FastQCFastQC Report
Thu 2 Feb 2017
SRR4062690_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062690_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1078455
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TACCGTA550.004483494419.9998537
ATACCGT2550.019.842996
TGTAGGA5450.019.7815062
TAGGACG4700.019.659434
CGTCGTA2250.019.55541210
AGGACGT4550.019.3405175
CTGTAGG5600.019.2543221
CGCGGGA1950.019.17934644
CGCAATA2550.018.98025136
GTAGGAC6350.018.7085253
GGACGTG4800.018.3331996
ACCGTCG2550.018.1175148
GACGTGA2800.018.0712957
TAGCGTA2200.017.9998667
AGCGTAT2250.017.599878
GTCGTAG2500.017.5998711
CGAGCCG3000.017.5998715
TTAGGAC3650.017.4793223
CCGTCGT2400.017.4165389
CGTATAT2300.017.21726410
Produced by FastQC (version 0.11.5)