##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062860_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1762014 Sequences flagged as poor quality 0 Sequence length 38 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.201663550913896 32.0 32.0 32.0 32.0 32.0 2 31.266764622755552 32.0 32.0 32.0 32.0 32.0 3 31.358671383995812 32.0 32.0 32.0 32.0 32.0 4 31.459382842588084 32.0 32.0 32.0 32.0 32.0 5 31.376898253929877 32.0 32.0 32.0 32.0 32.0 6 34.89852975061492 36.0 36.0 36.0 36.0 36.0 7 34.93216455714881 36.0 36.0 36.0 36.0 36.0 8 34.86311289240608 36.0 36.0 36.0 32.0 36.0 9 34.9727766067693 36.0 36.0 36.0 36.0 36.0 10 34.8171257436093 36.0 36.0 36.0 32.0 36.0 11 34.990487022237055 36.0 36.0 36.0 36.0 36.0 12 34.89657289896675 36.0 36.0 36.0 32.0 36.0 13 34.94937497658929 36.0 36.0 36.0 36.0 36.0 14 34.890939572557315 36.0 36.0 36.0 32.0 36.0 15 34.864534561019376 36.0 36.0 36.0 32.0 36.0 16 34.87714342791828 36.0 36.0 36.0 32.0 36.0 17 34.835937171895345 36.0 36.0 36.0 32.0 36.0 18 34.84596830672174 36.0 36.0 36.0 32.0 36.0 19 34.83589120177252 36.0 36.0 36.0 32.0 36.0 20 34.82414782175397 36.0 36.0 36.0 32.0 36.0 21 34.81670917484197 36.0 36.0 36.0 32.0 36.0 22 34.80352312751204 36.0 36.0 36.0 32.0 36.0 23 34.743323832841284 36.0 36.0 36.0 32.0 36.0 24 34.72172809069622 36.0 36.0 36.0 32.0 36.0 25 34.705313919185656 36.0 36.0 36.0 32.0 36.0 26 34.63495749750002 36.0 36.0 36.0 32.0 36.0 27 34.62886049713566 36.0 36.0 36.0 32.0 36.0 28 34.60006163401653 36.0 36.0 36.0 32.0 36.0 29 34.56319132538107 36.0 36.0 36.0 32.0 36.0 30 34.53742932803031 36.0 36.0 36.0 32.0 36.0 31 34.53529937900607 36.0 36.0 36.0 32.0 36.0 32 34.50852206622649 36.0 36.0 36.0 32.0 36.0 33 34.47776805405633 36.0 36.0 36.0 32.0 36.0 34 34.46975449684282 36.0 36.0 36.0 32.0 36.0 35 34.43356465953165 36.0 36.0 36.0 32.0 36.0 36 34.40986677744899 36.0 36.0 36.0 32.0 36.0 37 34.40716532331752 36.0 36.0 36.0 32.0 36.0 38 33.967778349093706 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 1.0 19 3.0 20 8.0 21 40.0 22 160.0 23 422.0 24 1190.0 25 2912.0 26 6316.0 27 11946.0 28 20776.0 29 32652.0 30 49269.0 31 71141.0 32 103093.0 33 165206.0 34 402897.0 35 893982.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.14598565832207 18.178423005713288 11.914354051234548 26.7612372847301 2 16.11962220504491 20.30034948643995 36.27689677834569 27.303131530169455 3 17.94440906825939 24.087833581344984 28.560840038728408 29.40691731166722 4 12.068526168649154 15.766739518947931 35.6756732214802 36.48906109092272 5 14.394226600045856 36.78675287114957 32.98797057000747 15.831049958797102 6 35.04100430758055 35.53368028558294 16.1356632482222 13.28965215861431 7 30.684938970301545 30.314850474826777 20.432335552956253 18.567875001915425 8 28.626164537888098 32.63021683177589 18.864960427704297 19.878658202631723 9 27.40637530470415 13.76113464872826 18.22912616951057 40.60336387705702 10 15.773663247434442 26.535277645667353 31.10827846178818 26.582780645110027 11 38.33985364904034 20.7980571294303 21.612164848867348 19.249924372662008 12 24.816317311064775 23.536582735813614 28.26165177644117 23.38544817668044 13 29.64147215880037 19.046362366636757 25.086108997049394 26.226056477513477 14 23.793341029072415 19.37544196584136 24.70337920130033 32.127837803785894 15 25.37482676074083 26.997118070571517 21.949995857013622 25.67805931167403 16 26.22010948834686 25.563701536991196 23.199134626626122 25.017054348035828 17 24.366094707533538 25.816196693102324 24.64855557333824 25.1691530260259 18 25.382942473782844 24.388568989803712 25.77720721855786 24.451281317855592 19 25.774142543702833 24.725739977094392 25.095771089219493 24.40434638998328 20 26.09144989767391 23.844929722465317 24.55536675645029 25.508253623410482 21 27.317294093343293 23.93530804557517 24.13893889485429 24.608458966227246 22 26.16520205310747 23.865898756648647 24.8104439697346 25.15845522050928 23 24.516007836496005 23.661700374344782 25.445002644703894 26.377289144455318 24 25.06977810618985 24.672618946273982 24.94015371046995 25.31744923706622 25 25.12370794086082 24.262931090746775 25.03630790465224 25.577053063740163 26 25.143500562424588 25.06977810618985 25.352182218756493 24.43453911262907 27 25.786033239274193 24.238370680789913 24.51873199501479 25.4568640849211 28 24.72874789871136 24.333404842413284 25.52806050349203 25.40978675538333 29 24.764729451638864 24.55746662625836 25.437709348506882 25.240094573595893 30 24.649577131623246 24.772618151728647 25.625959839138623 24.951844877509487 31 25.435098699556303 24.588283634522767 24.40678677921969 25.56983088670124 32 25.105702905879294 24.511496503433 24.427161191681794 25.955639399005907 33 24.58317584309773 24.080625920111874 25.18203601106461 26.15416222572579 34 25.580670755169937 24.178127983092075 25.286234956135424 24.954966305602568 35 26.115059244705208 24.10588111104679 25.125680045675008 24.653379598572997 36 24.806613341324187 24.938224100376047 24.766659061732767 25.488503496566995 37 26.039350425138508 24.6709163491323 24.521882345997252 24.76785087973194 38 24.948695014562897 24.329800251076612 25.20970345264391 25.511801281716583 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 23.0 1 50.0 2 77.0 3 77.0 4 325.5 5 574.0 6 574.0 7 814.0 8 1054.0 9 1101.0 10 1148.0 11 1148.0 12 1538.5 13 1929.0 14 2721.5 15 3514.0 16 3514.0 17 5276.0 18 7038.0 19 7038.0 20 8494.5 21 9951.0 22 10508.5 23 11066.0 24 11066.0 25 13101.5 26 15137.0 27 15137.0 28 19564.0 29 23991.0 30 29798.0 31 35605.0 32 35605.0 33 46262.0 34 56919.0 35 56919.0 36 64147.0 37 71375.0 38 82325.5 39 93276.0 40 93276.0 41 100136.0 42 106996.0 43 122720.0 44 138444.0 45 138444.0 46 141726.0 47 145008.0 48 145008.0 49 154627.5 50 164247.0 51 166685.5 52 169124.0 53 169124.0 54 161598.0 55 154072.0 56 154072.0 57 149646.0 58 145220.0 59 130248.0 60 115276.0 61 115276.0 62 109292.0 63 103308.0 64 86096.5 65 68885.0 66 68885.0 67 57745.5 68 46606.0 69 46606.0 70 37750.0 71 28894.0 72 22720.5 73 16547.0 74 16547.0 75 12595.0 76 8643.0 77 8643.0 78 8141.5 79 7640.0 80 6111.5 81 4583.0 82 4583.0 83 4194.0 84 3805.0 85 3805.0 86 2454.5 87 1104.0 88 917.5 89 731.0 90 731.0 91 431.0 92 131.0 93 88.5 94 46.0 95 46.0 96 28.5 97 11.0 98 11.0 99 13.5 100 16.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008853505136735577 2 0.0 3 0.0 4 5.675323805599728E-5 5 1.1350647611199456E-4 6 2.2701295222398913E-4 7 1.7025971416799186E-4 8 0.002780908664743867 9 0.00334844104530384 10 0.0011350647611199458 11 0.004824025234759769 12 4.5402590444797825E-4 13 1.7025971416799186E-4 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 1.1350647611199456E-4 22 1.1350647611199456E-4 23 1.1350647611199456E-4 24 0.0 25 5.675323805599728E-5 26 0.0 27 1.1350647611199456E-4 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 1.1350647611199456E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 1762014.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.394912852863285 #Duplication Level Percentage of deduplicated Percentage of total 1 76.69217386074142 40.18279765930187 2 14.168069773019615 14.846695621012984 3 4.307795208820688 6.771196636624258 4 1.769816874486669 3.7091760361702355 5 0.8997308786600403 2.3570660489211464 6 0.5056756477008918 1.589689889586205 7 0.31471548363545154 1.1542643236968342 8 0.23344176294552635 0.9784928660599699 9 0.1621930203154762 0.7648280248294854 >10 0.7891345697773096 7.383864630169594 >50 0.06711202751739452 2.4857477474073724 >100 0.07150284300822785 8.293301802173678 >500 0.01318832733292838 4.827985837310454 >1k 0.005449722038400157 4.65489287673597 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 4456 0.2528924287775239 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT 3128 0.1775241286391595 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 2572 0.145969328280025 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 2395 0.1359240051441135 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 2285 0.1296811489579538 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 2268 0.12871634391100184 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 2216 0.12576517553209 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 2213 0.12559491581792198 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATG 2157 0.12241673448678614 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 2037 0.11560634592006647 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 1969 0.11174712573225865 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT 1909 0.10834193144889882 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCG 1831 0.10391517888053102 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGG 1807 0.1025531011671871 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGC 1789 0.10153154288217914 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 5.675323805599728E-5 7 0.0 0.0 0.0 0.0 5.675323805599728E-5 8 0.0 0.0 0.0 0.0 5.675323805599728E-5 9 0.0 0.0 0.0 0.0 5.675323805599728E-5 10 0.0 0.0 5.675323805599728E-5 0.0 5.675323805599728E-5 11 0.0 0.0 5.675323805599728E-5 5.675323805599728E-5 5.675323805599728E-5 12 0.0 0.0 5.675323805599728E-5 5.675323805599728E-5 2.2701295222398913E-4 13 0.0 0.0 5.675323805599728E-5 5.675323805599728E-5 2.2701295222398913E-4 14 0.0 0.0 5.675323805599728E-5 5.675323805599728E-5 2.2701295222398913E-4 15 0.0 0.0 5.675323805599728E-5 1.1350647611199456E-4 3.405194283359837E-4 16 0.0 0.0 5.675323805599728E-5 1.1350647611199456E-4 3.97272666391981E-4 17 0.0 0.0 5.675323805599728E-5 1.1350647611199456E-4 3.97272666391981E-4 18 0.0 0.0 5.675323805599728E-5 1.1350647611199456E-4 4.5402590444797825E-4 19 0.0 0.0 5.675323805599728E-5 1.7025971416799186E-4 4.5402590444797825E-4 20 0.0 0.0 5.675323805599728E-5 1.7025971416799186E-4 5.107791425039756E-4 21 0.0 0.0 5.675323805599728E-5 1.7025971416799186E-4 5.107791425039756E-4 22 0.0 0.0 5.675323805599728E-5 3.405194283359837E-4 5.107791425039756E-4 23 0.0 0.0 1.7025971416799186E-4 9.648050469519538E-4 6.810388566719674E-4 24 0.0 0.0 1.7025971416799186E-4 0.0014755841894559295 6.810388566719674E-4 25 0.0 0.0 1.7025971416799186E-4 0.001816103617791913 6.810388566719674E-4 26 0.0 0.0 1.7025971416799186E-4 0.002383635998351886 6.810388566719674E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGTAA 250 0.0 18.560972 10 TCGCGTA 255 0.0 18.197548 9 CTAGCGG 475 0.0 18.188877 29 TCTAGCG 480 0.0 17.999409 28 GCGTAAC 270 0.0 17.778708 11 CAAGACG 515 0.0 17.709162 4 TAGCGGC 490 0.0 17.632074 30 ATCGTTT 405 0.0 16.592049 29 CGGTCCA 570 0.0 16.562271 10 AAGACGG 580 0.0 16.55353 5 ACCGTCC 120 3.1088348E-8 16.001745 8 CGCAAGA 540 0.0 15.703634 2 GTATAGG 195 0.0 15.590117 1 GTATCAA 3025 0.0 15.497892 1 AGCGGCG 620 0.0 15.483362 31 CATCGTT 435 0.0 15.447769 28 TAATACT 270 0.0 15.407777 4 CGTTTAT 445 0.0 15.100628 31 CGCCGGT 610 0.0 14.952452 7 CCCCTAT 75 6.245558E-4 14.933691 1 >>END_MODULE