Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062867_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1445988 |
Sequences flagged as poor quality | 0 |
Sequence length | 38 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT | 7368 | 0.5095477970771541 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT | 5414 | 0.3744152786883432 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT | 3079 | 0.21293399391972825 | No Hit |
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA | 3065 | 0.2119657977797879 | No Hit |
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTAC | 2339 | 0.16175791223716934 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2146 | 0.14841063687942085 | No Hit |
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA | 1917 | 0.13257371430468304 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA | 1636 | 0.11314063463873836 | No Hit |
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG | 1633 | 0.11293316403732256 | No Hit |
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG | 1549 | 0.10712398719768075 | No Hit |
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC | 1474 | 0.10193722216228628 | No Hit |
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG | 1447 | 0.10006998674954426 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTAGCG | 375 | 0.0 | 18.346012 | 28 |
AGTGTCG | 45 | 0.008851402 | 17.77776 | 10 |
CTAGCGG | 380 | 0.0 | 17.68358 | 29 |
TAGATCG | 55 | 0.0013667853 | 17.450905 | 5 |
CATCGTT | 335 | 0.0 | 17.193417 | 28 |
TAGCGGC | 400 | 0.0 | 16.7994 | 30 |
CAAGACG | 390 | 0.0 | 16.405699 | 4 |
CGAGCCG | 370 | 0.0 | 16.00109 | 15 |
AAGACGG | 410 | 0.0 | 15.996663 | 5 |
CGGCATC | 345 | 0.0 | 15.767552 | 25 |
TCGTTTA | 380 | 0.0 | 15.578392 | 30 |
CGTTTAT | 395 | 0.0 | 15.391855 | 31 |
AGGCCCG | 375 | 0.0 | 15.3599825 | 10 |
GGCATCG | 355 | 0.0 | 15.323397 | 26 |
ATCGTTT | 390 | 0.0 | 15.1789465 | 29 |
GTATTAG | 285 | 0.0 | 15.171522 | 1 |
AGCGGCG | 480 | 0.0 | 14.999465 | 31 |
GCATCGT | 385 | 0.0 | 14.959988 | 27 |
ACCGTCG | 300 | 0.0 | 14.932284 | 8 |
TTCGCGT | 65 | 0.0041632564 | 14.768704 | 31 |