##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062711_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1671492 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.223343575679692 32.0 32.0 32.0 32.0 32.0 2 31.325521749431047 32.0 32.0 32.0 32.0 32.0 3 31.431104067503764 32.0 32.0 32.0 32.0 32.0 4 31.546018168199428 32.0 32.0 32.0 32.0 32.0 5 31.457351874851927 32.0 32.0 32.0 32.0 32.0 6 35.03895920530879 36.0 36.0 36.0 36.0 36.0 7 35.044293960126645 36.0 36.0 36.0 36.0 36.0 8 34.99451866954792 36.0 36.0 36.0 36.0 36.0 9 35.122685002381104 36.0 36.0 36.0 36.0 36.0 10 34.98781806912626 36.0 36.0 36.0 36.0 36.0 11 35.13212088361775 36.0 36.0 36.0 36.0 36.0 12 35.022202319843586 36.0 36.0 36.0 36.0 36.0 13 35.076333598964275 36.0 36.0 36.0 36.0 36.0 14 35.035300797132145 36.0 36.0 36.0 36.0 36.0 15 34.992997872559364 36.0 36.0 36.0 36.0 36.0 16 35.00887231287975 36.0 36.0 36.0 36.0 36.0 17 34.98535081232815 36.0 36.0 36.0 36.0 36.0 18 35.001478918235925 36.0 36.0 36.0 36.0 36.0 19 34.97929634123286 36.0 36.0 36.0 36.0 36.0 20 34.95966118892582 36.0 36.0 36.0 36.0 36.0 21 34.948728441416414 36.0 36.0 36.0 32.0 36.0 22 34.935312283875724 36.0 36.0 36.0 32.0 36.0 23 34.89258279429396 36.0 36.0 36.0 32.0 36.0 24 34.87319711969905 36.0 36.0 36.0 32.0 36.0 25 34.840289992413965 36.0 36.0 36.0 32.0 36.0 26 34.80356651422801 36.0 36.0 36.0 32.0 36.0 27 34.78370342185305 36.0 36.0 36.0 32.0 36.0 28 34.76233389091901 36.0 36.0 36.0 32.0 36.0 29 34.740304470497016 36.0 36.0 36.0 32.0 36.0 30 34.72323887879811 36.0 36.0 36.0 32.0 36.0 31 34.714595104254165 36.0 36.0 36.0 32.0 36.0 32 34.67492695149004 36.0 36.0 36.0 32.0 36.0 33 34.64179667028021 36.0 36.0 36.0 32.0 36.0 34 34.62386717974121 36.0 36.0 36.0 32.0 36.0 35 34.59150148490092 36.0 36.0 36.0 32.0 36.0 36 34.56130690425081 36.0 36.0 36.0 32.0 36.0 37 34.54295084870284 36.0 36.0 36.0 32.0 36.0 38 34.49959377609944 36.0 36.0 36.0 32.0 36.0 39 34.47120476795581 36.0 36.0 36.0 32.0 36.0 40 34.444827734742375 36.0 36.0 36.0 32.0 36.0 41 34.413635841511656 36.0 36.0 36.0 32.0 36.0 42 34.36290930498022 36.0 36.0 36.0 32.0 36.0 43 34.355429759759545 36.0 36.0 36.0 32.0 36.0 44 34.3250335628289 36.0 36.0 36.0 32.0 36.0 45 34.24815613834826 36.0 36.0 36.0 32.0 36.0 46 34.27330133796632 36.0 36.0 36.0 32.0 36.0 47 34.22454968375559 36.0 36.0 36.0 32.0 36.0 48 34.188236019077564 36.0 36.0 36.0 32.0 36.0 49 34.17529608278113 36.0 36.0 36.0 32.0 36.0 50 33.58843476367222 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 18 2.0 19 2.0 20 7.0 21 39.0 22 139.0 23 403.0 24 1140.0 25 2793.0 26 5737.0 27 11049.0 28 18971.0 29 29612.0 30 43354.0 31 62730.0 32 92129.0 33 147830.0 34 311184.0 35 944371.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.5507245509627 18.284964116507364 11.716196696827868 26.44811463570207 2 16.03457167711882 21.260348947545392 36.50637240296609 26.1987069723697 3 18.658580434261072 24.75334777559808 28.84827425705197 27.73979753308888 4 12.445811690914551 16.298670763619917 36.384331068282954 34.87118647718258 5 14.179077243012376 36.745157467195455 33.627581602294 15.448183687498169 6 33.181432024313786 35.987986694426496 17.07869672386149 13.751884557398233 7 29.1601156332187 30.880076003953356 21.333814340720743 18.625994022107196 8 27.75400660009141 32.61882198658444 20.287443792731285 19.339727620592857 9 27.550715169441432 14.217238251813349 18.71896485295772 39.5130817257875 10 15.626936892309388 26.84422061248274 32.037485073216025 25.49135742199185 11 37.1660767745224 21.43324646483501 22.2436601551189 19.157016605523687 12 24.077470906232275 24.214474254139414 29.16352576021901 22.544529079409294 13 29.78398939390676 19.725012144838264 25.312834282186213 25.178164179068762 14 23.48811720307366 19.85848571216614 25.371823496612606 31.281573588147594 15 25.10625237811488 27.080895391662057 23.08859390293223 24.724258327290826 16 25.470238565305724 25.977450086509542 24.330418572149913 24.221892776034824 17 23.678486047196156 25.674846185324252 25.99252643745827 24.65414133002132 18 24.696618350551482 24.792281386928565 27.057862077712606 23.453238184807347 19 25.077714999533352 25.732579037171583 25.69177716674683 23.497928796548234 20 25.185522874174687 24.46951585768882 26.059472614885383 24.285488653251107 21 26.344607093542777 24.756804100767457 24.491711596585567 24.406877209104202 22 25.14878922543452 25.17343786269991 25.25994740028669 24.41782551157888 23 24.05934338902011 24.598203281858364 25.683760376956634 25.65869295216489 24 24.018661172174323 25.734672974803352 25.615916797687337 24.630749055334995 25 24.68088390491848 24.64636384738904 25.66880367958686 25.00394856810562 26 23.715877790620596 25.443137029671693 26.307753791223647 24.53323138848406 27 25.113252112483934 25.242298497390355 25.50822857662495 24.136220813500753 28 23.944116992483362 25.02823824463414 26.163451575000057 24.864193187882442 29 23.80184888710206 25.472751290463847 26.1195387115224 24.60586111091169 30 24.2795059743032 25.456119442988662 26.231594288216755 24.03278029449139 31 24.17433047839894 25.27412634939324 25.430633230670562 25.120909941537263 32 24.09308569828632 25.557226717208337 25.50786961588808 24.841817968617256 33 23.93364730432452 24.8084944468774 26.042362153094363 25.21549609570372 34 24.230627487298772 25.408018704247464 26.36961469154504 23.991739116908725 35 25.331560067293175 25.012324318632693 25.727733067223774 23.928382546850358 36 23.927186011060776 25.764765849911335 25.611788749213275 24.69625938981461 37 25.080407205059913 25.468383934831873 25.375831891507705 24.075376968600505 38 24.007593216120686 25.21065012575591 25.767577709016855 25.014178949106547 39 24.350101585888538 25.038468625635062 25.638351843741997 24.973077944734403 40 24.933173476151847 25.184386165174587 25.76907337875383 24.113366979919736 41 23.496971567916567 25.417351683406203 26.55555635324608 24.530120395431148 42 25.16619882117294 25.61950640505608 25.73413453369804 23.48016024007294 43 24.298590720147033 24.426799530000743 26.044216783568213 25.230392966284015 44 23.771038090520324 25.168472239173145 26.16249434636839 24.897995323938137 45 23.91438307811225 25.460486798620636 25.988817176510565 24.63631294675655 46 23.627601720620525 24.89473463795775 26.219959437388198 25.257704204033526 47 23.9205452374286 24.718455128711355 26.69190160646895 24.669098027391097 48 24.209149669875778 25.99539812335327 25.38313075982416 24.412321446946798 49 23.328977943059254 25.334970194293483 26.555855487193476 24.780196375453787 50 23.25610891347371 26.160400408736628 25.53790266420659 25.045588013583075 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 16.0 1 24.5 2 33.0 3 106.5 4 180.0 5 219.0 6 258.0 7 273.5 8 289.0 9 389.0 10 489.0 11 752.5 12 1016.0 13 1693.0 14 2370.0 15 3362.0 16 4354.0 17 5223.0 18 6092.0 19 6839.5 20 7587.0 21 8896.0 22 10205.0 23 10943.0 24 11681.0 25 13273.5 26 14866.0 27 18350.5 28 21835.0 29 24687.0 30 27539.0 31 29867.0 32 32195.0 33 36508.0 34 40821.0 35 46825.5 36 52830.0 37 61157.0 38 69484.0 39 73735.5 40 77987.0 41 84208.0 42 90429.0 43 92134.0 44 93839.0 45 103547.5 46 113256.0 47 120572.5 48 127889.0 49 126737.0 50 125585.0 51 117499.0 52 109413.0 53 105756.5 54 102100.0 55 102823.5 56 103547.0 57 101404.0 58 99261.0 59 90090.0 60 80919.0 61 71794.0 62 62669.0 63 55492.0 64 48315.0 65 41751.0 66 35187.0 67 32108.5 68 29030.0 69 26878.5 70 24727.0 71 19783.0 72 14839.0 73 12892.5 74 10946.0 75 8368.0 76 5790.0 77 5044.5 78 4299.0 79 3730.5 80 3162.0 81 2433.5 82 1705.0 83 1431.0 84 1157.0 85 945.5 86 734.0 87 555.5 88 377.0 89 245.5 90 114.0 91 76.0 92 38.0 93 30.0 94 22.0 95 15.5 96 9.0 97 7.0 98 5.0 99 3.5 100 2.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014956697369775026 2 0.003948568105620607 3 5.38441105311901E-4 4 3.5896073687460064E-4 5 5.9826789479100115E-5 6 7.179214737492013E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.1965357895820023E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1671492.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 56.35827497999094 #Duplication Level Percentage of deduplicated Percentage of total 1 80.31099711211826 45.26189259162019 2 12.519598690952474 14.11165971327668 3 3.383323760992854 5.7203487260511725 4 1.315541260358027 2.965665443951262 5 0.6118942444502853 1.7242652043701483 6 0.38228776514196494 1.2927047393614233 7 0.24469232712993486 0.9653306220517935 8 0.1735970322335226 0.7826903422661775 9 0.137742726033944 0.6986648187283115 >10 0.7354802776852739 7.773615711354682 >50 0.08893153820676503 3.473607129045464 >100 0.0851259811606407 9.997971561563244 >500 0.00801035906139128 2.9980494773218958 >1k 0.002776924474615644 2.2335339190376104 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 3046 0.18223240075333894 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 2709 0.16207077269888218 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 1776 0.10625237811488178 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 1746 0.10445757443050879 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1701 0.10176536890394929 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 5.982678947910011E-5 6 0.0 0.0 0.0 0.0 5.982678947910011E-5 7 0.0 0.0 0.0 0.0 5.982678947910011E-5 8 0.0 0.0 0.0 0.0 5.982678947910011E-5 9 0.0 0.0 0.0 0.0 5.982678947910011E-5 10 0.0 0.0 0.0 0.0 5.982678947910011E-5 11 0.0 0.0 0.0 0.0 5.982678947910011E-5 12 0.0 0.0 0.0 0.0 2.3930715791640043E-4 13 0.0 0.0 0.0 0.0 2.3930715791640043E-4 14 0.0 0.0 0.0 0.0 2.3930715791640043E-4 15 0.0 0.0 0.0 0.0 2.3930715791640043E-4 16 0.0 0.0 0.0 0.0 2.3930715791640043E-4 17 0.0 0.0 0.0 0.0 2.3930715791640043E-4 18 0.0 0.0 0.0 5.982678947910011E-5 2.3930715791640043E-4 19 0.0 0.0 0.0 5.982678947910011E-5 2.3930715791640043E-4 20 0.0 0.0 0.0 2.991339473955005E-4 2.3930715791640043E-4 21 0.0 0.0 0.0 5.38441105311901E-4 2.3930715791640043E-4 22 0.0 0.0 0.0 0.0010170554211447018 2.3930715791640043E-4 23 0.0 0.0 0.0 0.0017948036843730033 2.3930715791640043E-4 24 0.0 0.0 0.0 0.0029315126844759055 2.3930715791640043E-4 25 0.0 0.0 0.0 0.0035297805792669063 2.3930715791640043E-4 26 5.982678947910011E-5 0.0 0.0 0.0045468360004116085 2.3930715791640043E-4 27 5.982678947910011E-5 0.0 0.0 0.006580946842701012 2.3930715791640043E-4 28 5.982678947910011E-5 0.0 0.0 0.015674618843524227 2.3930715791640043E-4 29 5.982678947910011E-5 0.0 0.0 0.03541745937162726 2.3930715791640043E-4 30 5.982678947910011E-5 0.0 0.0 0.06898028826940243 2.3930715791640043E-4 31 5.982678947910011E-5 0.0 0.0 0.14490048411838047 2.3930715791640043E-4 32 5.982678947910011E-5 0.0 0.0 0.23236725033682482 2.3930715791640043E-4 33 5.982678947910011E-5 0.0 0.0 0.3185776539762081 2.3930715791640043E-4 34 5.982678947910011E-5 0.0 0.0 0.4223771337224468 2.3930715791640043E-4 35 5.982678947910011E-5 0.0 0.0 0.5357488997853415 2.3930715791640043E-4 36 5.982678947910011E-5 0.0 0.0 0.7012896262740115 2.3930715791640043E-4 37 5.982678947910011E-5 0.0 0.0 0.9417933199799939 2.3930715791640043E-4 38 5.982678947910011E-5 0.0 0.0 1.2442177407968449 2.3930715791640043E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGGACG 325 0.0 18.953808 4 TATAGCG 75 0.0012911683 17.599964 5 CGCAATA 545 0.0 17.357763 36 TCTAGCG 570 0.0 16.596457 28 CTAGCGG 570 0.0 16.596457 29 CGTTAGG 80 0.0019880119 16.500954 1 ATCGGCT 80 0.001988807 16.499966 35 CGAATGC 595 0.0 16.268875 43 ATACGAA 570 0.0 16.210493 40 TAGCGGC 585 0.0 16.170908 30 TAACGGC 250 0.0 15.839969 36 GTATTAG 480 0.0 15.584233 1 TTAACGG 240 3.6379788E-12 15.583301 35 TTAGCGG 85 0.00298062 15.52938 3 CGGTCCA 610 0.0 15.508164 10 CGTACTA 200 1.2769306E-9 15.399968 3 GTATAGT 145 2.2853546E-6 15.17329 1 GACGGCC 685 0.0 15.09486 11 CGAGCCG 570 0.0 15.0526 15 TAGTGCG 205 1.8117134E-9 15.02436 8 >>END_MODULE