FastQCFastQC Report
Thu 2 Feb 2017
SRR4062662_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062662_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1405699
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAG407.027024E-427.5038031
TAGGACG7650.020.70584
GTATAGA1051.7907405E-618.859751
CGCAATA4600.018.65209836
AGGACGT7800.018.6153095
ATACGAA4600.018.1738440
TTAGGAC6100.018.0327153
GACGTGA5050.017.8613157
ATCGTCG1002.4835663E-517.5999344
ACCGTGT1254.854064E-717.5999288
GGACGTG8250.017.3332636
GTCCTAG1802.8558134E-1017.1134761
CGAATGC4900.017.06115743
GAGTATG3750.017.0156861
GTTATAT2201.8189894E-1217.002351
CTAGCGG5000.016.71993329
GATATAT3200.016.5022831
CGGTCCA5200.016.49993310
GTCCTAC7650.016.3944241
TCTAGCG5100.016.3920928
Produced by FastQC (version 0.11.5)