##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062689_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2611155 Sequences flagged as poor quality 0 Sequence length 50 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.181634564014775 32.0 32.0 32.0 32.0 32.0 2 31.345398492238107 32.0 32.0 32.0 32.0 32.0 3 31.464323642219632 32.0 32.0 32.0 32.0 32.0 4 31.583805250933015 32.0 32.0 32.0 32.0 32.0 5 31.509402927057184 32.0 32.0 32.0 32.0 32.0 6 35.08594970424965 36.0 36.0 36.0 36.0 36.0 7 35.09770580451946 36.0 36.0 36.0 36.0 36.0 8 35.044352403438324 36.0 36.0 36.0 36.0 36.0 9 35.16227608089141 36.0 36.0 36.0 36.0 36.0 10 35.05312591554312 36.0 36.0 36.0 36.0 36.0 11 35.177664673295915 36.0 36.0 36.0 36.0 36.0 12 35.097860525323085 36.0 36.0 36.0 36.0 36.0 13 35.1389277924903 36.0 36.0 36.0 36.0 36.0 14 35.09520269765678 36.0 36.0 36.0 36.0 36.0 15 35.05914317610406 36.0 36.0 36.0 36.0 36.0 16 35.06899360627768 36.0 36.0 36.0 36.0 36.0 17 35.04559246770108 36.0 36.0 36.0 36.0 36.0 18 35.055339495357416 36.0 36.0 36.0 36.0 36.0 19 35.03340897035986 36.0 36.0 36.0 36.0 36.0 20 35.028293609532945 36.0 36.0 36.0 36.0 36.0 21 35.016238024935326 36.0 36.0 36.0 36.0 36.0 22 35.004583795293655 36.0 36.0 36.0 36.0 36.0 23 34.96714097784314 36.0 36.0 36.0 36.0 36.0 24 34.95003437176269 36.0 36.0 36.0 32.0 36.0 25 34.91341226392152 36.0 36.0 36.0 32.0 36.0 26 34.868333362056255 36.0 36.0 36.0 32.0 36.0 27 34.85428632157034 36.0 36.0 36.0 32.0 36.0 28 34.835617188562146 36.0 36.0 36.0 32.0 36.0 29 34.81252855537109 36.0 36.0 36.0 32.0 36.0 30 34.80022518770429 36.0 36.0 36.0 32.0 36.0 31 34.794168480997875 36.0 36.0 36.0 32.0 36.0 32 34.75855052649115 36.0 36.0 36.0 32.0 36.0 33 34.72085839408231 36.0 36.0 36.0 32.0 36.0 34 34.70148612395664 36.0 36.0 36.0 32.0 36.0 35 34.67668368978479 36.0 36.0 36.0 32.0 36.0 36 34.647122824956774 36.0 36.0 36.0 32.0 36.0 37 34.63553408357604 36.0 36.0 36.0 32.0 36.0 38 34.59496659524233 36.0 36.0 36.0 32.0 36.0 39 34.57525692653251 36.0 36.0 36.0 32.0 36.0 40 34.557439140916564 36.0 36.0 36.0 32.0 36.0 41 34.52589256478455 36.0 36.0 36.0 32.0 36.0 42 34.48340638529693 36.0 36.0 36.0 32.0 36.0 43 34.465019885835964 36.0 36.0 36.0 32.0 36.0 44 34.427232393327856 36.0 36.0 36.0 32.0 36.0 45 34.369965781426224 36.0 36.0 36.0 32.0 36.0 46 34.37091861647432 36.0 36.0 36.0 32.0 36.0 47 34.30755049010878 36.0 36.0 36.0 32.0 36.0 48 34.258818415605354 36.0 36.0 36.0 32.0 36.0 49 34.240449532869555 36.0 36.0 36.0 32.0 36.0 50 33.720971370906746 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 17 1.0 18 2.0 19 4.0 20 34.0 21 108.0 22 316.0 23 839.0 24 2152.0 25 4960.0 26 9839.0 27 18146.0 28 29572.0 29 44362.0 30 62457.0 31 87737.0 32 128746.0 33 206898.0 34 450400.0 35 1564582.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.80848634439257 18.168241496055362 12.721855981344888 25.30141617820718 2 15.862827808233762 19.98327112346202 37.92778701627772 26.2261140520265 3 19.013521643936553 23.96847056102165 28.167200084866916 28.850807710174877 4 12.509071662978002 15.91473192110918 35.73674158503925 35.839454830873564 5 14.557816199274342 36.52009801030503 32.890208696997576 16.03187709342306 6 34.32288796353778 35.09109619128189 16.61200984550432 13.974005999676004 7 30.56399584245127 30.423483256828206 20.011190454488705 19.00133044623182 8 28.20544931266049 32.95622052310185 18.86758924690415 19.97074091733352 9 27.059443043404162 15.145022030480765 18.78701187788546 39.00852304822961 10 16.47439543037468 26.548558013599344 30.497844823459353 26.479201732566622 11 36.94954914587606 21.658461485434607 21.921869823890194 19.470119544799143 12 25.243043787136344 23.716439659844017 27.943304782749394 23.097211770270246 13 29.293703361156272 19.491374506683822 25.39703694342159 25.817885188738316 14 23.84308859489383 19.853704586667586 25.05408526112008 31.249121557318503 15 25.315923413202203 26.83800846751725 22.65246605429398 25.19360206498657 16 25.81106828204377 26.132573516317493 23.615526462427546 24.44083173921119 17 23.96008662833114 26.12659914865261 25.037655750041647 24.875658472974603 18 24.915181212911527 24.796612993100755 26.321493745105133 23.96671204888258 19 25.307344833991085 25.18938936983825 25.828302034923244 23.674963761247415 20 25.611156748641882 24.140045305621456 25.67656841512664 24.572229530610016 21 26.731618766407966 24.100943835199367 24.893236900911667 24.274200497481 22 25.55221731379409 24.2647410820116 25.451533899749347 24.73150770444497 23 24.136675149502807 24.08734831903889 26.003511855864552 25.77246467559375 24 24.358875669962142 25.20286999431286 25.639688183964566 24.79856615176043 25 24.868420296765226 24.439491336209453 25.648917816062237 25.04317055096308 26 24.34056959468128 25.134394549538424 26.165087863416765 24.35994799236353 27 25.16993437769876 24.767583693805996 25.380530837885917 24.681951090609328 28 24.248886029362485 24.655296219489074 26.156317798062545 24.939499953085896 29 24.133764560127606 24.90775155055904 26.20101066386331 24.757473225450042 30 24.414406651462667 24.957844325595378 26.257882048365573 24.369866974576386 31 24.82269340579169 24.82751885659794 25.173878992246728 25.17590874536364 32 24.438840283322897 24.944631781721117 25.29279188711509 25.3237360478409 33 24.110058575611177 24.581612351622177 25.802566297289896 25.505762775476754 34 24.753490313673453 24.764213537687347 26.020132853086086 24.462163295553115 35 25.43311293278262 24.606582144683102 25.715784777234596 24.244520145299685 36 24.36067563970733 25.21841866913301 25.44081067573545 24.980095015424208 37 25.429053426548787 24.8943858177703 25.29650671829133 24.380054037389584 38 24.353858733012785 24.761379542769387 25.75542240885738 25.129339315360443 39 24.983235388171135 24.774477194957786 25.240860845104944 25.00142657176613 40 25.115437421371002 24.973048325357937 25.49795014083806 24.413564112433004 41 24.09167590587307 25.35326321110773 26.047094102035306 24.507966780983896 42 25.54367703181159 25.304127866786917 25.331050818507517 23.821144282893968 43 24.71952067188658 24.40766633922536 25.558766139888288 25.314046848999773 44 24.314182804161376 25.00586905028618 25.424840731400472 25.255107414151972 45 24.532094035015156 25.16572168255044 25.38765412240943 24.91453016002497 46 24.44255426055406 24.837437589783203 25.545592729030226 25.174415420632513 47 24.541486254736412 24.866476661276966 25.849911571665245 24.742125512321373 48 25.193755253901053 25.67005788626106 24.721933397289707 24.41425346254818 49 24.37549666718368 25.329825307191644 25.242660814850133 25.05201721077454 50 24.29029463601151 25.814295135407562 24.916186483064575 24.97922374551635 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 28.0 1 39.0 2 50.0 3 171.5 4 293.0 5 348.5 6 404.0 7 404.0 8 404.0 9 557.5 10 711.0 11 1121.0 12 1531.0 13 2859.0 14 4187.0 15 6148.0 16 8109.0 17 9403.0 18 10697.0 19 11205.5 20 11714.0 21 12747.5 22 13781.0 23 14557.0 24 15333.0 25 16588.0 26 17843.0 27 21670.0 28 25497.0 29 29816.0 30 34135.0 31 38142.0 32 42149.0 33 48272.5 34 54396.0 35 62138.0 36 69880.0 37 82466.0 38 95052.0 39 103885.0 40 112718.0 41 123019.0 42 133320.0 43 138647.0 44 143974.0 45 158582.5 46 173191.0 47 185920.5 48 198650.0 49 201824.0 50 204998.0 51 195711.0 52 186424.0 53 182908.0 54 179392.0 55 180539.0 56 181686.0 57 175633.5 58 169581.0 59 155304.0 60 141027.0 61 124660.0 62 108293.0 63 94111.5 64 79930.0 65 68250.0 66 56570.0 67 49407.5 68 42245.0 69 39390.0 70 36535.0 71 28065.5 72 19596.0 73 17429.5 74 15263.0 75 10963.0 76 6663.0 77 6099.0 78 5535.0 79 4733.0 80 3931.0 81 3089.0 82 2247.0 83 1911.0 84 1575.0 85 1250.0 86 925.0 87 683.5 88 442.0 89 290.5 90 139.0 91 92.5 92 46.0 93 33.0 94 20.0 95 18.0 96 16.0 97 17.5 98 19.0 99 14.5 100 10.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015165702533936131 2 0.0038680200907261343 3 3.063778289684067E-4 4 7.659445724210168E-5 5 3.829722862105084E-5 6 5.361612006947117E-4 7 3.829722862105084E-5 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.5318891448420335E-4 47 3.829722862105084E-5 48 0.0 49 0.0 50 3.829722862105084E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 2611155.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.311356332461976 #Duplication Level Percentage of deduplicated Percentage of total 1 77.89678462237339 41.52783242156393 2 13.456579087750994 14.34776965526099 3 3.8874706658442837 6.217390016964535 4 1.597176234914166 3.405905255409964 5 0.8275070248421638 2.205776093448803 6 0.4935000978005008 1.57854957383684 7 0.3296034304420386 1.2300124150088154 8 0.21981745853338974 0.9375013487975781 9 0.17516313063281455 0.8404365666128008 >10 0.9576659180881938 9.159101937109053 >50 0.07257803565471813 2.7046359085680494 >100 0.07103556073333747 8.17088776343136 >500 0.010272057413428634 3.7027028927043024 >1k 0.004846674976754883 3.971498151283095 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2943 0.11270874383175261 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2702 0.10347911173407938 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 2661 0.10190892536061627 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2617 0.10022384730129005 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 3.829722862105084E-5 2 0.0 0.0 0.0 0.0 3.829722862105084E-5 3 0.0 0.0 0.0 0.0 3.829722862105084E-5 4 0.0 0.0 0.0 0.0 3.829722862105084E-5 5 0.0 0.0 0.0 0.0 3.829722862105084E-5 6 0.0 0.0 0.0 0.0 3.829722862105084E-5 7 0.0 0.0 0.0 0.0 3.829722862105084E-5 8 0.0 0.0 0.0 7.659445724210168E-5 3.829722862105084E-5 9 0.0 0.0 0.0 1.914861431052542E-4 3.829722862105084E-5 10 0.0 0.0 0.0 2.680806003473559E-4 3.829722862105084E-5 11 0.0 0.0 0.0 3.829722862105084E-4 3.829722862105084E-5 12 0.0 0.0 0.0 4.212695148315592E-4 3.063778289684067E-4 13 0.0 0.0 0.0 4.212695148315592E-4 4.212695148315592E-4 14 0.0 0.0 0.0 4.212695148315592E-4 4.212695148315592E-4 15 0.0 0.0 0.0 4.978639720736609E-4 4.978639720736609E-4 16 0.0 0.0 0.0 6.127556579368134E-4 4.978639720736609E-4 17 0.0 0.0 0.0 6.89350115178915E-4 5.361612006947118E-4 18 0.0 0.0 0.0 9.191334869052201E-4 6.127556579368134E-4 19 0.0 0.0 0.0 9.574307155262709E-4 6.510528865578643E-4 20 0.0 0.0 0.0 0.001148916858631525 7.276473437999659E-4 21 0.0 0.0 0.0 0.0014935919162209826 7.276473437999659E-4 22 0.0 0.0 0.0 0.0024510226317472537 7.276473437999659E-4 23 0.0 0.0 0.0 0.004212695148315592 7.276473437999659E-4 24 0.0 0.0 0.0 0.006625420551441795 7.276473437999659E-4 25 0.0 0.0 0.0 0.008157309696283829 7.276473437999659E-4 26 0.0 0.0 0.0 0.010455143413546879 7.659445724210168E-4 27 0.0 0.0 0.0 0.01282957158805203 8.042418010420676E-4 28 0.0 0.0 0.0 0.0183826697381044 8.042418010420676E-4 29 0.0 0.0 0.0 0.027574004607156602 8.042418010420676E-4 30 0.0 0.0 0.0 0.043237571113166395 8.042418010420676E-4 31 0.0 0.0 0.0 0.08544111705356441 8.042418010420676E-4 32 0.0 0.0 0.0 0.13388711125919373 8.042418010420676E-4 33 0.0 0.0 0.0 0.1765119267144233 8.042418010420676E-4 34 0.0 0.0 0.0 0.22549408212074734 8.425390296631184E-4 35 0.0 0.0 0.0 0.2830931139668078 8.425390296631184E-4 36 0.0 0.0 0.0 0.3615258381827199 8.425390296631184E-4 37 0.0 0.0 0.0 0.47151547878237793 8.425390296631184E-4 38 0.0 0.0 0.0 0.6113769577064556 8.425390296631184E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTCTTA 360 0.0 21.388657 15 CGCAATA 815 0.0 20.245178 36 ATACGAA 835 0.0 19.760265 40 TAGCGGC 865 0.0 19.32927 30 CAATACG 875 0.0 19.108364 38 CTAGCGG 865 0.0 19.074938 29 AATACGA 900 0.0 18.333136 39 TCTAGCG 905 0.0 18.231846 28 TACGAAT 900 0.0 18.088694 41 CGAATGC 945 0.0 17.460127 43 GAGCGAA 1015 0.0 17.339712 16 AGCGAAA 1030 0.0 17.087193 17 GGCGTTA 830 0.0 16.96367 42 GCGAAAG 1060 0.0 16.811136 18 TAGGACG 345 0.0 16.580164 4 GTATTAC 255 0.0 16.396059 1 CGCCGGT 1020 0.0 16.39198 7 CGGTCCA 1070 0.0 16.242813 10 GCAATAC 1080 0.0 16.092419 37 CAGAGCG 1140 0.0 16.017368 14 >>END_MODULE