##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062704_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 592255 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.217021384369907 32.0 32.0 32.0 32.0 32.0 2 31.356787194704985 32.0 32.0 32.0 32.0 32.0 3 31.45742290060869 32.0 32.0 32.0 32.0 32.0 4 31.569393251217804 32.0 32.0 32.0 32.0 32.0 5 31.495138073971514 32.0 32.0 32.0 32.0 32.0 6 35.0765312238816 36.0 36.0 36.0 36.0 36.0 7 35.09293631965961 36.0 36.0 36.0 36.0 36.0 8 35.02662873255608 36.0 36.0 36.0 36.0 36.0 9 35.157067479379656 36.0 36.0 36.0 36.0 36.0 10 35.0297557639868 36.0 36.0 36.0 36.0 36.0 11 35.16598593511241 36.0 36.0 36.0 36.0 36.0 12 35.06886729533731 36.0 36.0 36.0 36.0 36.0 13 35.109952638643826 36.0 36.0 36.0 36.0 36.0 14 35.08136697875071 36.0 36.0 36.0 36.0 36.0 15 35.03544756903698 36.0 36.0 36.0 36.0 36.0 16 35.053880507551646 36.0 36.0 36.0 36.0 36.0 17 35.03432643033828 36.0 36.0 36.0 36.0 36.0 18 35.0398916007463 36.0 36.0 36.0 36.0 36.0 19 35.01876050012241 36.0 36.0 36.0 36.0 36.0 20 35.00434610091937 36.0 36.0 36.0 36.0 36.0 21 34.984206127428216 36.0 36.0 36.0 36.0 36.0 22 34.967637250846344 36.0 36.0 36.0 32.0 36.0 23 34.926892976842744 36.0 36.0 36.0 32.0 36.0 24 34.91225063528379 36.0 36.0 36.0 32.0 36.0 25 34.88780001857308 36.0 36.0 36.0 32.0 36.0 26 34.83210103755984 36.0 36.0 36.0 32.0 36.0 27 34.82293606639032 36.0 36.0 36.0 32.0 36.0 28 34.80864830182945 36.0 36.0 36.0 32.0 36.0 29 34.78781437049919 36.0 36.0 36.0 32.0 36.0 30 34.77967091877654 36.0 36.0 36.0 32.0 36.0 31 34.7570522832226 36.0 36.0 36.0 32.0 36.0 32 34.72347384150408 36.0 36.0 36.0 32.0 36.0 33 34.68892284573368 36.0 36.0 36.0 32.0 36.0 34 34.66860896066728 36.0 36.0 36.0 32.0 36.0 35 34.63685068087226 36.0 36.0 36.0 32.0 36.0 36 34.6147014377253 36.0 36.0 36.0 32.0 36.0 37 34.59897172670556 36.0 36.0 36.0 32.0 36.0 38 34.55330558627618 36.0 36.0 36.0 32.0 36.0 39 34.533837620619494 36.0 36.0 36.0 32.0 36.0 40 34.49919713636862 36.0 36.0 36.0 32.0 36.0 41 34.480056732319696 36.0 36.0 36.0 32.0 36.0 42 34.432139872183434 36.0 36.0 36.0 32.0 36.0 43 34.42347468573503 36.0 36.0 36.0 32.0 36.0 44 34.388525212957255 36.0 36.0 36.0 32.0 36.0 45 34.30971794244034 36.0 36.0 36.0 32.0 36.0 46 34.33214240487628 36.0 36.0 36.0 32.0 36.0 47 34.28973837282927 36.0 36.0 36.0 32.0 36.0 48 34.26327510953897 36.0 36.0 36.0 32.0 36.0 49 34.26748106812099 36.0 36.0 36.0 32.0 36.0 50 33.690437396054065 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 1.0 21 16.0 22 47.0 23 116.0 24 381.0 25 883.0 26 1882.0 27 3721.0 28 6350.0 29 9991.0 30 14478.0 31 21385.0 32 31746.0 33 50287.0 34 107661.0 35 343309.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.56565793028911 17.788435557957307 11.591292893812483 26.054613617941097 2 16.173222655986166 20.553600615974823 36.52690161963555 26.74627510840346 3 18.910056715818126 24.0333912479675 28.597503423379617 28.45904861283476 4 12.388244928282582 15.451959037914412 35.73764679065605 36.422149243146954 5 14.165688765818777 37.02560552464732 33.361812057306395 15.446893652227503 6 34.66210329386815 35.08287012960699 16.635992786854246 13.619033789670612 7 30.451579133987895 30.706368034039393 20.36504546183654 18.477007370136175 8 28.641041443297226 32.67241306531815 19.399414103722215 19.28713138766241 9 27.393099256232535 14.32220918354425 18.439523516053054 39.845168044170165 10 15.84959181433673 26.829152983090054 31.689559395868333 25.63169580670488 11 37.817325307511126 21.359549518366244 21.404800297169295 19.41832487695334 12 24.1985293496889 24.209335505820974 28.556449502325854 23.035685642164268 13 29.70916243847667 19.351461785886148 25.3132518931879 25.62612388244928 14 23.467763041257566 19.618069919207098 25.05018952984778 31.86397750968755 15 25.466733079501232 26.92607069589957 22.652067099475733 24.955129125123467 16 25.9555427982879 25.868924703041763 23.771686182472077 24.403846316198262 17 23.994731998885616 26.173523229014528 25.404766527931383 24.426978244168474 18 25.211775333260167 24.857029488987006 26.250179399076412 23.681015778676414 19 25.286743041426412 25.97428472532946 25.18746148196301 23.55151075128112 20 25.60214772353125 24.145511646165925 25.710209284851963 24.542131345450862 21 26.519657917619945 24.74559100387502 24.188398578315084 24.546352500189954 22 25.40780575934353 24.885564495023257 24.876784493165953 24.829845252467265 23 24.024617774438376 24.777165241323416 25.318317278874808 25.879899705363403 24 24.198698195878464 25.893913939097178 25.163823015424096 24.743564849600254 25 24.798608707397996 24.956479894639976 24.96137643413732 25.283534963824707 26 24.19751627255152 25.601978877341686 25.62966965243012 24.570835197676676 27 25.25398688065107 25.425196916868583 24.900085267325732 24.420730935154623 28 24.12761395007218 25.116039543777596 25.880406243932093 24.875940262218133 29 24.027994698229648 25.684038125469606 25.727600442377017 24.560366733923733 30 24.51123249276072 25.524816168711112 25.805438535765845 24.158512802762324 31 24.354712075035245 25.547779250491764 24.77024254755131 25.327266126921682 32 24.333099762771106 25.61464234155896 24.909202961562166 25.143054934107774 33 24.01499354163325 25.06724299499371 25.42333960878338 25.49442385458966 34 24.452980557361272 25.423170762593816 25.74701775417683 24.37683092586808 35 25.421819993077303 25.231699183628674 25.389570370870658 23.956910452423365 36 24.26015820887962 25.84545508269242 25.14423685743472 24.75014985099324 37 25.309706123207064 25.66766004508193 24.995652210618736 24.026981621092265 38 24.403677470008695 25.262598036318817 25.30295227562452 25.03077221804797 39 24.719588690682222 25.28421034858296 24.947699892782673 25.04850106795215 40 24.947024508024416 25.528024246312818 25.318317278874808 24.206633966787955 41 23.79600003376924 25.87399008872867 25.76643506597665 24.56357481152544 42 25.57411925606369 25.753940447948942 25.235582645988636 23.436357649998733 43 24.760280622367052 24.522545187461482 25.37656921427426 25.340604975897207 44 24.090298942178624 25.382478830908983 25.580535411267107 24.94668681564529 45 24.43052401414931 25.624266574364086 25.26090957442318 24.684299837063428 46 23.935845093490293 25.27040762915911 25.739969675173153 25.053777602177448 47 24.31520206667736 25.054241838397314 26.210162852149832 24.420393242775493 48 24.789153320782432 26.246295936716447 24.77361947134258 24.19093127115854 49 23.806130805143056 25.718820440519707 25.832453926096022 24.64259482824121 50 23.78080387670851 26.448573671813662 24.899241036377912 24.871381415099915 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 12.5 2 16.0 3 43.0 4 70.0 5 86.0 6 102.0 7 100.0 8 98.0 9 122.0 10 146.0 11 211.5 12 277.0 13 465.5 14 654.0 15 922.5 16 1191.0 17 1414.5 18 1638.0 19 1908.0 20 2178.0 21 2743.0 22 3308.0 23 3799.5 24 4291.0 25 4466.5 26 4642.0 27 5483.0 28 6324.0 29 7406.0 30 8488.0 31 9478.0 32 10468.0 33 11899.0 34 13330.0 35 15162.0 36 16994.0 37 19557.0 38 22120.0 39 23976.0 40 25832.0 41 28138.5 42 30445.0 43 31695.0 44 32945.0 45 36590.5 46 40236.0 47 43188.0 48 46140.0 49 46524.0 50 46908.0 51 44185.5 52 41463.0 53 39911.0 54 38359.0 55 39079.5 56 39800.0 57 38434.0 58 37068.0 59 34154.0 60 31240.0 61 27433.5 62 23627.0 63 20660.0 64 17693.0 65 15182.5 66 12672.0 67 11300.0 68 9928.0 69 9173.5 70 8419.0 71 6572.0 72 4725.0 73 4117.0 74 3509.0 75 2547.5 76 1586.0 77 1440.0 78 1294.0 79 1083.0 80 872.0 81 692.0 82 512.0 83 405.0 84 298.0 85 248.5 86 199.0 87 144.0 88 89.0 89 64.5 90 40.0 91 24.0 92 8.0 93 5.5 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01604038800854362 2 0.0038834623599631915 3 6.753847582544681E-4 4 0.0 5 0.0 6 5.065385686908511E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.6884618956361703E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 592255.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 62.41829573840928 #Duplication Level Percentage of deduplicated Percentage of total 1 82.41551607340791 51.442360557036 2 11.339757844031876 14.156167174214563 3 2.871907735022355 5.377787590141516 4 1.1265254345602067 2.812631909248761 5 0.5712121255172198 1.782704368994959 6 0.3334436598374083 1.2487790983097338 7 0.22326944024713336 0.9755268565486268 8 0.15474698458046734 0.7727234438536538 9 0.11822874868135962 0.6641673299977654 >10 0.6927708499220986 8.22966371143714 >50 0.08472916543625458 3.7717225940794603 >100 0.06517626120550878 7.601584666224463 >500 0.0024441097952054547 0.9792475106871982 >1k 2.7156775502282834E-4 0.1849331892261958 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1091 0.18421119281390616 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 895 0.15111733965943724 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 731 0.12342656457100404 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 659 0.11126963892242363 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 640 0.1080615613207149 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 629 0.1062042532355151 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.6884618956361703E-4 0.0 5 0.0 0.0 0.0 1.6884618956361703E-4 0.0 6 0.0 0.0 0.0 1.6884618956361703E-4 0.0 7 0.0 0.0 0.0 1.6884618956361703E-4 0.0 8 0.0 0.0 0.0 1.6884618956361703E-4 0.0 9 0.0 0.0 0.0 1.6884618956361703E-4 0.0 10 0.0 0.0 0.0 1.6884618956361703E-4 0.0 11 0.0 0.0 0.0 1.6884618956361703E-4 0.0 12 0.0 0.0 0.0 1.6884618956361703E-4 1.6884618956361703E-4 13 0.0 0.0 0.0 1.6884618956361703E-4 1.6884618956361703E-4 14 0.0 0.0 0.0 1.6884618956361703E-4 1.6884618956361703E-4 15 0.0 0.0 0.0 5.065385686908511E-4 1.6884618956361703E-4 16 0.0 0.0 0.0 5.065385686908511E-4 1.6884618956361703E-4 17 0.0 0.0 0.0 5.065385686908511E-4 1.6884618956361703E-4 18 0.0 0.0 0.0 0.0011819233269453192 1.6884618956361703E-4 19 0.0 0.0 0.0 0.0011819233269453192 1.6884618956361703E-4 20 0.0 0.0 0.0 0.0013507695165089362 1.6884618956361703E-4 21 0.0 0.0 0.0 0.0018573080851997873 1.6884618956361703E-4 22 0.0 0.0 0.0 0.0025326928434542552 1.6884618956361703E-4 23 0.0 0.0 0.0 0.0037146161703995747 1.6884618956361703E-4 24 0.0 0.0 0.0 0.008273463288617234 1.6884618956361703E-4 25 0.0 0.0 0.0 0.00962423280512617 1.6884618956361703E-4 26 0.0 0.0 0.0 0.013338848975525746 1.6884618956361703E-4 27 0.0 0.0 0.0 0.015196157060725532 1.6884618956361703E-4 28 0.0 0.0 0.0 0.021950004643270214 1.6884618956361703E-4 29 0.0 0.0 0.0 0.03360039172315979 1.6884618956361703E-4 30 0.0 0.0 0.0 0.059433858726393195 1.6884618956361703E-4 31 0.0 0.0 0.0 0.11160733130155086 1.6884618956361703E-4 32 0.0 0.0 0.0 0.17087234383838043 1.6884618956361703E-4 33 0.0 0.0 0.0 0.2311504335125917 1.6884618956361703E-4 34 0.0 0.0 0.0 0.29615621649458423 1.6884618956361703E-4 35 0.0 0.0 0.0 0.37838431081206575 1.6884618956361703E-4 36 0.0 0.0 0.0 0.48847202640754406 1.6884618956361703E-4 37 0.0 0.0 0.0 0.6429662898582537 1.6884618956361703E-4 38 0.0 0.0 0.0 0.8418671011641945 1.6884618956361703E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAGACGC 25 0.0023518712 35.199863 4 GTATTAC 45 0.0013960297 24.448479 1 CGATTAG 45 0.001397404 24.44435 14 TAACCGC 50 0.0025789556 21.999916 6 AACGGGT 135 1.1277734E-10 21.185104 41 CCGATAA 115 8.749339E-9 21.043398 9 ATAACGA 115 8.749339E-9 21.043398 12 CGATAAC 115 8.749339E-9 21.043398 10 GACGGCC 180 0.0 20.777699 11 CGGGTTA 140 1.8371793E-10 20.428493 43 GATATAT 65 4.9225986E-4 20.311043 1 ATCACGA 165 3.6379788E-12 19.999924 25 TTAACGG 55 0.004481057 19.999924 35 TAGGACG 55 0.004481057 19.999924 4 ACGGGTT 145 2.9467628E-10 19.724062 42 CGTTCCA 90 1.0005793E-5 19.555481 10 GCATTCG 180 0.0 19.555481 22 GATAACG 125 2.2821041E-8 19.359924 11 TACGCTA 125 2.2821041E-8 19.359924 9 TTCAACG 160 5.2750693E-11 19.249926 38 >>END_MODULE