Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062672_2.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1668481 |
Sequences flagged as poor quality | 0 |
Sequence length | 25 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGAAGCAGTGGTATCAACG | 4496 | 0.269466658595453 | No Hit |
TCCATGTACTCTGCGTTGATACCAC | 3596 | 0.21552537907234184 | No Hit |
GTATCAACGCAGAGTACTTTTTTTT | 3031 | 0.1816622424828332 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGC | 2401 | 0.1439033468166554 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCA | 2374 | 0.14228510843096207 | No Hit |
GTTCAAAGCAGGCCCGAGCCGCCTG | 2197 | 0.13167665679141685 | No Hit |
GAATAGGACCGCGGTTCTATTTTGT | 2123 | 0.12724148491951662 | No Hit |
TATCAACGCAGAGTACTTTTTTTTT | 2089 | 0.12520370324864352 | No Hit |
GAGTACATGGAAGCAGTGGTATCAA | 2053 | 0.12304605206771908 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCA | 1994 | 0.11950990152120403 | No Hit |
GAACTACGACGGTATCTGATCGTCT | 1958 | 0.11735225034027957 | No Hit |
GAATAACGCCGCCGCATCGCCAGTC | 1939 | 0.11621348999479167 | No Hit |
GTATCTGATCGTCTTCGAACCTCCG | 1882 | 0.11279720895832797 | No Hit |
GTCCTATTCCATTATTCCTAGCTGC | 1776 | 0.10644412492560598 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTT | 1775 | 0.10638419017058029 | No Hit |
GATTAAGAGGGACGGCCGGGGGCAT | 1770 | 0.10608451639545191 | No Hit |
CATGTACTCTGCGTTGATACCACTG | 1757 | 0.10530536458011808 | No Hit |
GTGTAGCGCGCGTGCAGCCCCGGAC | 1674 | 0.10033077991298672 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACCG | 25 | 0.0060377046 | 18.99703 | 5 |
GCGCGCT | 95 | 3.0559022E-10 | 15.000806 | 15 |
GCGAATT | 45 | 6.763016E-4 | 14.777684 | 13 |
CGAACGA | 130 | 1.8189894E-12 | 13.8874445 | 16 |
CGGCTAA | 55 | 1.9598917E-4 | 13.818509 | 9 |
ACGCGCG | 100 | 1.0073563E-8 | 13.299916 | 13 |
TACACCG | 65 | 5.460954E-5 | 13.15179 | 5 |
TCGCCAG | 320 | 0.0 | 13.067514 | 17 |
CGCATCG | 320 | 0.0 | 13.062418 | 13 |
CGCCAGT | 335 | 0.0 | 13.050176 | 18 |
AAGACGG | 475 | 0.0 | 12.997969 | 5 |
GCATCGC | 335 | 0.0 | 12.761497 | 14 |
GGGTATA | 90 | 5.4377233E-7 | 12.660509 | 1 |
CGGTCCA | 450 | 0.0 | 12.45585 | 10 |
AGGACGT | 285 | 0.0 | 12.331406 | 5 |
TAGGACG | 295 | 0.0 | 12.235008 | 4 |
CAAGACG | 490 | 0.0 | 12.21201 | 4 |
CGCGCTA | 110 | 3.803325E-8 | 12.093373 | 16 |
CGAATTG | 55 | 0.003068061 | 12.091195 | 14 |
ATTCCGA | 165 | 0.0 | 12.09047 | 6 |