##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062716_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 796137 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.180943732046117 32.0 32.0 32.0 32.0 32.0 2 31.30831000192178 32.0 32.0 32.0 32.0 32.0 3 31.44626490164381 32.0 32.0 32.0 32.0 32.0 4 31.580783206910368 32.0 32.0 32.0 32.0 32.0 5 31.484378944829846 32.0 32.0 32.0 32.0 32.0 6 35.087955967377475 36.0 36.0 36.0 36.0 36.0 7 35.09217383440287 36.0 36.0 36.0 36.0 36.0 8 35.03345780939713 36.0 36.0 36.0 36.0 36.0 9 35.18026168862897 36.0 36.0 36.0 36.0 36.0 10 35.039157833387975 36.0 36.0 36.0 36.0 36.0 11 35.187011783147874 36.0 36.0 36.0 36.0 36.0 12 35.083641383329756 36.0 36.0 36.0 36.0 36.0 13 35.13756175130662 36.0 36.0 36.0 36.0 36.0 14 35.09511051489882 36.0 36.0 36.0 36.0 36.0 15 35.05118717004736 36.0 36.0 36.0 36.0 36.0 16 35.05636215877418 36.0 36.0 36.0 36.0 36.0 17 35.02815721414782 36.0 36.0 36.0 36.0 36.0 18 35.04845774031354 36.0 36.0 36.0 36.0 36.0 19 35.02084440240813 36.0 36.0 36.0 36.0 36.0 20 35.01534534885327 36.0 36.0 36.0 36.0 36.0 21 35.00071093291732 36.0 36.0 36.0 36.0 36.0 22 34.978905640612105 36.0 36.0 36.0 36.0 36.0 23 34.92066315219617 36.0 36.0 36.0 32.0 36.0 24 34.89939043154633 36.0 36.0 36.0 32.0 36.0 25 34.85858087238754 36.0 36.0 36.0 32.0 36.0 26 34.816084417631636 36.0 36.0 36.0 32.0 36.0 27 34.79635037688237 36.0 36.0 36.0 32.0 36.0 28 34.76829867221345 36.0 36.0 36.0 32.0 36.0 29 34.734222878725646 36.0 36.0 36.0 32.0 36.0 30 34.718030941910754 36.0 36.0 36.0 32.0 36.0 31 34.70225853088099 36.0 36.0 36.0 32.0 36.0 32 34.66681488236321 36.0 36.0 36.0 32.0 36.0 33 34.64002049898447 36.0 36.0 36.0 32.0 36.0 34 34.6167933408446 36.0 36.0 36.0 32.0 36.0 35 34.57713433743187 36.0 36.0 36.0 32.0 36.0 36 34.54805265927849 36.0 36.0 36.0 32.0 36.0 37 34.51613604191238 36.0 36.0 36.0 32.0 36.0 38 34.46781772483882 36.0 36.0 36.0 32.0 36.0 39 34.416022619222574 36.0 36.0 36.0 32.0 36.0 40 34.38061539659631 36.0 36.0 36.0 32.0 36.0 41 34.349290385951164 36.0 36.0 36.0 32.0 36.0 42 34.2776481937154 36.0 36.0 36.0 32.0 36.0 43 34.29787712416331 36.0 36.0 36.0 32.0 36.0 44 34.267045747151556 36.0 36.0 36.0 32.0 36.0 45 34.16942310180283 36.0 36.0 36.0 32.0 36.0 46 34.2302694134301 36.0 36.0 36.0 32.0 36.0 47 34.16692730020085 36.0 36.0 36.0 32.0 36.0 48 34.15041506675359 36.0 36.0 36.0 32.0 36.0 49 34.16399690003102 36.0 36.0 36.0 32.0 36.0 50 33.60111262257627 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 0.0 19 1.0 20 7.0 21 16.0 22 71.0 23 241.0 24 568.0 25 1386.0 26 2993.0 27 5846.0 28 9484.0 29 13865.0 30 20049.0 31 28729.0 32 42990.0 33 68024.0 34 148644.0 35 453222.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.013818748272655 17.76952840380895 11.367427954071506 25.849224893846888 2 16.035111034627427 20.493202512740186 36.35408986023165 27.117596592400734 3 18.871924987596326 24.132339364555005 28.690360303214906 28.30537534463376 4 12.095280083704187 15.321609220523602 35.90726219231112 36.67584850346109 5 13.945212947017913 37.19359858918754 33.621725908983 15.239462554811547 6 34.9579720047831 35.1292995166655 16.398580142086278 13.514148336465126 7 30.24542258430396 30.707654587087397 20.642050300388 18.404872528220643 8 28.758869390569714 32.854395663057986 19.469764625937497 18.9169703204348 9 27.274074688150407 13.907405383746768 18.444438582806725 40.3740813452961 10 15.526347852191268 27.042205047623714 32.050639525609284 25.38080757457573 11 38.12861354264404 21.10063971401907 21.12852436201307 19.64222238132382 12 23.898525002606334 24.059678170968063 29.116094340546915 22.925702485878688 13 29.964189580436535 19.13075262172214 25.352169287446756 25.552888510394567 14 23.298502644645332 19.4864702934294 24.94269202411143 32.272335037813846 15 25.492094953506744 27.043461112848664 22.638817188498965 24.82562674514562 16 26.07754695485827 25.86125252312102 23.903926083073642 24.157274438947066 17 23.8185136477767 26.080310298353172 25.64998235228359 24.451193701586536 18 25.300293793656113 24.575920978424566 26.461400487604518 23.662384740314796 19 25.11037673164292 26.282913619138416 24.95763920028839 23.649070448930274 20 25.02132170719361 24.33689176611563 25.88612261457513 24.755663912115626 21 26.317078593257193 24.76935502306764 24.234020024191814 24.679546359483357 22 25.098820931573336 24.99506994399205 25.01692547890627 24.889183645528345 23 23.94864200508204 24.495030377937464 25.226813977996247 26.32951363898425 24 24.122732645260804 26.187955088131815 24.917947539179814 24.771364727427567 25 25.039409046432965 24.78744236230699 24.738204605488754 25.43494398577129 26 24.04912722307844 25.4988777057215 25.555777460411967 24.896217610788092 27 25.34739623959193 25.355811876599127 24.956131922018447 24.340659961790497 28 24.551930132627927 24.698764157425167 25.458809225045435 25.29049648490147 29 23.892998315616534 25.595217908475554 25.9790714412218 24.532712334686117 30 24.657565218046642 25.204832836559536 25.935611584438355 24.201990360955463 31 24.35950094016482 25.376913772378373 24.775760955714908 25.487824331741898 32 24.134916477942866 25.289366026199005 25.041418750792893 25.534298745065232 33 23.969115868248807 24.84157877350255 25.510182292746098 25.679123065502544 34 24.419415251395176 25.339859848242202 26.085585772297982 24.155139128064643 35 25.53304267984028 24.802891964573938 25.554395788664515 24.109669566921273 36 24.08065446022481 25.74205193327279 25.194658708237398 24.982634898264998 37 25.322274935092832 25.280573569624327 25.152580523201408 24.24457097208144 38 24.401830338245805 25.06201822048215 25.149440360139018 25.386711081133022 39 24.908903869560138 25.06729369442696 25.257210756440163 24.766591679572734 40 25.227190797563736 25.301549858881074 25.004490433179217 24.466768910375976 41 23.672810081681924 25.765791566024443 25.86816088185827 24.693237470435363 42 25.736022820193007 25.769559761699306 25.252563315107828 23.24185410299986 43 24.767973351320187 24.25424267431359 25.258592428187608 25.71919154617861 44 24.211662063187617 25.150445212318985 25.778729037841476 24.859163686651918 45 24.474430908248205 25.298786515386173 25.362343415768894 24.86443916059673 46 23.918646656584585 25.125230489416328 25.971446945983836 24.98467590801525 47 24.368042183694516 24.674270885538544 26.357147073933255 24.600539856833688 48 24.855269884454557 26.230661305780284 24.595515595933865 24.318553213831287 49 23.84790557404065 25.636040028286587 25.98296524341916 24.533089154253602 50 23.802465910346974 26.37049448837887 24.728438357265592 25.098601244008563 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 17.0 1 16.0 2 15.0 3 50.5 4 86.0 5 95.5 6 105.0 7 93.0 8 81.0 9 131.5 10 182.0 11 264.5 12 347.0 13 572.0 14 797.0 15 1082.5 16 1368.0 17 1636.0 18 1904.0 19 2260.0 20 2616.0 21 3154.0 22 3692.0 23 4203.5 24 4715.0 25 5270.0 26 5825.0 27 7055.5 28 8286.0 29 9540.5 30 10795.0 31 11791.0 32 12787.0 33 14614.5 34 16442.0 35 18956.5 36 21471.0 37 25282.5 38 29094.0 39 31800.0 40 34506.0 41 38606.0 42 42706.0 43 44359.5 44 46013.0 45 51591.5 46 57170.0 47 61205.5 48 65241.0 49 65617.5 50 65994.0 51 61332.5 52 56671.0 53 54473.0 54 52275.0 55 53370.5 56 54466.0 57 52399.5 58 50333.0 59 45491.5 60 40650.0 61 35599.0 62 30548.0 63 26752.5 64 22957.0 65 19914.5 66 16872.0 67 14508.0 68 12144.0 69 11204.0 70 10264.0 71 7928.0 72 5592.0 73 5137.0 74 4682.0 75 3301.5 76 1921.0 77 1764.0 78 1607.0 79 1404.0 80 1201.0 81 973.5 82 746.0 83 592.5 84 439.0 85 364.0 86 289.0 87 228.0 88 167.0 89 102.5 90 38.0 91 23.5 92 9.0 93 5.5 94 2.0 95 2.5 96 3.0 97 4.0 98 5.0 99 3.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014695963131973518 2 0.004270621764847005 3 2.512130449910003E-4 4 0.0 5 0.0 6 1.2560652249550016E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 6.280326124775007E-4 47 0.0 48 0.0 49 0.0 50 1.2560652249550016E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 796137.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 60.04584634985035 #Duplication Level Percentage of deduplicated Percentage of total 1 80.61149975461275 48.40385728296476 2 12.489616005666866 14.998991272898085 3 3.3777425154993295 6.084582242850892 4 1.2782564407958112 3.070159593589274 5 0.6254782944168963 1.8778686780861709 6 0.34516107856584555 1.2435293453708032 7 0.2113545034253633 0.8883672026619799 8 0.15003169033294042 0.7207023860272054 9 0.11412219316960191 0.6167307308552872 >10 0.6325991972901007 7.353971585444599 >50 0.08196504568439425 3.4701989418644774 >100 0.07651338622184506 8.841594239673704 >500 0.005031017171848539 1.9905324550453087 >1k 6.288771464810674E-4 0.43891404266744605 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1293 0.1624092335866817 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 1172 0.14721084436472617 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1022 0.12836986599040115 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 890 0.11178980502099511 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 880 0.11053373979604013 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 853 0.10714236368866163 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 803 0.10086203756388662 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 802 0.10073643104139111 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 0.0 0.0 0.0 0.0 1.2560652249550016E-4 11 0.0 0.0 0.0 1.2560652249550016E-4 1.2560652249550016E-4 12 0.0 0.0 0.0 1.2560652249550016E-4 2.512130449910003E-4 13 0.0 0.0 0.0 1.2560652249550016E-4 2.512130449910003E-4 14 0.0 0.0 0.0 1.2560652249550016E-4 2.512130449910003E-4 15 0.0 0.0 0.0 1.2560652249550016E-4 2.512130449910003E-4 16 1.2560652249550016E-4 0.0 0.0 1.2560652249550016E-4 2.512130449910003E-4 17 1.2560652249550016E-4 0.0 0.0 5.024260899820006E-4 2.512130449910003E-4 18 1.2560652249550016E-4 0.0 0.0 0.0010048521799640013 2.512130449910003E-4 19 1.2560652249550016E-4 0.0 0.0 0.0010048521799640013 2.512130449910003E-4 20 1.2560652249550016E-4 0.0 0.0 0.0012560652249550015 3.768195674865004E-4 21 1.2560652249550016E-4 0.0 0.0 0.0018840978374325022 3.768195674865004E-4 22 1.2560652249550016E-4 0.0 0.0 0.003265769584883004 3.768195674865004E-4 23 1.2560652249550016E-4 0.0 0.0 0.006531539169766008 3.768195674865004E-4 24 1.2560652249550016E-4 0.0 0.0 0.009922915277144511 3.768195674865004E-4 25 1.2560652249550016E-4 0.0 0.0 0.012686258772045515 3.768195674865004E-4 26 1.2560652249550016E-4 0.0 0.0 0.015575208789442019 3.768195674865004E-4 27 1.2560652249550016E-4 0.0 0.0 0.01909219141931602 3.768195674865004E-4 28 1.2560652249550016E-4 0.0 0.0 0.02662858276904603 3.768195674865004E-4 29 1.2560652249550016E-4 0.0 0.0 0.03931484154109154 3.768195674865004E-4 30 1.2560652249550016E-4 0.0 0.0 0.06493857213017358 3.768195674865004E-4 31 1.2560652249550016E-4 0.0 0.0 0.11065934631853563 3.768195674865004E-4 32 1.2560652249550016E-4 0.0 0.0 0.1681871336214747 3.768195674865004E-4 33 1.2560652249550016E-4 0.0 0.0 0.21654564478224225 3.768195674865004E-4 34 1.2560652249550016E-4 0.0 0.0 0.27960011907498333 3.768195674865004E-4 35 1.2560652249550016E-4 0.0 0.0 0.3594858673821214 3.768195674865004E-4 36 1.2560652249550016E-4 0.0 0.0 0.46172957669345854 3.768195674865004E-4 37 1.2560652249550016E-4 0.0 0.0 0.6109501254181127 3.768195674865004E-4 38 1.2560652249550016E-4 0.0 0.0 0.7839103068944164 5.024260899820006E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGAAAC 35 3.217045E-4 31.4283 28 CGCAATA 225 0.0 21.51093 36 TCTAGCG 245 0.0 20.652884 28 CCGGTCC 290 0.0 19.723969 9 CGGTCCA 260 0.0 19.461372 10 CTAGCGG 260 0.0 19.461372 29 TAGCGGC 265 0.0 19.094177 30 ATATATC 140 4.0727173E-9 18.858166 3 ATACGAA 280 0.0 18.856981 40 CGTCTAT 60 0.007399569 18.337784 1 CCCTATA 60 0.007407617 18.334328 2 AGTAAGG 60 0.007407617 18.334328 2 GATTGCG 60 0.0074103014 18.333176 12 CGAATGC 265 0.0 18.263994 43 GTCTAGG 135 5.5031705E-8 17.930279 1 GCGCAAT 270 0.0 17.925772 35 CAATACG 285 0.0 17.754232 38 CCCCTAT 75 0.0012882473 17.604273 1 GCATTAG 100 2.4761164E-5 17.604273 1 ATATACT 125 4.8477705E-7 17.59985 4 >>END_MODULE