##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062699_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1508270 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.228825077738072 32.0 32.0 32.0 32.0 32.0 2 31.29791814462928 32.0 32.0 32.0 32.0 32.0 3 31.427965152127936 32.0 32.0 32.0 32.0 32.0 4 31.557662752690167 32.0 32.0 32.0 32.0 32.0 5 31.452328827066772 32.0 32.0 32.0 32.0 32.0 6 35.055127397614484 36.0 36.0 36.0 36.0 36.0 7 35.07413924562578 36.0 36.0 36.0 36.0 36.0 8 35.01040861384235 36.0 36.0 36.0 36.0 36.0 9 35.16627659503935 36.0 36.0 36.0 36.0 36.0 10 35.01108886339979 36.0 36.0 36.0 36.0 36.0 11 35.165569825031326 36.0 36.0 36.0 36.0 36.0 12 35.062117525376756 36.0 36.0 36.0 36.0 36.0 13 35.11924124990884 36.0 36.0 36.0 36.0 36.0 14 35.07489971954624 36.0 36.0 36.0 36.0 36.0 15 35.02591246925285 36.0 36.0 36.0 36.0 36.0 16 35.04495481578232 36.0 36.0 36.0 36.0 36.0 17 35.01714746033535 36.0 36.0 36.0 36.0 36.0 18 35.03206919185557 36.0 36.0 36.0 36.0 36.0 19 35.01643803828227 36.0 36.0 36.0 36.0 36.0 20 35.00322223474577 36.0 36.0 36.0 36.0 36.0 21 34.99681688291884 36.0 36.0 36.0 36.0 36.0 22 34.98398761494958 36.0 36.0 36.0 36.0 36.0 23 34.93302326506527 36.0 36.0 36.0 32.0 36.0 24 34.91651096952137 36.0 36.0 36.0 32.0 36.0 25 34.88880770684294 36.0 36.0 36.0 32.0 36.0 26 34.84158738156961 36.0 36.0 36.0 32.0 36.0 27 34.82221949650925 36.0 36.0 36.0 32.0 36.0 28 34.81844629940262 36.0 36.0 36.0 32.0 36.0 29 34.783506268771504 36.0 36.0 36.0 32.0 36.0 30 34.774645123220644 36.0 36.0 36.0 32.0 36.0 31 34.77232325777215 36.0 36.0 36.0 32.0 36.0 32 34.72917315865197 36.0 36.0 36.0 32.0 36.0 33 34.70375529580247 36.0 36.0 36.0 32.0 36.0 34 34.694455236794475 36.0 36.0 36.0 32.0 36.0 35 34.66238538192764 36.0 36.0 36.0 32.0 36.0 36 34.62506447784548 36.0 36.0 36.0 32.0 36.0 37 34.628462410576354 36.0 36.0 36.0 32.0 36.0 38 34.58765671928766 36.0 36.0 36.0 32.0 36.0 39 34.56899891929164 36.0 36.0 36.0 32.0 36.0 40 34.54934129830866 36.0 36.0 36.0 32.0 36.0 41 34.52395260795481 36.0 36.0 36.0 32.0 36.0 42 34.483981647848196 36.0 36.0 36.0 32.0 36.0 43 34.483748930894336 36.0 36.0 36.0 32.0 36.0 44 34.45542310063848 36.0 36.0 36.0 32.0 36.0 45 34.39218840128094 36.0 36.0 36.0 32.0 36.0 46 34.42587998170089 36.0 36.0 36.0 32.0 36.0 47 34.38370583516214 36.0 36.0 36.0 32.0 36.0 48 34.35109430009216 36.0 36.0 36.0 32.0 36.0 49 34.34167423604527 36.0 36.0 36.0 32.0 36.0 50 33.77539830401719 36.0 36.0 36.0 32.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 8.0 21 30.0 22 107.0 23 349.0 24 937.0 25 2210.0 26 4880.0 27 8998.0 28 15306.0 29 23994.0 30 35229.0 31 51747.0 32 78967.0 33 130412.0 34 285912.0 35 869184.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.00541616547685 17.75856421219592 11.41419740888734 26.821822213439887 2 16.593831160866017 20.52257237634706 35.72772184992239 27.155874612864533 3 18.78790370114496 24.00682109154703 28.351023660992812 28.854251546315197 4 12.734465801524793 15.73903594120147 35.58828033991284 35.938217917360895 5 14.74331518892506 36.329834843894 33.21845558156033 15.708394385620611 6 34.61493835632333 35.0634669636967 16.55412013140927 13.76747454857071 7 30.171056906256837 30.196715442195366 20.898778070239413 18.73344958130839 8 28.552712710588953 32.24747558461018 19.552732600926888 19.647079103873974 9 27.708102660664203 13.870328256877084 18.231019645023768 40.19054943743494 10 15.797635701830574 26.695419255173146 31.675164261040795 25.831780781955487 11 37.95633407811599 20.993588681071692 21.598056050972307 19.452021189840014 12 24.413268181426403 23.650208517042703 28.516114488785167 23.420408812745727 13 29.919576733608704 19.215790276276795 24.94745635728351 25.91717663283099 14 23.768290823261086 19.05580565813813 24.834744442308075 32.341159076292705 15 25.57194666737388 26.43677856086775 22.287587766116147 25.70368700564223 16 26.31087272172754 25.33631246394876 23.315188925059836 25.037625889263857 17 24.489514476850964 25.30024465115662 25.018265960338663 25.191974911653748 18 25.419255173145395 24.53811320254331 25.618224853640264 24.424406770671034 19 25.705941243941734 25.1028661976967 24.989557572583156 24.20163498577841 20 25.734715932823697 24.037075589914274 25.113341775676766 25.11486670158526 21 26.75097959914339 24.241548263905006 24.027064119819396 24.98040801713221 22 25.844311694855698 24.284246189342756 24.586778229362118 25.28466388643943 23 24.82141791589039 24.032699715568167 25.06494195336379 26.080940415177658 24 24.84581673042625 24.954815782320143 24.765724969667236 25.433642517586375 25 25.259535759512552 24.192087623568725 24.909001703938948 25.639374912979772 26 24.78899666505334 24.762608816723798 25.182294947191153 25.266099571031713 27 25.82866462901205 24.574313617588363 24.46584497470612 25.13117677869347 28 24.917620850378245 24.22119381808297 25.31211255279227 25.549072778746513 29 24.73562425825615 24.909266908444774 25.23759008665557 25.11751874664351 30 25.08171613835719 24.6811247323092 25.303957514238167 24.93320161509544 31 25.039150815172352 24.62092330948703 24.620127695969554 25.719798179371068 32 25.12116530859859 24.65765413354373 24.603287209849693 25.617893348007982 33 24.800400458803797 24.27184787869546 24.952760447400003 25.974991215100747 34 25.109628912595227 24.603950221114257 25.36124168749627 24.92517917879425 35 25.879915399762645 24.315672923282968 24.9689379222553 24.83547375469909 36 24.86285611992548 24.8906362919106 24.829108846559304 25.417398741604618 37 25.79060778242622 24.59804942085966 24.69385454858878 24.917488248125334 38 24.98591101062807 24.3673215007923 25.019127874982594 25.627639613597037 39 25.24899388040603 24.483613676596367 24.77215617893348 25.495236264064125 40 25.536342962466936 24.50038786158977 24.997314804378526 24.965954371564774 41 24.439457126376578 24.850590411531094 25.428669933102167 25.281282528990168 42 25.660060864434087 24.858347643326457 25.023437448202245 24.458154044037208 43 25.038819309540067 23.885047106950346 25.11440259370007 25.961730989809517 44 24.728596338851798 24.453446664058824 25.230761070630592 25.58719592645879 45 24.871674169744143 24.690009083254324 25.079395598931224 25.35892114807031 46 24.618585436132992 24.368894897256254 25.432963792219816 25.57955587439094 47 24.817042041544283 24.169545240573637 25.73372141592686 25.27969130195522 48 25.15265834366526 25.253170851372765 24.787206534639022 24.806964270322954 49 24.304666936291248 24.75863074913643 25.433443614207007 25.503258700365315 50 24.343983504279738 25.276575149011784 24.820821205752285 25.558620140956194 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 9.0 1 9.0 2 9.0 3 52.5 4 96.0 5 131.5 6 167.0 7 171.5 8 176.0 9 251.0 10 326.0 11 461.5 12 597.0 13 1042.5 14 1488.0 15 2106.0 16 2724.0 17 3252.0 18 3780.0 19 4223.0 20 4666.0 21 5535.0 22 6404.0 23 7067.0 24 7730.0 25 8789.0 26 9848.0 27 12006.5 28 14165.0 29 16138.5 30 18112.0 31 19790.0 32 21468.0 33 24885.0 34 28302.0 35 32240.0 36 36178.0 37 43766.5 38 51355.0 39 56489.5 40 61624.0 41 68633.0 42 75642.0 43 78554.0 44 81466.0 45 90192.5 46 98919.0 47 105914.5 48 112910.0 49 115177.0 50 117444.0 51 114089.0 52 110734.0 53 108687.5 54 106641.0 55 107180.5 56 107720.0 57 105155.0 58 102590.0 59 93386.5 60 84183.0 61 74977.5 62 65772.0 63 58198.0 64 50624.0 65 43116.5 66 35609.0 67 31816.0 68 28023.0 69 25137.0 70 22251.0 71 17744.5 72 13238.0 73 11608.5 74 9979.0 75 7546.5 76 5114.0 77 4513.5 78 3913.0 79 3276.0 80 2639.0 81 2082.0 82 1525.0 83 1275.5 84 1026.0 85 816.0 86 606.0 87 466.0 88 326.0 89 213.0 90 100.0 91 63.5 92 27.0 93 18.0 94 9.0 95 9.0 96 9.0 97 7.5 98 6.0 99 3.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.012729816279578591 2 0.0051051867371226635 3 4.641078851929694E-4 4 6.630112645613849E-5 5 0.0 6 3.315056322806925E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.9890337936841548E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1508270.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.93830337791864 #Duplication Level Percentage of deduplicated Percentage of total 1 81.096066286406 48.60760623830403 2 11.982980816344426 14.364790790836626 3 3.2118058056084946 5.775305723025672 4 1.2118364072855503 2.905416728971532 5 0.6321032391214239 1.894359785631248 6 0.38560462573804016 1.3867492224849254 7 0.25370837686409825 1.0644794763399745 8 0.1905776505872167 0.9138320830358055 9 0.14974240075958828 0.8077774900739471 >10 0.740100501717811 8.247474900910083 >50 0.07328234314980679 3.03047300941789 >100 0.06561865160162764 8.028944272785681 >500 0.005347439850279893 2.103522896300708 >1k 0.0012254549656891423 0.8692673818818683 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 6.630112645613849E-5 0.0 6 6.630112645613849E-5 0.0 0.0 6.630112645613849E-5 0.0 7 6.630112645613849E-5 0.0 0.0 6.630112645613849E-5 0.0 8 6.630112645613849E-5 0.0 0.0 6.630112645613849E-5 0.0 9 6.630112645613849E-5 0.0 0.0 1.3260225291227698E-4 0.0 10 1.3260225291227698E-4 0.0 0.0 1.3260225291227698E-4 0.0 11 1.3260225291227698E-4 0.0 0.0 1.3260225291227698E-4 0.0 12 1.3260225291227698E-4 0.0 0.0 1.3260225291227698E-4 3.3150563228069243E-4 13 1.3260225291227698E-4 0.0 0.0 1.3260225291227698E-4 3.3150563228069243E-4 14 1.3260225291227698E-4 0.0 0.0 1.3260225291227698E-4 3.3150563228069243E-4 15 1.9890337936841548E-4 0.0 0.0 1.3260225291227698E-4 5.304090116491079E-4 16 1.9890337936841548E-4 0.0 0.0 1.9890337936841548E-4 5.304090116491079E-4 17 1.9890337936841548E-4 0.0 0.0 2.6520450582455396E-4 5.304090116491079E-4 18 1.9890337936841548E-4 0.0 0.0 3.3150563228069243E-4 5.967101381052464E-4 19 1.9890337936841548E-4 0.0 0.0 3.3150563228069243E-4 5.967101381052464E-4 20 1.9890337936841548E-4 0.0 0.0 6.630112645613849E-4 6.630112645613849E-4 21 1.9890337936841548E-4 0.0 0.0 7.293123910175233E-4 7.956135174736619E-4 22 1.9890337936841548E-4 0.0 0.0 9.945168968420774E-4 7.956135174736619E-4 23 1.9890337936841548E-4 0.0 0.0 0.0017238292878596008 7.956135174736619E-4 24 1.9890337936841548E-4 0.0 0.0 0.002718346184701678 7.956135174736619E-4 25 1.9890337936841548E-4 0.0 0.0 0.003248755196350786 7.956135174736619E-4 26 1.9890337936841548E-4 0.0 0.0 0.00437587434610514 9.282157703859389E-4 27 1.9890337936841548E-4 0.0 0.0 0.005635595748771771 9.282157703859389E-4 28 1.9890337936841548E-4 0.0 0.0 0.01140379375045582 9.282157703859389E-4 29 1.9890337936841548E-4 0.0 0.0 0.023536899891929162 9.282157703859389E-4 30 1.9890337936841548E-4 0.0 0.0 0.04561517500182328 9.282157703859389E-4 31 1.9890337936841548E-4 0.0 0.0 0.09812566715508496 9.945168968420774E-4 32 1.9890337936841548E-4 0.0 0.0 0.15872489673599555 0.0010608180232982158 33 1.9890337936841548E-4 0.0 0.0 0.21799810378778336 0.0010608180232982158 34 1.9890337936841548E-4 0.0 0.0 0.29046523500434274 0.0011271191497543543 35 1.9890337936841548E-4 0.0 0.0 0.3725460295570422 0.0011271191497543543 36 1.9890337936841548E-4 0.0 0.0 0.48605355804995126 0.0011271191497543543 37 1.9890337936841548E-4 0.0 0.0 0.6543921181220869 0.0011271191497543543 38 1.9890337936841548E-4 0.0 0.0 0.8747770624622913 0.0011271191497543543 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATAGCG 45 0.0013984293 24.444279 5 GACGCGA 55 1.5939467E-4 23.999838 37 TAGTACG 110 1.2653618E-7 20.00119 2 GTATTAG 300 0.0 19.069698 1 TATTAGA 255 0.0 18.981524 2 TCGATCG 60 0.007413223 18.333208 41 CGATCGT 60 0.007413223 18.333208 42 CAATACG 445 0.0 17.797632 38 ATACGAA 440 0.0 17.499882 40 CGCAATA 445 0.0 16.808874 36 CGAATGC 475 0.0 16.67357 43 TTAACGG 215 1.2732926E-11 16.371983 35 GTATTAT 175 3.619789E-9 16.345455 1 CGTCTTA 190 6.166374E-10 16.210417 15 GTCCTAT 465 0.0 16.08858 1 GTTATAT 260 0.0 16.07948 1 AATACGA 480 0.0 16.041557 39 ATAACGC 400 0.0 15.950949 3 TACGACG 415 0.0 15.903507 5 GTACGCC 125 9.443895E-6 15.839892 4 >>END_MODULE