FastQCFastQC Report
Thu 2 Feb 2017
SRR4062665_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062665_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1843
Sequences flagged as poor quality0
Sequence length50
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.4340748779164406No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.16277807921866522No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC30.16277807921866522No Hit
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG30.16277807921866522No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG30.16277807921866522No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA30.16277807921866522No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC30.16277807921866522No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA30.16277807921866522No Hit
CTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTT30.16277807921866522No Hit
CCAGAAGAGCTGTCCCTCTTTTGGCTATAATCTAAACTTACTTTTTGATT30.16277807921866522No Hit
AAATATATCTGGGTCAATAAGATATGTTGATTTTACTTTGACTTGTAAGT30.16277807921866522No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA20.10851871947911015No Hit
CCGCAGCTTCGGCATATAGTTTTAGCCCCGTTACATCTTCCGCGCAGGCC20.10851871947911015No Hit
GTTGGTAACTAAAATTATGAAATAAAAAATAGTGTATGCAATAGTATCCA20.10851871947911015No Hit
TCCTACGCCGCCGCCGTCGCAGGATGGAAGGCATTATGGTTGATGGGAAT20.10851871947911015No Hit
AATCCACCTTCCTCTGCCTCCCGAGTGCTAGGATTAAAGGCATGCGCCAC20.10851871947911015No Hit
TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT20.10851871947911015No Hit
TCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCC20.10851871947911015No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT20.10851871947911015No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10851871947911015No Hit
TGATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAA20.10851871947911015No Hit
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG20.10851871947911015No Hit
GTATCCAGGCGGCTCGGGCCTGCTTTGAACACTCTAATTTTTTCAAAGTA20.10851871947911015No Hit
GTGTTGGGGACAGCTGACTGGTCTGGAGGACTCTTCTCTTTCTGCTCTCT20.10851871947911015No Hit
CTTTTGTGCCGTCTGGTGCGCTCCCGACGATCCTTGAAAATCCACCGGAA20.10851871947911015No Hit
CCTTGCTGGCCTCCTTTTTCCATTCTTTTGGACAATACTTATAAAGCTTT20.10851871947911015No Hit
AACCTTATGTGTATGTATGTAAACTCTCGCTCTTCCTGCCCCCACAACAC20.10851871947911015No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC20.10851871947911015No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGTTATA20.10851871947911015No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG20.10851871947911015No Hit
ACTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAG20.10851871947911015No Hit
GCGTTATTCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTG20.10851871947911015No Hit
GAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTT20.10851871947911015No Hit
GGCGGTGACTCGCCTCGCGGCGGACCGCCCGCCCGCTCCCAAGATCCAAC20.10851871947911015No Hit
GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA20.10851871947911015No Hit
TATCAACGCAGAGTACATGGGCAGTGGTATCAACGCCTGTCTCTTATACA20.10851871947911015No Hit
GCTCAACACCATGGCATGGTAGCCCAGCACCTCGGCTTGCCTCTGAGCCT20.10851871947911015No Hit
ATAGTGAGAAGATTTTTAGGTAGAGGTGAAAAGCCTAACGAGCTTGGTGA20.10851871947911015No Hit
GACTATAAATAGAGAAGGGAGTTATTATAAACATAGCTAGCTCATTCTTT20.10851871947911015No Hit
GCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTT20.10851871947911015No Hit
CCGATAACGAACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAG20.10851871947911015No Hit
GGTCCGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGA20.10851871947911015No Hit
CCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATTCCCATGACCCGC20.10851871947911015No Hit
ACTCATCGCTGATGTGCTCAGCAAATACAGTCTTGAAGGTCCGGAGGCCT20.10851871947911015No Hit
GCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGT20.10851871947911015No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20.10851871947911015No Hit
GTTATGGTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGT20.10851871947911015No Hit
AAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA20.10851871947911015No Hit
GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTG20.10851871947911015No Hit
CCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGAT20.10851871947911015No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)