FastQCFastQC Report
Thu 2 Feb 2017
SRR4062633_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR4062633_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1994
Sequences flagged as poor quality0
Sequence length50
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG80.4012036108324975No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT40.20060180541624875No Hit
ATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATC30.15045135406218654No Hit
CTTTTTAACTGCAGCAACTTTAATATACGCTATTGGAGCTGGAATTACCG30.15045135406218654No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA30.15045135406218654No Hit
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA30.15045135406218654No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC30.15045135406218654No Hit
TTAGGGACTAGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCTT30.15045135406218654No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA30.15045135406218654No Hit
GACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAA30.15045135406218654No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC30.15045135406218654No Hit
CTGTAGGACGTGGAATATGGCAAGAAAACTGAAAATCATGGAAAATGAGA30.15045135406218654No Hit
TCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAACGC20.10030090270812438No Hit
ATCCTGACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAATTAGGGACT20.10030090270812438No Hit
GGCTACCACATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGA20.10030090270812438No Hit
GCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTG20.10030090270812438No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA20.10030090270812438No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10030090270812438No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCCTTCCCGGGGGGGGATGCG20.10030090270812438No Hit
GTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATAT20.10030090270812438No Hit
GATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCG20.10030090270812438No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC20.10030090270812438No Hit
GGTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATA20.10030090270812438No Hit
TATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATG20.10030090270812438No Hit
CCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTG20.10030090270812438No Hit
CTTTTGTGCCGTCTGGTGCGCTCCCGACGATCCTTGAAAATCCACCGGAA20.10030090270812438No Hit
GATAAATGCACGCATCCCCCCCCGGGAAGGGGGGTCAGCGCCCGTCGGCA20.10030090270812438No Hit
GTTCTACAAATCCCGTTTCCAACGAATGTGTTTTTCAGTGTAACTCACAC20.10030090270812438No Hit
ACCCGGGGACGGGTCCATACGGCGTTGTTCTTGATTCCCATCGTAACTTA20.10030090270812438No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA20.10030090270812438No Hit
GTCGTCAAGTGGATGTTTCTCATTTTCCATGATTTTCAGTTTTCTTGCCA20.10030090270812438No Hit
GCCACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCC20.10030090270812438No Hit
ACGCAGAGTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAA20.10030090270812438No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC20.10030090270812438No Hit
GTATTGTAAACAGCGTTCTTTAATATGTCTGCTTTTCCATCTCAGCTCTA20.10030090270812438No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA20.10030090270812438No Hit
GGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATG20.10030090270812438No Hit
CAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC20.10030090270812438No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGG20.10030090270812438No Hit
CAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCATCGCAGAGTA20.10030090270812438No Hit
CGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGAC20.10030090270812438No Hit
GTTCATATTGTTGTTCCAGCTATAGGGTTGCAGATCCCCTCAGTTCCTTG20.10030090270812438No Hit
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT20.10030090270812438No Hit
CAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCT20.10030090270812438No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT20.10030090270812438No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG20.10030090270812438No Hit
TGGTGGCGCAGGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCACA20.10030090270812438No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC20.10030090270812438No Hit
CAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTA20.10030090270812438No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA20.10030090270812438No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC20.10030090270812438No Hit
GGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT20.10030090270812438No Hit
CCTAAAGTGTGTATTTCTCATTTTCCGTGATTTTCAGTTTTCTCGCCATA20.10030090270812438No Hit
AAAAAGACCTGTGGCATACTTGTATAAAAAATTAGACCTGGTGGCTGTAG20.10030090270812438No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC20.10030090270812438No Hit
TCTCTGTGCATAATCTTGTGCTTCTCCCGAAGATAGGTCAGGCCTTTTAT20.10030090270812438No Hit
TGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA20.10030090270812438No Hit
GGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA20.10030090270812438No Hit
GATATAGAAAGACCAGTCCTTGCTGAAGGACATATCTGACATCTCTACTT20.10030090270812438No Hit
GTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGA20.10030090270812438No Hit
CACTGAAGGTGGGCAGATTCAAGATGAAGCGCTTCTGGAGCTCCTCCAGA20.10030090270812438No Hit
GAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGC20.10030090270812438No Hit
CGATGGGTCAGCTGTACCAGGAACACCATGAAGAAGACTTCTTTCTATAC20.10030090270812438No Hit
AGTGTGAGCAGGCATTGGCTGCTGAGCCCAAGGCCAAGGACCCTTTCGCT20.10030090270812438No Hit
GTGAGGCCACATTCTGGGATCCAGGAAAGCCGTCCAGGCAGAAGTAGAAC20.10030090270812438No Hit
GTGGAAATGCTTCCGCTGAAGGTCCGGAGGGCGAAGGTACCGAAAGCACA20.10030090270812438No Hit
GTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAAAT20.10030090270812438No Hit
AAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGG20.10030090270812438No Hit
GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA20.10030090270812438No Hit
GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG20.10030090270812438No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)