##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062670_2.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1610423 Sequences flagged as poor quality 0 Sequence length 25 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.136191547189775 32.0 32.0 32.0 32.0 32.0 2 30.814525748824998 32.0 32.0 32.0 32.0 32.0 3 30.80262142306711 32.0 32.0 32.0 32.0 32.0 4 30.865428524058586 32.0 32.0 32.0 32.0 32.0 5 30.682301482281364 32.0 32.0 32.0 32.0 32.0 6 34.31412305959366 36.0 36.0 36.0 32.0 36.0 7 34.197925638170844 36.0 36.0 36.0 32.0 36.0 8 34.19050895323775 36.0 36.0 36.0 32.0 36.0 9 34.33722630638037 36.0 36.0 36.0 32.0 36.0 10 34.027911300322955 36.0 36.0 36.0 32.0 36.0 11 34.333827199437664 36.0 36.0 36.0 32.0 36.0 12 34.11050823293011 36.0 36.0 36.0 32.0 36.0 13 34.2315546909104 36.0 36.0 36.0 32.0 36.0 14 34.15078522847724 36.0 36.0 36.0 32.0 36.0 15 34.0837165142326 36.0 36.0 36.0 32.0 36.0 16 34.0860972551932 36.0 36.0 36.0 32.0 36.0 17 34.00943106252208 36.0 36.0 36.0 32.0 36.0 18 34.02520021137304 36.0 36.0 36.0 32.0 36.0 19 34.01616159232699 36.0 36.0 36.0 32.0 36.0 20 34.0051433691645 36.0 36.0 36.0 32.0 36.0 21 33.97038355761188 36.0 36.0 36.0 32.0 36.0 22 33.927702845774064 36.0 36.0 36.0 32.0 36.0 23 33.890583405726325 36.0 36.0 36.0 32.0 36.0 24 33.87275082385187 36.0 36.0 36.0 32.0 36.0 25 33.42261132634097 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 1.0 3 8.0 4 62.0 5 164.0 6 264.0 7 54.0 8 260.0 9 286.0 10 181.0 11 52.0 12 124.0 13 88.0 14 299.0 15 366.0 16 554.0 17 807.0 18 1068.0 19 1559.0 20 2248.0 21 3410.0 22 5124.0 23 7615.0 24 10162.0 25 14280.0 26 19426.0 27 25129.0 28 33811.0 29 45034.0 30 57945.0 31 78268.0 32 111268.0 33 160765.0 34 357900.0 35 671841.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.9710883656692 17.167074668723444 10.719462257015214 26.142374708592136 2 16.947503270993504 20.066171251646363 36.546886517172794 26.439438960187335 3 19.653529166294078 23.752384571820322 27.90334038769163 28.69074587419396 4 12.822996994770191 15.073037828384548 35.47034423823728 36.63362093860798 5 14.693241415809805 36.376517300690935 33.482643403201166 15.447597880298089 6 34.5903725083588 34.730897158569206 16.845066292596922 13.833664040475075 7 30.202369427353176 30.227535117011133 20.800281358624126 18.769814097011558 8 28.314346266912782 32.68031498020497 19.67383265278218 19.331506100100064 9 27.420987892962827 14.271374399511716 18.505512154585215 39.80212555294024 10 15.927026539759906 26.72091910004787 31.81252447887201 25.53952988132021 11 37.57914068017467 21.04849900032825 22.111209752021725 19.261150567475358 12 24.69996306663798 23.656502323568585 28.794094641429286 22.84943996836415 13 29.824106575549248 19.453220878920018 25.119709737303804 25.602962808226927 14 23.332779992178615 19.798981727928993 24.991062607753864 31.877175672138524 15 25.150162938133242 27.20762209791705 22.529351865551483 25.11286309839822 16 25.662957082628278 25.62516085155903 24.164348953703346 24.547533112109342 17 23.960590312209927 25.743252611075224 25.48125913542153 24.814897941293317 18 24.738439384528146 24.604262690360855 26.7536390298739 23.9036588952371 19 25.333750333423904 25.18894021250839 25.375160183372262 24.102149270695445 20 25.368983731143597 24.42833944265116 25.583099985576375 24.61957684062887 21 26.33994909169588 24.381459130977593 24.455197832355747 24.823393944970785 22 25.45908972468609 24.83757965546427 25.038136987187343 24.665193632662298 23 24.19468370613386 24.546756971199883 25.559946971373993 25.69861235129226 24 24.558209521322404 25.28780657657069 25.420556679941676 24.733427222165226 25 24.679059315969035 24.83226275384423 25.45123200061679 25.03744592956994 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 271.0 1 271.0 2 615.0 3 959.0 4 959.0 5 959.0 6 2548.5 7 4138.0 8 4138.0 9 4138.0 10 4329.0 11 4520.0 12 4520.0 13 4520.0 14 4818.0 15 5116.0 16 5116.0 17 5116.0 18 8173.5 19 11231.0 20 11231.0 21 11231.0 22 17635.5 23 24040.0 24 24040.0 25 24040.0 26 35811.0 27 47582.0 28 47582.0 29 47582.0 30 59255.0 31 70928.0 32 70928.0 33 70928.0 34 85693.5 35 100459.0 36 100459.0 37 100459.0 38 113550.0 39 126641.0 40 126641.0 41 126641.0 42 144890.5 43 163140.0 44 163140.0 45 163140.0 46 187408.5 47 211677.0 48 211677.0 49 211677.0 50 211885.5 51 212094.0 52 212094.0 53 212094.0 54 198473.0 55 184852.0 56 184852.0 57 184852.0 58 169984.5 59 155117.0 60 155117.0 61 155117.0 62 137911.0 63 120705.0 64 120705.0 65 120705.0 66 99881.5 67 79058.0 68 79058.0 69 79058.0 70 60240.5 71 41423.0 72 41423.0 73 41423.0 74 31988.0 75 22553.0 76 22553.0 77 22553.0 78 18166.0 79 13779.0 80 13779.0 81 13779.0 82 9711.0 83 5643.0 84 5643.0 85 5643.0 86 4145.5 87 2648.0 88 2648.0 89 2648.0 90 1779.0 91 910.0 92 910.0 93 910.0 94 561.0 95 212.0 96 212.0 97 212.0 98 469.5 99 727.0 100 727.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.008507081679782268 2 0.0034773472559693945 3 0.0044087795566754824 4 0.014281961944160012 5 0.035642809373686295 6 0.046012755654880735 7 0.06762198503126197 8 0.08898283246078825 9 0.09463352175173852 10 0.11754675634910827 11 0.11767094732253575 12 0.1317045273198408 13 0.12102410360507766 14 0.12493611926804324 15 0.11406940909313888 16 0.11158558962458931 17 0.12332163661348601 18 0.13015214015199733 19 0.13102147696598967 20 0.12114829457850515 21 0.12673688838274166 22 0.149277550059829 23 0.1387834128052071 24 0.13276015059397436 25 0.13064890404570725 >>END_MODULE >>Sequence Length Distribution pass #Length Count 25 1610423.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.100743564500476 #Duplication Level Percentage of deduplicated Percentage of total 1 78.70018403547986 43.364386590179706 2 13.304408855830339 14.661656412847531 3 3.795018227973147 6.273249786064601 4 1.4892820853359172 3.2824220111719558 5 0.7354572034653198 2.026211938540362 6 0.41274346264136136 1.364548301575538 7 0.2882215238163974 1.1116854191503813 8 0.189908162215704 0.8371264757642451 9 0.13526048879306024 0.6707658156655862 >10 0.7707721351989536 8.048364442045079 >50 0.0837226729295754 3.2142413455663337 >100 0.0846018455336562 9.851661585585795 >500 0.007701222320587277 2.8499629839650336 >1k 0.002718078466089627 2.443716891878054 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTT 3786 0.23509351269821654 No Hit GTACATGGAAGCAGTGGTATCAACG 3061 0.19007428483075567 No Hit TCCATGTACTCTGCGTTGATACCAC 2504 0.15548709873120292 No Hit GTACTTTTTTTTTTTTTTTTTTTTT 2465 0.1530653747493671 No Hit TATCAACGCAGAGTACTTTTTTTTT 2274 0.1412051367870429 No Hit GAGTACTTTTTTTTTTTTTTTTTTT 1877 0.11655322856168844 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 6.209548671373918E-5 0.0 0.0 0.0 0.0 6 6.209548671373918E-5 0.0 0.0 0.0 6.209548671373918E-5 7 6.209548671373918E-5 0.0 0.0 0.0 6.209548671373918E-5 8 1.2419097342747837E-4 0.0 0.0 0.0 6.209548671373918E-5 9 1.2419097342747837E-4 0.0 0.0 6.209548671373918E-5 6.209548671373918E-5 10 1.2419097342747837E-4 0.0 0.0 1.2419097342747837E-4 1.2419097342747837E-4 11 1.2419097342747837E-4 0.0 0.0 1.8628646014121755E-4 1.2419097342747837E-4 12 1.2419097342747837E-4 0.0 0.0 2.4838194685495674E-4 3.725729202824351E-4 13 1.2419097342747837E-4 0.0 0.0 2.4838194685495674E-4 4.346684069961743E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGAAC 125 1.03682396E-10 12.915393 3 GCATCGC 210 0.0 12.667267 14 TTATACG 75 1.486463E-5 12.660184 2 AGGACGT 360 0.0 12.402209 5 CGCATCG 210 0.0 12.214865 13 ATCGCCA 220 0.0 12.093362 16 TCGTTAG 55 0.003067436 12.091483 14 AAAATCG 55 0.0030695791 12.090355 5 TATCCCG 55 0.0030695791 12.090355 5 ACACGCT 270 0.0 11.964274 9 CGCGCCA 105 2.716024E-7 11.763194 10 GCGTATG 65 8.016312E-4 11.69359 8 CGTCTTA 65 8.020494E-4 11.6928625 15 GGACGTG 375 0.0 11.654611 6 CGAGCGA 90 7.451805E-6 11.612384 10 CGGTCTG 90 7.4569634E-6 11.611663 15 ATATACG 230 0.0 11.566486 6 CGCAAGA 295 0.0 11.265418 2 TAGGACG 405 0.0 11.256993 4 ATATATC 135 4.7530193E-9 11.255245 3 >>END_MODULE