Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062675_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1455102 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATCAACGCAGAGTACTTTTTTTT | 3544 | 0.24355680907592733 | No Hit |
GTACATGGAAGCAGTGGTATCAACG | 2664 | 0.18307994903450067 | No Hit |
TCCATGTACTCTGCGTTGATACCAC | 2435 | 0.16734222068281124 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 2093 | 0.1438387137121659 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2051 | 0.1409523181192796 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGC | 1795 | 0.12335904974359185 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTT | 1754 | 0.12054137785529812 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCA | 1597 | 0.10975175623427086 | No Hit |
GAATAGGACCGCGGTTCTATTTTGT | 1536 | 0.10555961025412652 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTG | 1504 | 0.10336045170716555 | No Hit |
GATTAAGAGGGACGGCCGGGGGCAT | 1486 | 0.1021234250245 | No Hit |
GTATCTGATCGTCTTCGAACCTCCG | 1472 | 0.10116129316020459 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGTTAT | 155 | 0.0 | 12.8595085 | 1 |
AACGCCA | 165 | 0.0 | 12.6697645 | 15 |
CAAGACG | 310 | 0.0 | 12.561968 | 4 |
CGACCAT | 190 | 0.0 | 12.500475 | 10 |
GTCGTAG | 240 | 0.0 | 12.2713 | 11 |
ACAGCGT | 70 | 1.09041925E-4 | 12.21475 | 8 |
GCATTAT | 70 | 1.0999151E-4 | 12.20341 | 1 |
ATACCGT | 250 | 0.0 | 12.159626 | 6 |
TTTACGA | 55 | 0.003067406 | 12.09137 | 10 |
GTTTACG | 55 | 0.003067406 | 12.09137 | 9 |
TAATACG | 55 | 0.0030729452 | 12.088457 | 4 |
ATACGCG | 55 | 0.0030729452 | 12.088457 | 4 |
ACCGTCG | 245 | 0.0 | 12.020865 | 8 |
AACCGCG | 175 | 0.0 | 11.943311 | 7 |
AAGACGG | 350 | 0.0 | 11.940845 | 5 |
TCGCGTA | 145 | 9.640644E-11 | 11.793551 | 9 |
CGTCGTA | 250 | 0.0 | 11.780448 | 10 |
CCGACCA | 235 | 0.0 | 11.72385 | 9 |
CCGTCGT | 255 | 0.0 | 11.5494585 | 9 |
GCTCGTA | 100 | 1.9282215E-6 | 11.400434 | 9 |