##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062656_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1285095 Sequences flagged as poor quality 0 Sequence length 50 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.21273213264389 32.0 32.0 32.0 32.0 32.0 2 31.379385181640266 32.0 32.0 32.0 32.0 32.0 3 31.479103879479727 32.0 32.0 32.0 32.0 32.0 4 31.5935794629969 32.0 32.0 32.0 32.0 32.0 5 31.514067053408503 32.0 32.0 32.0 32.0 32.0 6 35.111827530260406 36.0 36.0 36.0 36.0 36.0 7 35.11353557519094 36.0 36.0 36.0 36.0 36.0 8 35.05437341208238 36.0 36.0 36.0 36.0 36.0 9 35.183340531244774 36.0 36.0 36.0 36.0 36.0 10 35.063590629486534 36.0 36.0 36.0 36.0 36.0 11 35.18961166295099 36.0 36.0 36.0 36.0 36.0 12 35.09311762943596 36.0 36.0 36.0 36.0 36.0 13 35.13917336850583 36.0 36.0 36.0 36.0 36.0 14 35.0911854765601 36.0 36.0 36.0 36.0 36.0 15 35.06586050058556 36.0 36.0 36.0 36.0 36.0 16 35.076025507841834 36.0 36.0 36.0 36.0 36.0 17 35.04028651578288 36.0 36.0 36.0 36.0 36.0 18 35.05638182391185 36.0 36.0 36.0 36.0 36.0 19 35.02740030892658 36.0 36.0 36.0 36.0 36.0 20 35.015791828619676 36.0 36.0 36.0 36.0 36.0 21 34.99257875876881 36.0 36.0 36.0 36.0 36.0 22 34.9848874985896 36.0 36.0 36.0 36.0 36.0 23 34.934919208307555 36.0 36.0 36.0 32.0 36.0 24 34.90705122967563 36.0 36.0 36.0 32.0 36.0 25 34.87671884179769 36.0 36.0 36.0 32.0 36.0 26 34.83692489660297 36.0 36.0 36.0 32.0 36.0 27 34.819983736610915 36.0 36.0 36.0 32.0 36.0 28 34.79818846077527 36.0 36.0 36.0 32.0 36.0 29 34.76274827931009 36.0 36.0 36.0 32.0 36.0 30 34.746534691987755 36.0 36.0 36.0 32.0 36.0 31 34.73199491088207 36.0 36.0 36.0 32.0 36.0 32 34.68846272065489 36.0 36.0 36.0 32.0 36.0 33 34.64811550897016 36.0 36.0 36.0 32.0 36.0 34 34.62267069749707 36.0 36.0 36.0 32.0 36.0 35 34.560286982674434 36.0 36.0 36.0 32.0 36.0 36 34.533443831000824 36.0 36.0 36.0 32.0 36.0 37 34.506676938280826 36.0 36.0 36.0 32.0 36.0 38 34.436162307066795 36.0 36.0 36.0 32.0 36.0 39 34.381059766009514 36.0 36.0 36.0 32.0 36.0 40 34.3139254296375 36.0 36.0 36.0 32.0 36.0 41 34.29125940105595 36.0 36.0 36.0 32.0 36.0 42 34.188200872309054 36.0 36.0 36.0 32.0 36.0 43 34.20598710601162 36.0 36.0 36.0 32.0 36.0 44 34.16411082449157 36.0 36.0 36.0 32.0 36.0 45 34.04553282053078 36.0 36.0 36.0 32.0 36.0 46 34.0887397429762 36.0 36.0 36.0 32.0 36.0 47 34.03371423902513 36.0 36.0 36.0 32.0 36.0 48 33.9833257463456 36.0 36.0 36.0 32.0 36.0 49 33.98587030530817 36.0 36.0 36.0 32.0 36.0 50 33.41539963971535 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 5.0 21 25.0 22 125.0 23 341.0 24 980.0 25 2350.0 26 4853.0 27 9081.0 28 15490.0 29 23906.0 30 34018.0 31 48907.0 32 71747.0 33 110167.0 34 229443.0 35 733656.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.09713275289499 17.64258602480677 11.775784872024165 25.48449635027407 2 15.866006040264802 20.9364978448192 36.07762541798213 27.11987069693388 3 18.842571337416057 25.051708440653965 28.098810200063806 28.006910021866172 4 12.251331226611613 15.45242250949931 35.38288668602195 36.913359577867126 5 14.416599551005957 36.84638100685164 32.76987304440528 15.967146397737134 6 34.70955341649223 34.595787065497355 16.791664397046123 13.90299512096429 7 30.072298269463765 30.546583009945582 20.938173346209187 18.442945374381463 8 29.074037327979646 31.556110637734953 19.906076982635525 19.46377505164988 9 27.58683210190686 14.207432135367423 18.66251133184706 39.543224430878645 10 16.522358269233013 26.10943159844214 30.626062664627906 26.74214746769694 11 37.89011707305686 21.13773689882849 21.31243215482124 19.659713873293413 12 24.525346375170706 23.895820931526462 28.208887280706875 23.369945412595953 13 29.598434356993064 18.83456086904081 25.90983545963528 25.657169314330847 14 24.354930958411636 19.480972223843374 24.49896700243951 31.66512981530548 15 25.8594889871955 26.05947420229633 23.39033301040001 24.690703800108164 16 26.61865465199071 25.273540088475947 23.819717608425837 24.288087651107507 17 24.126543173850962 25.33431380559414 25.707671417288214 24.83147160326668 18 25.98811760998214 23.438033764040792 26.993490753601872 23.580357872375192 19 25.336648263357965 25.711639995486713 25.33579229551123 23.615919445644096 20 25.23214237079749 23.262949431754073 26.436800392188903 25.068107805259533 21 27.13130157692622 24.21346281792397 24.044448075823187 24.610787529326625 22 25.318828569094116 24.221555604838553 25.158762581754658 25.300853244312677 23 23.76905987495088 23.71497827008898 25.681058598780638 26.834903256179505 24 24.138059832152486 25.8331096144643 25.00173138950817 25.027099163875043 25 25.322719332033817 23.927569557114456 24.876371007590876 25.87334010326085 26 24.09502799403935 24.854271474093355 26.05784008186165 24.99286045000564 27 25.8436924896603 24.54153194899988 25.1713686536793 24.443406907660524 28 24.518809893432003 23.784545111450907 26.20047545123123 25.49616954388586 29 23.97060139522759 24.72898890743486 26.538504935432787 24.761904761904763 30 24.883063119847172 24.58409689556025 26.41719094697279 24.11564903761979 31 24.35384154478852 24.801045837078192 24.937845062038217 25.907267556095075 32 24.27579284021804 24.77272108287714 25.04772020745548 25.90376586944934 33 23.963675837194913 24.157435831592217 25.64261786093635 26.23627047027652 34 24.535773619849117 24.878472019578318 26.257903112221275 24.32785124835129 35 26.339375688178695 24.227703010283285 25.560133686614606 23.87278761492341 36 24.523556624218443 25.446523408775228 25.02079612791272 25.009123839093604 37 26.065621607741065 25.075655885362565 25.180628669475798 23.67809383742058 38 24.669849310751346 24.526591419311412 25.253619382224663 25.54993988771258 39 25.261478723362863 24.424653430291148 25.031301187849923 25.282566658496066 40 25.901042335391544 24.78104731556811 24.833806061030508 24.484104288009835 41 23.4985740353826 25.458973850182282 26.191837957505086 24.850614156930032 42 26.75420883281003 25.460763601134545 24.879172356907468 22.905855209147962 43 25.255020056882955 23.44861663923679 25.0540232434178 26.242340060462453 44 24.48021352507013 24.69047035433178 25.666584960644933 25.162731159953154 45 25.162108637882802 24.860185433761707 25.046319532797185 24.931386395558306 46 24.21163293240256 24.670043335385067 25.921470274913954 25.196853457298424 47 25.16039670218933 24.20404717160988 26.103984530326553 24.531571595874237 48 25.82797380738389 26.38660955026671 23.65116975787782 24.134246884471576 49 24.080865616938826 25.301320135865442 25.906956295059896 24.710857952135832 50 24.31440812889952 26.362429518774498 23.82253749531163 25.500624857014355 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 16.0 1 27.5 2 39.0 3 164.0 4 289.0 5 311.0 6 333.0 7 316.0 8 299.0 9 412.0 10 525.0 11 770.5 12 1016.0 13 1780.0 14 2544.0 15 3546.5 16 4549.0 17 5155.0 18 5761.0 19 6085.0 20 6409.0 21 7160.0 22 7911.0 23 8171.0 24 8431.0 25 8478.0 26 8525.0 27 10301.0 28 12077.0 29 13451.0 30 14825.0 31 15629.0 32 16433.0 33 18922.0 34 21411.0 35 24764.0 36 28117.0 37 35700.5 38 43284.0 39 47215.0 40 51146.0 41 56281.0 42 61416.0 43 62997.0 44 64578.0 45 77504.0 46 90430.0 47 100971.0 48 111512.0 49 111064.0 50 110616.0 51 98882.0 52 87148.0 53 84561.5 54 81975.0 55 85333.5 56 88692.0 57 87482.0 58 86272.0 59 78945.5 60 71619.0 61 63115.0 62 54611.0 63 47780.5 64 40950.0 65 35268.0 66 29586.0 67 25603.5 68 21621.0 69 20420.5 70 19220.0 71 14789.0 72 10358.0 73 9515.5 74 8673.0 75 6094.0 76 3515.0 77 3218.0 78 2921.0 79 2516.0 80 2111.0 81 1690.5 82 1270.0 83 1113.5 84 957.0 85 825.5 86 694.0 87 489.5 88 285.0 89 180.5 90 76.0 91 51.0 92 26.0 93 18.0 94 10.0 95 7.5 96 5.0 97 6.5 98 8.0 99 4.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.015874312793995773 2 0.004046393457293041 3 3.890762939704847E-4 4 1.5563051758819385E-4 5 0.0 6 3.890762939704847E-4 7 1.5563051758819385E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 1.5563051758819385E-4 47 0.0 48 0.0 49 0.0 50 7.781525879409692E-5 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 1285095.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.69803154993647 #Duplication Level Percentage of deduplicated Percentage of total 1 73.06847522746173 30.468115853404516 2 14.492498754986883 12.086173406457162 3 5.107441157473964 6.389107275713803 4 2.370549700879265 3.953890248718243 5 1.2829600241068908 2.6748453781258195 6 0.7835227693932665 1.9602814294952413 7 0.5159364417776339 1.505947381890402 8 0.36510191957092497 1.217922508896864 9 0.2646066213628636 0.9930217721319703 >10 1.443553005609416 11.016774687275882 >50 0.13629421869899197 3.9757809051989335 >100 0.1418830841261387 12.865683778041086 >500 0.018555381935436602 5.264754497732217 >1k 0.008434264516107548 5.179957593895755 >5k 1.874281003579455E-4 0.4477432830222058 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 5729 0.4458036176313814 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 4313 0.33561721117894006 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 2157 0.1678475132188671 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 2110 0.16419019605554452 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 2075 0.16146666199775114 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 2014 0.15671993121131123 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 2008 0.15625303965854664 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 1976 0.15376295137713555 No Hit GAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGA 1805 0.14045654212334496 No Hit GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA 1774 0.13804426910072795 No Hit GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC 1710 0.13306409253790577 No Hit GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC 1640 0.12761702442231898 No Hit CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA 1620 0.12606071924643703 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 1555 0.12100272742482072 No Hit ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCG 1504 0.11703414922632178 No Hit TCGTAGTTCCGACCATAAACGATGCCGACTGGCGATGCGGCGGCGTTATT 1503 0.11695633396752768 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1488 0.11578910508561624 No Hit GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA 1478 0.11501095249767526 No Hit GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCT 1461 0.11368809309817561 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1451 0.11290994051023466 No Hit GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT 1382 0.10754068765344196 No Hit GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC 1356 0.10551749092479544 No Hit GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA 1351 0.10512841463082495 No Hit CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC 1344 0.10458370781926628 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 1343 0.10450589256047217 No Hit CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA 1336 0.1039611857489135 No Hit GCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGA 1311 0.10201580427906108 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 1311 0.10201580427906108 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 1.5563051758819387E-4 2 0.0 0.0 0.0 0.0 1.5563051758819387E-4 3 0.0 0.0 0.0 0.0 1.5563051758819387E-4 4 0.0 0.0 0.0 0.0 1.5563051758819387E-4 5 0.0 0.0 0.0 0.0 1.5563051758819387E-4 6 0.0 0.0 0.0 0.0 1.5563051758819387E-4 7 0.0 0.0 0.0 1.5563051758819387E-4 1.5563051758819387E-4 8 0.0 0.0 0.0 2.334457763822908E-4 1.5563051758819387E-4 9 0.0 0.0 0.0 3.1126103517638775E-4 1.5563051758819387E-4 10 0.0 0.0 0.0 4.668915527645816E-4 1.5563051758819387E-4 11 0.0 0.0 0.0 4.668915527645816E-4 1.5563051758819387E-4 12 0.0 0.0 0.0 4.668915527645816E-4 5.447068115586785E-4 13 0.0 0.0 0.0 4.668915527645816E-4 6.225220703527755E-4 14 0.0 0.0 0.0 4.668915527645816E-4 6.225220703527755E-4 15 7.781525879409694E-5 0.0 0.0 4.668915527645816E-4 8.559678467350663E-4 16 7.781525879409694E-5 0.0 0.0 4.668915527645816E-4 8.559678467350663E-4 17 7.781525879409694E-5 0.0 0.0 5.447068115586785E-4 8.559678467350663E-4 18 7.781525879409694E-5 0.0 0.0 6.225220703527755E-4 8.559678467350663E-4 19 7.781525879409694E-5 0.0 0.0 6.225220703527755E-4 8.559678467350663E-4 20 7.781525879409694E-5 0.0 0.0 7.003373291468724E-4 9.337831055291632E-4 21 7.781525879409694E-5 0.0 0.0 8.559678467350663E-4 9.337831055291632E-4 22 7.781525879409694E-5 0.0 0.0 0.0014784899170878418 9.337831055291632E-4 23 7.781525879409694E-5 0.0 0.0 0.003423871386940265 9.337831055291632E-4 24 7.781525879409694E-5 0.0 0.0 0.00583614440955727 9.337831055291632E-4 25 7.781525879409694E-5 0.0 0.0 0.007859341138203791 9.337831055291632E-4 26 7.781525879409694E-5 0.0 0.0 0.010193798902026699 0.0010115983643232602 27 7.781525879409694E-5 0.0 0.0 0.012606071924643704 0.0010115983643232602 28 7.781525879409694E-5 0.0 0.0 0.018597846851789168 0.0010115983643232602 29 7.781525879409694E-5 0.0 0.0 0.028558199977433574 0.0010115983643232602 30 7.781525879409694E-5 0.0 0.0 0.04435469751263525 0.0010115983643232602 31 7.781525879409694E-5 0.0 0.0 0.08038316233430214 0.0010115983643232602 32 7.781525879409694E-5 0.0 0.0 0.1216252494951735 0.001089413623117357 33 7.781525879409694E-5 0.0 0.0 0.15897657371634002 0.001089413623117357 34 7.781525879409694E-5 0.0 0.0 0.20621043580435688 0.001167228881911454 35 7.781525879409694E-5 0.0 0.0 0.26239305265369484 0.001167228881911454 36 7.781525879409694E-5 0.0 0.0 0.3410642792945269 0.001167228881911454 37 7.781525879409694E-5 0.0 0.0 0.45490800291029065 0.001167228881911454 38 7.781525879409694E-5 0.0 0.0 0.6029904403954571 0.001167228881911454 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAACGG 155 0.0 25.548365 35 TAACGGC 165 0.0 23.999979 36 TGGTATA 315 0.0 23.746012 44 CGACAGT 60 2.8729308E-4 21.999983 6 ATATAGC 50 0.002580539 21.99998 3 GGTGCGA 75 5.4730175E-5 20.533316 10 GTATATA 130 1.6243575E-9 20.308466 1 CCTTATA 55 0.0044837864 19.99998 2 ACCGTTA 55 0.0044837864 19.99998 8 ACGAATT 70 8.123752E-4 18.857126 21 CGCAATA 560 0.0 18.46427 36 GTCTTAG 185 2.1827873E-11 17.838514 1 GTACGAA 75 0.0012909382 17.599985 19 ATACCGT 405 0.0 17.3827 6 GACGGAC 775 0.0 17.316114 7 TAGCGGC 605 0.0 17.090893 30 GACAGTC 245 0.0 17.06121 7 CTAGCGG 600 0.0 16.866652 29 TACCGTC 420 0.0 16.761889 7 CAATACG 605 0.0 16.727257 38 >>END_MODULE