Basic Statistics
Measure | Value |
---|---|
Filename | SRR4062663_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 879233 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT | 967 | 0.10998222314221599 | No Hit |
GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC | 930 | 0.1057740098472191 | No Hit |
GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG | 892 | 0.10145206105776285 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATCAA | 1335 | 0.0 | 20.109314 | 1 |
ACTAGAC | 55 | 0.0044828234 | 19.999872 | 3 |
TAGGACG | 225 | 0.0 | 19.555431 | 4 |
GTAAACG | 200 | 3.6379788E-12 | 17.599886 | 27 |
CGCGTAA | 140 | 8.3649866E-8 | 17.285603 | 10 |
GCGTAAC | 140 | 8.3649866E-8 | 17.285603 | 11 |
GTATAGA | 105 | 3.765314E-5 | 16.76561 | 1 |
CGTGCGT | 80 | 0.0019878554 | 16.499893 | 9 |
CGTCTTA | 150 | 1.8360333E-7 | 16.133228 | 15 |
GTATTAG | 315 | 0.0 | 16.067045 | 1 |
CGCTTCG | 235 | 3.6379788E-12 | 15.91479 | 32 |
TAACGGC | 195 | 8.894858E-10 | 15.79477 | 36 |
GAGCGAA | 405 | 0.0 | 15.752984 | 16 |
AACCGCG | 270 | 0.0 | 15.48138 | 7 |
TACCGGC | 100 | 4.939893E-4 | 15.400776 | 2 |
GCGCCGA | 300 | 0.0 | 15.3999 | 19 |
GTATAGC | 115 | 8.19799E-5 | 15.307732 | 1 |
GGCGTTA | 230 | 3.6379788E-11 | 15.304249 | 42 |
TAAACGC | 230 | 3.6379788E-11 | 15.304249 | 28 |
AACGCAG | 1745 | 0.0 | 15.128842 | 6 |