106965.0 40 106965.0 41 110352.0 42 113739.0 43 125666.0 44 137593.0 45 137593.0 46 139739.0 47 141885.0 48 141885.0 49 149384.5 50 156884.0 51 156641.5 52 156399.0 53 156399.0 54 148077.5 55 139756.0 56 139756.0 57 135654.5 58 131553.0 59 117698.5 60 103844.0 61 103844.0 62 99776.5 63 95709.0 64 78966.0 65 62223.0 66 62223.0 67 52011.5 68 41800.0 69 41800.0 70 33657.5 71 25515.0 72 19988.0 73 14461.0 74 14461.0 75 10774.5 76 7088.0 77 7088.0 78 7181.5 79 7275.0 80 5726.5 81 4178.0 82 4178.0 83 4396.5 84 4615.0 85 4615.0 86 3079.5 87 1544.0 88 1379.5 89 1215.0 90 1215.0 91 848.0 92 481.0 93 432.0 94 383.0 95 383.0 96 354.5 97 326.0 98 326.0 99 607.0 100 888.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.12045276794858291 2 0.057201058639768904 3 0.015014577586148941 4 0.003977742569464831 5 5.042208890870913E-4 6 2.2409817292759612E-4 7 0.0 8 2.8012271615949515E-4 9 1.680736296956971E-4 10 2.8012271615949515E-4 11 0.001512662667261274 12 0.0025771289886673556 13 0.01333384128919197 14 0.007899460595697764 15 0.021569449144281126 16 0.010252491411437522 17 0.01860014835299048 18 0.005490405236726105 19 0.007675362422770168 20 0.005826552496117499 21 0.005826552496117499 22 0.006778969731059782 23 0.009019951460335743 24 0.012885644943336777 25 0.015294700302308435 26 0.01675133842633781 27 0.008739828744176248 28 0.005938601582581297 29 0.008459706028016755 30 0.0026891780751311534 31 0.0054343806934942064 32 0.006162699755508893 33 0.008403681484784854 34 0.012437448597481585 35 0.015406749388772234 36 0.013669988548583364 37 0.009636221435886633 38 0.006274748841972692 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 1784932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.29681460847046 #Duplication Level Percentage of deduplicated Percentage of total 1 75.20173785057167 36.320043912038564 2 14.258190981836858 13.772504130038804 3 4.875914893298123 7.064734729448984 4 2.1273233127908733 4.109717586005521 5 1.0423972624917355 2.5172233667470234 6 0.5996146387709467 1.737568622714724 7 0.3946559138954946 1.3342436455283027 8 0.2530074650902795 0.9775563708819432 9 0.18369679065563888 0.7984772858219759 >10 0.8654286640739722 7.489684901897668 >50 0.08166637941124326 2.783083312472618 >100 0.09369764969718226 9.934304170607719 >500 0.01534462594317775 5.1613444957448325 >1k 0.0070910771404079 5.2959770364633725 >5k 2.324943324723902E-4 0.7035364335880007 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 7527 0.421696736906504 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT 5004 0.28034681433242276 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT 2666 0.14936143225624282 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 2491 0.13955713719066049 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 2405 0.13473902647271718 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 2402 0.13457095284302148 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGG 2378 0.1332263638054559 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 2354 0.13188177476789031 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 2354 0.13188177476789031 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 2265 0.1268955904202513 No Hit GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCG 2195 0.12297387239401839 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 2193 0.12286182330755457 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 2126 0.11910817891101734 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 2075 0.11625092720619049 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG 1967 0.11020027653714538 No Hit CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAAT 1953 0.1094159329318988 No Hit ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGA 1867 0.1045978222139555 No Hit CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCT 1788 0.10017188329863545 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.680736296956971E-4 2 0.0 0.0 0.0 0.0 2.2409817292759612E-4 3 0.0 0.0 0.0 0.0 2.2409817292759612E-4 4 0.0 0.0 0.0 0.0 3.361472593913942E-4 5 0.0 0.0 0.0 0.0 3.361472593913942E-4 6 0.0 0.0 0.0 0.0 5.042208890870913E-4 7 0.0 0.0 0.0 0.0 5.042208890870913E-4 8 0.0 0.0 0.0 0.0 5.042208890870913E-4 9 0.0 0.0 0.0 5.602454323189903E-5 5.602454323189903E-4 10 0.0 0.0 0.0 5.602454323189903E-5 5.602454323189903E-4 11 0.0 0.0 0.0 5.602454323189903E-5 5.602454323189903E-4 12 0.0 0.0 0.0 5.602454323189903E-5 0.0010084417781741825 13 0.0 0.0 0.0 5.602454323189903E-5 0.0010084417781741825 14 0.0 0.0 0.0 5.602454323189903E-5 0.0010644663214060817 15 0.0 0.0 0.0 1.1204908646379806E-4 0.0012885644943336778 16 0.0 0.0 0.0 1.1204908646379806E-4 0.001512662667261274 17 0.0 0.0 0.0 1.1204908646379806E-4 0.001512662667261274 18 0.0 0.0 0.0 1.680736296956971E-4 0.001624711753725072 19 0.0 0.0 0.0 1.680736296956971E-4 0.001624711753725072 20 0.0 0.0 0.0 2.2409817292759612E-4 0.001680736296956971 21 0.0 0.0 5.602454323189903E-5 7.283190620146874E-4 0.001848809926652668 22 0.0 0.0 5.602454323189903E-5 0.0012325399511017787 0.001848809926652668 23 0.0 0.0 5.602454323189903E-5 0.0029132762480587496 0.001848809926652668 24 0.0 0.0 5.602454323189903E-5 0.004594012545015721 0.001848809926652668 25 0.0 0.0 5.602454323189903E-5 0.006218724298740793 0.001848809926652668 26 0.0 0.0 5.602454323189903E-5 0.007451264249842571 0.001960859013116466 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 920 0.0 17.911161 4 CGGTAAC 45 0.00885321 17.777403 29 TCTAGCG 580 0.0 17.378946 28 AGGACGT 940 0.0 17.359392 5 GGACGTG 905 0.0 16.970592 6 TTAGGAC 545 0.0 16.734062 3 TAGCGGC 610 0.0 16.524242 30 CTAGCGG 615 0.0 16.3899 29 GACGTGA 490 0.0 16.325274 7 TGTAGGA 1025 0.0 16.080866 2 GTATTAG 520 0.0 16.012226 1 ATCGTTT 495 0.0 15.838051 29 GTCCTAC 745 0.0 15.689831 1 GTAGGAC 995 0.0 15.1156845 3 CATCGTT 510 0.0 15.058507 28 CTGTAGG 1100 0.0 14.993265 1 TCTAGTA 75 6.2384567E-4 14.935948 2 GTACGAA 75 6.2464183E-4 14.933437 19 AGCGGCG 700 0.0 14.856831 31 AAGACGG 630 0.0 14.728199 5 >>END_MODULE