##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062635_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 864841 Sequences flagged as poor quality 0 Sequence length 50 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.172942772139617 32.0 32.0 32.0 32.0 32.0 2 31.276775731030327 32.0 32.0 32.0 32.0 32.0 3 31.419207692512266 32.0 32.0 32.0 32.0 32.0 4 31.549710293568413 32.0 32.0 32.0 32.0 32.0 5 31.469690960534944 32.0 32.0 32.0 32.0 32.0 6 35.05846739458467 36.0 36.0 36.0 36.0 36.0 7 35.073655157422 36.0 36.0 36.0 36.0 36.0 8 35.00180033092788 36.0 36.0 36.0 36.0 36.0 9 35.17142226143303 36.0 36.0 36.0 36.0 36.0 10 35.027912645214556 36.0 36.0 36.0 36.0 36.0 11 35.17364810410237 36.0 36.0 36.0 36.0 36.0 12 35.10087634605667 36.0 36.0 36.0 36.0 36.0 13 35.13518901162179 36.0 36.0 36.0 36.0 36.0 14 35.104547541108715 36.0 36.0 36.0 36.0 36.0 15 35.055392840996205 36.0 36.0 36.0 36.0 36.0 16 35.087047214459076 36.0 36.0 36.0 36.0 36.0 17 35.08618925328471 36.0 36.0 36.0 36.0 36.0 18 35.09204697742128 36.0 36.0 36.0 36.0 36.0 19 35.06568490624288 36.0 36.0 36.0 36.0 36.0 20 35.03589561549464 36.0 36.0 36.0 36.0 36.0 21 35.016111632080346 36.0 36.0 36.0 36.0 36.0 22 35.009213254228236 36.0 36.0 36.0 36.0 36.0 23 34.96183113427786 36.0 36.0 36.0 36.0 36.0 24 34.960388094458985 36.0 36.0 36.0 36.0 36.0 25 34.94399779843925 36.0 36.0 36.0 36.0 36.0 26 34.89785521269228 36.0 36.0 36.0 32.0 36.0 27 34.86980034480327 36.0 36.0 36.0 32.0 36.0 28 34.83862235948573 36.0 36.0 36.0 32.0 36.0 29 34.80694948551237 36.0 36.0 36.0 32.0 36.0 30 34.77764005175518 36.0 36.0 36.0 32.0 36.0 31 34.77225524691822 36.0 36.0 36.0 32.0 36.0 32 34.73610640568613 36.0 36.0 36.0 32.0 36.0 33 34.73631800527496 36.0 36.0 36.0 32.0 36.0 34 34.70927950918146 36.0 36.0 36.0 32.0 36.0 35 34.67725512550862 36.0 36.0 36.0 32.0 36.0 36 34.63120966744176 36.0 36.0 36.0 32.0 36.0 37 34.59732598246383 36.0 36.0 36.0 32.0 36.0 38 34.55417585428998 36.0 36.0 36.0 32.0 36.0 39 34.4863495139569 36.0 36.0 36.0 32.0 36.0 40 34.497185031699466 36.0 36.0 36.0 32.0 36.0 41 34.46318918737664 36.0 36.0 36.0 32.0 36.0 42 34.43335480163406 36.0 36.0 36.0 32.0 36.0 43 34.41583019306439 36.0 36.0 36.0 32.0 36.0 44 34.385548326224125 36.0 36.0 36.0 32.0 36.0 45 34.330301176748094 36.0 36.0 36.0 32.0 36.0 46 34.2709839149624 36.0 36.0 36.0 32.0 36.0 47 34.26978138178001 36.0 36.0 36.0 32.0 36.0 48 34.20176888006004 36.0 36.0 36.0 32.0 36.0 49 34.182032304203894 36.0 36.0 36.0 32.0 36.0 50 33.67098345244964 36.0 36.0 36.0 27.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 5.0 21 22.0 22 59.0 23 166.0 24 434.0 25 1133.0 26 2467.0 27 4910.0 28 8877.0 29 13865.0 30 20981.0 31 30877.0 32 46220.0 33 76227.0 34 164565.0 35 494033.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18035348144413 20.814304861844334 12.206593401510096 24.798748255201435 2 12.792870506774962 22.729017740477012 43.759612026799196 20.71849972594883 3 18.576080144489488 27.10727326967594 31.47433392149744 22.842312664337136 4 10.522986910873687 18.6648397391425 41.49380232181675 29.31837102816706 5 10.751109163418478 40.85398356460899 36.7963590995339 11.598548172438633 6 28.240978956776924 40.87523805008794 19.52259322255356 11.361189770581577 7 25.285399941492 33.898448150465 22.975258978838838 17.840892929204163 8 23.081583782452498 40.034064064955295 21.520256324572955 15.364095828019256 9 26.53967607918681 15.087166311495409 21.123189117999726 37.24996849131806 10 13.595447024366328 30.540873987241586 36.32112723610467 19.542551752287416 11 33.863218788193436 22.557325566202344 26.60766545526866 16.971790190335565 12 22.412905956123726 26.23198946395927 34.08106229931282 17.274042280604178 13 28.48442661714697 23.178595834378804 27.4272380703505 20.909739478123722 14 19.355349711681107 24.773339839346193 28.494139385158658 27.377171063814043 15 21.8242428377008 34.08580305512805 24.738188869399114 19.351765237772028 16 20.198510477648494 29.442984317348508 30.726225976798048 19.632279228204954 17 19.026734393952182 29.769980840408817 30.306611273054816 20.896673492584185 18 18.92833480373849 29.11194080761666 33.58952686100682 18.370197527638027 19 22.731692877650342 27.63398127517081 28.370532849390813 21.263792997788034 20 21.961609128151878 30.26868522653297 29.614576552221738 18.15512909309341 21 22.386311472282188 27.746371876448965 27.30432530372635 22.562991347542496 22 21.116135798372188 31.319398594654974 28.170496079626194 19.393969527346645 23 21.020742541114494 30.33332138508697 28.581323040882662 20.064613032915876 24 21.915126595524494 29.325737332064506 29.286192490874047 19.472943581536953 25 21.58905509798911 29.505770424852663 29.67539698048543 19.2297774966728 26 18.13339099325772 30.43148971891943 31.603728315378206 19.831390972444645 27 19.719462883928955 30.452649677802047 30.29712976142435 19.530757676844644 28 18.983026937899567 31.164688075611586 28.722273805242814 21.130011181246033 29 20.476018135125415 28.659834582310506 28.455403941302503 22.408743341261573 30 20.07432580092757 29.55780311062958 29.326199844826967 21.041671243615877 31 21.037971141516188 28.284505475572967 29.504382886565278 21.17314049634557 32 19.3861068103848 30.618344874953895 29.73402047312743 20.261527841533876 33 19.76918300589357 30.17063252089112 30.597184916071278 19.46299955714403 34 19.804912116793723 30.326614950031278 31.2970823538662 18.571390579308797 35 20.008070847704953 30.768430266372665 29.725926499784354 19.497572386138028 36 19.055294557034184 29.945388805572353 30.5740592779482 20.42525735944526 37 19.66743019815203 29.789753261004048 28.377239284446503 22.165577256397416 38 20.017205474763568 30.98384558548912 28.614623959779887 20.384324979967417 39 20.889504544766034 28.54524704541066 29.2663044420882 21.29894396773511 40 22.584845075568804 28.97966215755266 29.595960413532662 18.839532353345874 41 21.209332120008188 27.184303241867582 31.833481530130975 19.772883107993263 42 20.408722528187262 30.751895435114662 29.739801882658202 19.099580154039874 43 18.35088761980526 30.505260504532046 31.006624339040357 20.137227536622337 44 18.54548986461095 30.034769396918048 30.393910556969434 21.02583018150157 45 18.9050935374248 30.32083354050051 30.378763263998813 20.395309658075877 46 20.15075603492434 28.114647663558966 29.3474754319002 22.387120869616496 47 21.396534160614493 28.632777585706503 29.314868282146662 20.65581997153234 48 19.027196906714643 29.0814149652942 29.157729571100354 22.733658556890806 49 20.106354809728032 28.32555348324143 30.459934253810815 21.108157453219725 50 18.7923560515748 30.53220187294543 28.665500363650658 22.00994171182911 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 14.0 1 14.0 2 14.0 3 34.0 4 54.0 5 73.0 6 92.0 7 95.5 8 99.0 9 176.0 10 253.0 11 343.5 12 434.0 13 763.5 14 1093.0 15 1526.5 16 1960.0 17 2726.5 18 3493.0 19 4138.5 20 4784.0 21 6235.5 22 7687.0 23 8331.0 24 8975.0 25 12205.5 26 15436.0 27 21840.0 28 28244.0 29 33455.5 30 38667.0 31 41947.0 32 45227.0 33 53350.5 34 61474.0 35 71433.0 36 81392.0 37 83526.0 38 85660.0 39 80033.0 40 74406.0 41 69964.5 42 65523.0 43 60021.5 44 54520.0 45 53119.5 46 51719.0 47 50108.0 48 48497.0 49 44385.5 50 40274.0 51 37709.0 52 35144.0 53 31389.0 54 27634.0 55 24685.0 56 21736.0 57 20022.0 58 18308.0 59 15319.5 60 12331.0 61 10416.0 62 8501.0 63 7304.5 64 6108.0 65 5292.0 66 4476.0 67 3877.5 68 3279.0 69 2855.0 70 2431.0 71 2085.5 72 1740.0 73 1462.5 74 1185.0 75 993.5 76 802.0 77 625.0 78 448.0 79 403.0 80 358.0 81 268.5 82 179.0 83 142.0 84 105.0 85 75.5 86 46.0 87 33.0 88 20.0 89 14.5 90 9.0 91 6.0 92 3.0 93 3.5 94 4.0 95 3.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.014800408398769253 2 0.004509499434000006 3 3.4688457184615435E-4 4 1.1562819061538479E-4 5 0.0 6 2.3125638123076958E-4 7 2.3125638123076958E-4 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 864841.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.6488461634727 #Duplication Level Percentage of deduplicated Percentage of total 1 84.42867915079687 53.73788011054265 2 10.678078383113045 13.592947366565308 3 2.419246799106656 4.6194680204343985 4 0.8261322202260332 2.1032945038341975 5 0.39675325449501136 1.2626443430105054 6 0.24097355745251017 0.9202613332655741 7 0.14587495137238488 0.649934063730349 8 0.11922831636922424 0.6070995813531687 9 0.08610381427061119 0.49323675857385213 >10 0.5088352505984383 6.404720931380194 >50 0.07468383364216452 3.3303497916917952 >100 0.06920234284317618 9.114718534250137 >500 0.0047473902517758395 1.9826732521284811 >1k 0.0014607354620848735 1.1807714092394705 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA 1555 0.17980183640692335 No Hit GATATACACTGTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTG 1370 0.15841062114307716 No Hit GTCCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCA 1288 0.14892910951261562 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 1276 0.14754157122523098 No Hit GTCCTACAGTGGACATTTCTAAATTTTCCACCTTTTTCAGTTTTCCTCGC 1242 0.1436102127443079 No Hit GTGTATATCAATGAGTTACAATGAGAAACATGGAAAATGATAAAAACCAC 1177 0.1360943803543079 No Hit CTTTAGGACGTGAAATATGGCGAGGAAAACTGAAAAAGGTGGAAAATTTA 1156 0.13366618835138483 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 1096 0.12672849691446172 No Hit GTGTATATCAATGAGTTACAATGAAAAACATGGAAAATGATAAAAACCAC 868 0.100365269454154 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 1.1562819061538479E-4 0.0 5 0.0 0.0 0.0 1.1562819061538479E-4 0.0 6 0.0 0.0 0.0 1.1562819061538479E-4 0.0 7 0.0 0.0 0.0 1.1562819061538479E-4 0.0 8 0.0 0.0 0.0 1.1562819061538479E-4 0.0 9 0.0 0.0 0.0 3.4688457184615435E-4 0.0 10 0.0 0.0 0.0 3.4688457184615435E-4 0.0 11 0.0 0.0 0.0 3.4688457184615435E-4 0.0 12 0.0 0.0 0.0 3.4688457184615435E-4 0.0 13 0.0 0.0 0.0 3.4688457184615435E-4 0.0 14 0.0 0.0 0.0 3.4688457184615435E-4 0.0 15 0.0 0.0 0.0 3.4688457184615435E-4 0.0 16 0.0 0.0 0.0 3.4688457184615435E-4 0.0 17 0.0 0.0 0.0 3.4688457184615435E-4 0.0 18 0.0 0.0 0.0 4.6251276246153916E-4 0.0 19 0.0 0.0 0.0 4.6251276246153916E-4 0.0 20 0.0 0.0 0.0 9.250255249230783E-4 0.0 21 0.0 0.0 0.0 0.0010406537155384632 0.0 22 0.0 0.0 0.0 0.0019656792404615414 0.0 23 0.0 0.0 0.0 0.0034688457184615436 0.0 24 0.0 0.0 0.0 0.004625127624615392 0.0 25 0.0 0.0 0.0 0.0053188967683077005 0.0 26 0.0 0.0 0.0 0.007053319627538472 0.0 27 0.0 0.0 0.0 0.008093973343076936 0.0 28 0.0 0.0 0.0 0.013065985539538482 0.0 29 0.0 0.0 0.0 0.024281920029230807 0.0 30 0.0 0.0 0.0 0.047060673580461614 0.0 31 1.1562819061538479E-4 0.0 0.0 0.10499039707876939 0.0 32 1.1562819061538479E-4 0.0 0.0 0.18581450231892335 0.0 33 1.1562819061538479E-4 0.0 0.0 0.274963837283385 0.0 34 1.1562819061538479E-4 0.0 0.0 0.3800698625527698 0.0 35 1.1562819061538479E-4 0.0 0.0 0.49246046383092384 0.0 36 1.1562819061538479E-4 0.0 0.0 0.6530680205956934 0.0 37 1.1562819061538479E-4 0.0 0.0 0.904790591565386 0.0 38 1.1562819061538479E-4 0.0 0.0 1.2155991679395404 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCGCA 195 0.0 22.564074 13 CGCAAGG 190 0.0 21.999971 16 ATACACT 1140 0.0 21.80699 4 ACCGCAA 195 0.0 21.435871 14 AAAGGCG 115 8.762072E-9 21.04345 5 ACTGTTC 1100 0.0 20.999971 8 CCGCAAG 200 0.0 20.899973 15 TAGGACC 550 0.0 20.799973 4 GATATAC 1235 0.0 20.665134 1 TAGAACG 75 5.470382E-5 20.533306 4 CGCGGTA 335 0.0 20.358183 43 GCGGTAC 55 0.004482632 19.999973 29 CGCGCTT 55 0.004482632 19.999973 12 TGCGGTA 55 0.004482632 19.999973 28 TTGCGGT 55 0.004482632 19.999973 27 GACGTGA 1205 0.0 19.535246 7 CCGCGGT 350 0.0 19.48569 42 TTAGGAC 1275 0.0 19.325464 3 TGTAGGA 1960 0.0 19.193853 2 CTGTAGG 1950 0.0 19.067743 1 >>END_MODULE