##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062835_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1823543 Sequences flagged as poor quality 0 Sequence length 38 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.204352186924027 32.0 32.0 32.0 32.0 32.0 2 30.78874202582555 32.0 32.0 32.0 32.0 32.0 3 30.838110206340076 32.0 32.0 32.0 32.0 32.0 4 30.915324179358535 32.0 32.0 32.0 32.0 32.0 5 30.82480259582582 32.0 32.0 32.0 32.0 32.0 6 34.47608200080832 36.0 36.0 36.0 32.0 36.0 7 34.39506005616539 36.0 36.0 36.0 32.0 36.0 8 34.37387273017417 36.0 36.0 36.0 32.0 36.0 9 34.51780572215736 36.0 36.0 36.0 32.0 36.0 10 34.21538236279594 36.0 36.0 36.0 32.0 36.0 11 34.51653292519014 36.0 36.0 36.0 32.0 36.0 12 34.320919221537416 36.0 36.0 36.0 32.0 36.0 13 34.42170543825948 36.0 36.0 36.0 32.0 36.0 14 34.30943443614985 36.0 36.0 36.0 32.0 36.0 15 34.24943475421199 36.0 36.0 36.0 32.0 36.0 16 34.26573214889915 36.0 36.0 36.0 32.0 36.0 17 34.18854559503121 36.0 36.0 36.0 32.0 36.0 18 34.223143079159634 36.0 36.0 36.0 32.0 36.0 19 34.20256884537409 36.0 36.0 36.0 32.0 36.0 20 34.179852079166764 36.0 36.0 36.0 32.0 36.0 21 34.162278597214325 36.0 36.0 36.0 32.0 36.0 22 34.14296783788482 36.0 36.0 36.0 32.0 36.0 23 34.099891255649034 36.0 36.0 36.0 32.0 36.0 24 34.07884815438956 36.0 36.0 36.0 32.0 36.0 25 34.066938372168906 36.0 36.0 36.0 32.0 36.0 26 34.01210171627431 36.0 36.0 36.0 32.0 36.0 27 34.03038645099129 36.0 36.0 36.0 32.0 36.0 28 34.01094243459025 36.0 36.0 36.0 32.0 36.0 29 33.97249310819652 36.0 36.0 36.0 32.0 36.0 30 33.94599962819632 36.0 36.0 36.0 32.0 36.0 31 33.96584999640809 36.0 36.0 36.0 32.0 36.0 32 33.92563871540183 36.0 36.0 36.0 32.0 36.0 33 33.87371890873975 36.0 36.0 36.0 32.0 36.0 34 33.886446878411974 36.0 36.0 36.0 32.0 36.0 35 33.8471179456695 36.0 36.0 36.0 32.0 36.0 36 33.813385809931546 36.0 36.0 36.0 32.0 36.0 37 33.80817452618337 36.0 36.0 36.0 32.0 36.0 38 33.219457396946495 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 5 1.0 6 0.0 7 3.0 8 3.0 9 3.0 10 17.0 11 22.0 12 11.0 13 12.0 14 157.0 15 390.0 16 511.0 17 681.0 18 787.0 19 1162.0 20 1537.0 21 2420.0 22 3744.0 23 5635.0 24 8783.0 25 13142.0 26 19386.0 27 27264.0 28 37769.0 29 51084.0 30 66855.0 31 89480.0 32 120663.0 33 178865.0 34 394163.0 35 798993.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.41803816494217 17.532977727508573 11.462605110072174 25.586378997477084 2 16.708878956441964 19.464273368837016 38.00894798121736 25.81789969350366 3 19.16396467150466 23.56637036127028 28.564001088110636 28.705663879114418 4 12.268521565169323 15.449060486011485 36.551985855740845 35.73043209307835 5 14.432696842405432 36.64778398060914 33.81263915241782 15.106880024567598 6 34.018157041131644 36.204405180048646 16.74818415879048 13.02925362002923 7 30.320151485322803 30.568952857157743 20.555588763193413 18.555306894326044 8 27.994331894554374 33.2738518604229 19.205149114056912 19.526667130965812 9 27.30821770195208 14.193006017419973 18.743936927041318 39.754839353586625 10 15.878089735448341 26.484943006397454 31.62495105668212 26.012016201472083 11 37.61631452412498 21.33414568873992 22.30963025033123 18.739909536803868 12 24.840141530956057 23.964895847957322 28.793828092096025 22.401134528990593 13 29.296308748574667 19.630090546752324 25.459109714099547 25.61449099057346 14 23.443409471827586 20.18269728586597 25.28562904202389 31.088264200282556 15 25.152270119292886 27.665495020503805 22.453370018583975 24.72886484161933 16 25.55930816464874 25.95260085426397 24.122097882767957 24.365993098319333 17 23.770431108105306 26.13920277060608 25.322205273432253 24.768160847856365 18 24.528072171874356 25.197142739624606 26.57126012860414 23.703524959896896 19 25.277381233776815 24.943388507030576 25.799868706307414 23.979361552885198 20 25.508574499706597 24.644653208513624 25.228443098994752 24.618329192785026 21 27.081502979569137 24.217211851588612 24.653096547253565 24.048188621588686 22 25.704523704408533 24.557048801822972 25.390768319535812 24.347659174232682 23 24.40795463270701 24.47853938376825 25.934164774534647 25.179341208990095 24 24.739601472744198 25.258945089106728 25.596910593809014 24.404542844340067 25 24.81045803255904 24.782266013094482 25.707611461317427 24.699664493029058 26 24.15837109284369 25.9417572008177 26.223301178557463 23.676570527781145 27 24.905504331554205 25.11188111644192 25.449773056833415 24.532841495170466 28 24.142055513022726 25.267463261505252 26.148989705104892 24.441491520367133 29 24.115972360476512 25.129831061941033 26.036523264289368 24.717673313293087 30 24.010972408297746 25.504487840029217 26.160265820959122 24.324273930713915 31 24.84173995830918 25.38067140756698 24.994035942290953 24.783552691832888 32 24.300893167591497 25.467451428596497 24.983958521397962 25.247696882414044 33 24.142806451595213 25.076301317949305 25.600552385893536 25.180339844561946 34 24.886730166878646 25.121195019363228 25.955835048628835 24.03623976512929 35 25.32443777009057 25.075374431435183 25.748355529277422 23.851832269196827 36 23.991369206121632 25.66849436634473 25.326630244306976 25.013506183226664 37 25.158472043217156 25.549839580991033 24.99887569583459 24.292812679957223 38 24.184077563839956 25.410504506075647 25.557919236690037 24.847498693394364 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 57.0 1 103.0 2 149.0 3 149.0 4 361.0 5 573.0 6 573.0 7 822.0 8 1071.0 9 1232.5 10 1394.0 11 1394.0 12 1940.5 13 2487.0 14 3470.5 15 4454.0 16 4454.0 17 6511.0 18 8568.0 19 8568.0 20 10452.5 21 12337.0 22 13808.0 23 15279.0 24 15279.0 25 18946.0 26 22613.0 27 22613.0 28 28789.5 29 34966.0 30 42086.0 31 49206.0 32 49206.0 33 60816.5 34 72427.0 35 72427.0 36 79025.0 37 85623.0 38 96542.0 39 107461.0 40 107461.0 41 112272.0 42 117083.0 43 130554.0 44 144025.0 45 144025.0 46 144110.0 47 144195.0 48 144195.0 49 152125.5 50 160056.0 51 162304.0 52 164552.0 53 164552.0 54 157367.5 55 150183.0 56 150183.0 57 143987.5 58 137792.0 59 123180.0 60 108568.0 61 108568.0 62 102622.5 63 96677.0 64 81203.0 65 65729.0 66 65729.0 67 55605.5 68 45482.0 69 45482.0 70 36534.0 71 27586.0 72 21399.0 73 15212.0 74 15212.0 75 11911.0 76 8610.0 77 8610.0 78 7882.5 79 7155.0 80 5648.0 81 4141.0 82 4141.0 83 3894.0 84 3647.0 85 3647.0 86 2518.0 87 1389.0 88 1162.5 89 936.0 90 936.0 91 677.0 92 418.0 93 366.5 94 315.0 95 315.0 96 294.5 97 274.0 98 274.0 99 563.5 100 853.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.1227281177356388 2 0.05533184575302035 3 0.010912821907681914 4 0.0025774001490505025 5 1.645149031308831E-4 6 4.387064083490216E-4 7 0.0 8 3.290298062617662E-4 9 2.193532041745108E-4 10 2.741915052181385E-4 11 0.0021386937407014807 12 0.003016106557399524 13 0.015683754098477522 14 0.010912821907681914 15 0.025609486587374143 16 0.012009587928554468 17 0.022154673621625594 18 0.00647091952314807 19 0.008225745156544156 20 0.006196728017929931 21 0.006854787630453464 22 0.008116068554456901 23 0.011132175111856425 24 0.015354724292215757 25 0.0182063159464844 26 0.020948230998665787 27 0.00981605588680936 28 0.006306404620017187 29 0.011625719821249074 30 0.0032902980626176625 31 0.006580596125235325 32 0.007951553651326018 33 0.009870894187852986 34 0.013270868852557904 35 0.017109549925611846 36 0.016670843517262824 37 0.010583792101420148 38 0.006361242921060814 >>END_MODULE >>Sequence Length Distribution pass #Length Count 38 1823543.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 49.28825006808731 #Duplication Level Percentage of deduplicated Percentage of total 1 73.29884590005031 36.12771846423876 2 14.934886149841182 14.722288065835718 3 5.412585352017164 8.003305810352652 4 2.461408733448704 4.852741166959752 5 1.2602139523577154 3.1056870211549876 6 0.6846165917483064 2.02461322649113 7 0.44281436717153405 1.5277881684024683 8 0.2860927973304572 1.1280810670001755 9 0.18656332892077115 0.8275842008443615 >10 0.8494030396943482 7.298963502598712 >50 0.07879284818478946 2.773887737766793 >100 0.08577319824027788 9.2982243541925 >500 0.012524341561368519 4.089411106834655 >1k 0.005367574954872222 3.935416085101731 >5k 1.1182447822650461E-4 0.28429002222563415 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT 5158 0.2828559567830317 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT 3409 0.18694376825772685 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT 2368 0.12985709687131042 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGC 2221 0.12179586661789715 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGT 2189 0.12004104098450104 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCG 2016 0.11055401490395345 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTG 1913 0.1049056698964598 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAAC 1864 0.10221859314532204 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT 1843 0.10106698882340587 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTA 1839 0.10084763561923137 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGAC 1825 0.10007989940462056 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 5.483830104362771E-5 2 0.0 0.0 0.0 0.0 5.483830104362771E-5 3 0.0 0.0 0.0 0.0 5.483830104362771E-5 4 0.0 0.0 0.0 0.0 5.483830104362771E-5 5 0.0 0.0 0.0 0.0 5.483830104362771E-5 6 0.0 0.0 0.0 0.0 5.483830104362771E-5 7 0.0 0.0 0.0 5.483830104362771E-5 5.483830104362771E-5 8 0.0 0.0 0.0 5.483830104362771E-5 5.483830104362771E-5 9 0.0 0.0 0.0 1.0967660208725542E-4 5.483830104362771E-5 10 0.0 0.0 0.0 1.0967660208725542E-4 5.483830104362771E-5 11 0.0 0.0 0.0 1.0967660208725542E-4 5.483830104362771E-5 12 0.0 0.0 0.0 1.0967660208725542E-4 1.0967660208725542E-4 13 0.0 0.0 0.0 1.0967660208725542E-4 1.0967660208725542E-4 14 0.0 0.0 0.0 1.0967660208725542E-4 1.0967660208725542E-4 15 0.0 0.0 0.0 1.0967660208725542E-4 1.0967660208725542E-4 16 0.0 0.0 0.0 1.0967660208725542E-4 1.0967660208725542E-4 17 0.0 0.0 5.483830104362771E-5 1.645149031308831E-4 1.0967660208725542E-4 18 0.0 0.0 5.483830104362771E-5 1.645149031308831E-4 1.0967660208725542E-4 19 0.0 0.0 5.483830104362771E-5 2.1935320417451083E-4 1.0967660208725542E-4 20 0.0 0.0 5.483830104362771E-5 2.7419150521813856E-4 1.0967660208725542E-4 21 0.0 0.0 5.483830104362771E-5 2.7419150521813856E-4 2.1935320417451083E-4 22 0.0 0.0 5.483830104362771E-5 3.8386810730539395E-4 3.290298062617662E-4 23 0.0 0.0 5.483830104362771E-5 8.774128166980433E-4 3.290298062617662E-4 24 0.0 0.0 5.483830104362771E-5 0.0017548256333960867 3.290298062617662E-4 25 0.0 0.0 5.483830104362771E-5 0.0021386937407014807 3.290298062617662E-4 26 0.0 0.0 5.483830104362771E-5 0.0025225618480068743 3.290298062617662E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACACCG 75 3.2388707E-5 17.064518 5 TCTAGCG 400 0.0 16.399284 28 GATATAC 420 0.0 16.01863 1 TAGCGGC 410 0.0 15.9993 30 CTAGCGG 410 0.0 15.9993 29 AACCGCG 250 0.0 15.998423 7 ATAGCGT 365 0.0 15.778834 6 GTATTAG 445 0.0 15.478676 1 ATAAGGC 135 7.932613E-9 15.405467 3 GTCCTAA 325 0.0 15.279307 1 AATAGCG 370 0.0 15.133228 5 GTATCAA 3755 0.0 14.930812 1 TAGCGTA 365 0.0 14.902641 7 TAGGACG 395 0.0 14.580041 4 CGTATAT 375 0.0 14.506431 10 GTAGGAC 720 0.0 14.22043 3 AGCGTAT 385 0.0 14.128477 8 ACCCGTT 170 7.6033757E-10 14.117031 30 CAAGACG 580 0.0 14.066807 4 TTTTCGG 480 0.0 13.999388 29 >>END_MODULE