##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062609_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 278319 Sequences flagged as poor quality 0 Sequence length 50 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.57828247442683 32.0 32.0 32.0 32.0 32.0 2 31.270189961878277 32.0 32.0 32.0 32.0 32.0 3 31.451079516669722 32.0 32.0 32.0 32.0 32.0 4 31.616745533003495 32.0 32.0 32.0 32.0 32.0 5 31.537915126168173 32.0 32.0 32.0 32.0 32.0 6 35.089325558082635 36.0 36.0 36.0 36.0 36.0 7 35.06110973379467 36.0 36.0 36.0 36.0 36.0 8 35.05024809660857 36.0 36.0 36.0 36.0 36.0 9 35.03380653135431 36.0 36.0 36.0 36.0 36.0 10 35.00516673313716 36.0 36.0 36.0 36.0 36.0 11 35.10718995109928 36.0 36.0 36.0 36.0 36.0 12 35.03000873098854 36.0 36.0 36.0 36.0 36.0 13 35.02811162730536 36.0 36.0 36.0 36.0 36.0 14 34.980964289178964 36.0 36.0 36.0 36.0 36.0 15 35.026440882584374 36.0 36.0 36.0 36.0 36.0 16 35.00553321907595 36.0 36.0 36.0 36.0 36.0 17 34.9885598899105 36.0 36.0 36.0 36.0 36.0 18 34.98467945055853 36.0 36.0 36.0 36.0 36.0 19 34.90056014860645 36.0 36.0 36.0 32.0 36.0 20 34.779468882828695 36.0 36.0 36.0 32.0 36.0 21 34.705090202249934 36.0 36.0 36.0 32.0 36.0 22 34.750699736633145 36.0 36.0 36.0 32.0 36.0 23 34.743876630772604 36.0 36.0 36.0 32.0 36.0 24 34.730162152062924 36.0 36.0 36.0 32.0 36.0 25 34.711880971115875 36.0 36.0 36.0 32.0 36.0 26 34.688641450996876 36.0 36.0 36.0 32.0 36.0 27 34.674988053277 36.0 36.0 36.0 32.0 36.0 28 34.61418731743072 36.0 36.0 36.0 32.0 36.0 29 34.55148947790126 36.0 36.0 36.0 32.0 36.0 30 34.500167074472095 36.0 36.0 36.0 32.0 36.0 31 34.430937162033494 36.0 36.0 36.0 32.0 36.0 32 34.3250622487146 36.0 36.0 36.0 32.0 36.0 33 34.16035197022122 36.0 36.0 36.0 32.0 36.0 34 34.00977655136732 36.0 36.0 36.0 32.0 36.0 35 33.86741472914174 36.0 36.0 36.0 32.0 36.0 36 33.80055619630711 36.0 36.0 36.0 32.0 36.0 37 33.66464740100388 36.0 36.0 36.0 27.0 36.0 38 33.55976774851879 36.0 36.0 36.0 21.0 36.0 39 33.35401823087896 36.0 36.0 36.0 21.0 36.0 40 33.17566892666329 36.0 36.0 36.0 14.0 36.0 41 33.143252886076766 36.0 36.0 36.0 14.0 36.0 42 32.873918058055686 36.0 36.0 36.0 14.0 36.0 43 32.814676683948996 36.0 36.0 36.0 14.0 36.0 44 32.70796460176991 36.0 36.0 36.0 14.0 36.0 45 32.373132987686795 36.0 36.0 36.0 14.0 36.0 46 32.31731214900887 36.0 36.0 36.0 14.0 36.0 47 32.02966380304615 36.0 36.0 36.0 14.0 36.0 48 31.879774647077635 36.0 36.0 36.0 14.0 36.0 49 31.785393738839247 36.0 36.0 36.0 14.0 36.0 50 31.221537157003294 36.0 32.0 36.0 14.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 19 1.0 20 4.0 21 16.0 22 43.0 23 154.0 24 387.0 25 1060.0 26 2307.0 27 4443.0 28 7404.0 29 10213.0 30 12508.0 31 15689.0 32 21279.0 33 26196.0 34 42416.0 35 134199.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.94664443518132 19.052119417573415 13.194075117505857 20.8071610297394 2 13.806385776806824 22.838170934151616 39.204329047882545 24.15111424115901 3 19.798287564180413 30.44190617173942 28.550178393702147 21.20962787037802 4 11.014698960545273 16.90110987751465 35.96304959417071 36.121141567769364 5 11.131830740984267 40.709042501589906 32.577725559519834 15.581401197906 6 28.42550041858744 36.36285243086122 19.546416496297386 15.665230654253962 7 25.264893880762724 34.26176437828535 22.103054408789912 18.370287332162015 8 29.676378544044784 29.470499678426552 21.370441831136215 19.482679946392448 9 28.812980788232206 14.055454352739122 21.413198523995845 35.71836633503282 10 17.33478490509092 27.122833870486744 31.621628419188053 23.920752805234283 11 32.90504780485702 23.98470819455373 22.542478235406136 20.567765765183115 12 24.006625490893544 26.930967702528392 30.340724133099066 18.72168267347899 13 30.398212123498574 21.440146019495614 28.47452024475512 19.687121612250692 14 24.345804634250626 20.416500490444417 29.477326377286495 25.760368498018458 15 25.295793675602457 25.253755582622816 30.544087899137324 18.906362842637407 16 21.696326876713414 27.192538058846143 29.169047028769146 21.942088035671297 17 19.399322360313164 25.71294090593887 31.150586197852103 23.73715053589586 18 21.114260973918416 23.639061652276705 35.33930489833608 19.907372475468797 19 21.73944286951304 26.863778613748973 32.76060922897826 18.636169287759728 20 22.772070897064157 22.163416798709395 35.56350806089416 19.50100424333229 21 24.064472781233047 23.370305297159017 31.011177821133302 21.554044100474634 22 21.74986256777295 25.027396620424764 31.756725196626896 21.466015615175394 23 20.551956567823254 25.1276413036839 32.557604762880004 21.76279736561284 24 19.887610978768965 27.881675343760215 32.061770845684265 20.168942831786545 25 22.32474247176801 24.876490645626063 31.921284569145474 20.877482313460455 26 19.180508696855046 25.156025998943658 33.82701145088909 21.836453853312207 27 21.52098850599492 26.701015740930373 33.12996956729508 18.648026185779624 28 20.192656627826345 24.664862980967882 33.55466209637143 21.587818294834346 29 19.226499089174652 26.545798166851707 34.16690919412616 20.060793549847478 30 21.280616846136986 25.671621412839222 33.68688447429029 19.360877266733496 31 19.02205742331641 26.455973181852478 32.69845033935879 21.823519055472318 32 18.83342495481803 27.426442319784133 32.70491773827874 21.035214987119097 33 19.75431070103011 26.780780327609687 32.549700164200075 20.91520880716013 34 19.19919229373489 27.488960509343595 33.75694796258969 19.554899234331828 35 21.199774359637683 27.279488644325394 31.74594619842698 19.77479079760994 36 20.407877291884493 28.053780015018738 31.481860742529257 20.056481950567516 37 21.661834082473707 28.226243986217252 30.913448237454144 19.198473693854893 38 20.68813124508208 28.605305422913997 30.156403263880655 20.55016006812327 39 19.702930809610557 28.474160944815125 31.364369662150267 20.45853858342406 40 20.83616282036081 28.80435758967228 30.124784869160926 20.234694720805983 41 19.15859140051524 28.67932121055336 31.489765341209186 20.67232204772222 42 21.389125428016055 29.635418350885136 29.8251287192035 19.150327501895305 43 20.199483326686284 28.30816437253655 28.931549768431186 22.560802532345978 44 19.471541648252543 28.76950549549258 31.226398485191453 20.53255437106342 45 20.931736604399987 28.64626561607364 29.256716214128392 21.16528156539798 46 20.14709792395749 28.44911216665828 29.806552217247894 21.597237692136336 47 21.445176218655572 28.43823095081543 28.91394407137134 21.202648759157658 48 20.1049874424671 32.10380893866391 26.164580930514987 21.62662268835401 49 19.613824424491323 29.330372701827756 29.852435514643272 21.20336735903765 50 18.809351858838237 32.168842227803346 26.163143730754996 22.858662182603414 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 36.0 1 38.5 2 41.0 3 171.5 4 302.0 5 352.0 6 402.0 7 398.0 8 394.0 9 540.5 10 687.0 11 986.0 12 1285.0 13 2252.0 14 3219.0 15 4560.0 16 5901.0 17 6677.5 18 7454.0 19 7769.0 20 8084.0 21 8068.5 22 8053.0 23 7637.5 24 7222.0 25 5941.0 26 4660.0 27 4924.0 28 5188.0 29 5683.5 30 6179.0 31 6788.0 32 7397.0 33 8167.5 34 8938.0 35 9309.0 36 9680.0 37 10346.0 38 11012.0 39 10829.5 40 10647.0 41 11553.5 42 12460.0 43 13295.0 44 14130.0 45 16842.0 46 19554.0 47 21330.0 48 23106.0 49 21607.5 50 20109.0 51 17870.5 52 15632.0 53 14226.5 54 12821.0 55 12138.5 56 11456.0 57 10898.0 58 10340.0 59 9371.0 60 8402.0 61 7474.0 62 6546.0 63 5665.0 64 4784.0 65 4364.5 66 3945.0 67 3386.0 68 2827.0 69 2462.5 70 2098.0 71 1700.5 72 1303.0 73 1060.0 74 817.0 75 724.5 76 632.0 77 466.0 78 300.0 79 229.0 80 158.0 81 115.5 82 73.0 83 49.0 84 25.0 85 18.5 86 12.0 87 7.5 88 3.0 89 2.5 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01257549789989185 2 0.00467089921995983 3 7.185998799938201E-4 4 0.0 5 0.0 6 7.185998799938201E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 3.5929993999691005E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 278319.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.25621294341432 #Duplication Level Percentage of deduplicated Percentage of total 1 76.09630769377036 35.9602332058439 2 12.503881063704156 11.817721323310591 3 4.286530522405645 6.076955974657385 4 2.105212152929233 3.9793741515955023 5 1.1618350400308621 2.745196202840936 6 0.6985704078516406 1.9807075169642954 7 0.5175794624639731 1.7121191705334802 8 0.3734580841057038 1.4118571798350938 9 0.27055521918500564 1.1506873545682885 >10 1.7490529287303838 15.583532174365002 >50 0.13794261701920804 4.641203697653983 >100 0.08764309921109903 7.884319961902772 >500 0.00838325296801817 2.7234253403941513 >1k 0.0030484556247338795 2.332666745534636 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 1843 0.6621897894143052 No Hit GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1726 0.6201516964346666 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 1523 0.5472138086152939 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1385 0.4976304168957204 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 831 0.2985782501374322 No Hit GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 785 0.28205045289757436 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 773 0.2777388536176114 No Hit GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAA 747 0.2683970551776918 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 729 0.2619296562577474 No Hit TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA 695 0.24971345829785246 No Hit ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAA 673 0.24180885961792045 No Hit GTACATGGGAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA 616 0.22132876303809657 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 614 0.22061016315810278 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 564 0.20264516615825726 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 535 0.19222546789834685 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 492 0.17677557047847972 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 463 0.16635587221856935 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 449 0.16132567305861262 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 426 0.15306177443868366 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 404 0.14515717575875164 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT 392 0.14084557647878873 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 364 0.13078517815887525 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT 341 0.12252127953894631 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT 336 0.12072477983896177 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG 331 0.11892828013897722 No Hit GAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA 330 0.11856898019898031 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG 322 0.11569458067900502 No Hit GGTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAA 315 0.11317948109902665 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 308 0.11066438151904828 No Hit TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA 300 0.107789981999073 No Hit GTATTAGAGGCACTGCCTGCCCAGTGACTAAAGTTTAACGGCCGCGGTAT 291 0.10455628253910082 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG 285 0.10240048289911936 No Hit CCATAGGGTCTTCTCGTCTTATTATTATATTTCAGCCTCTTCACTGAAAG 279 0.1002446832591379 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 0.0 0.0 4 0.0 0.0 0.0 0.0 0.0 5 0.0 0.0 0.0 0.0 0.0 6 0.0 0.0 0.0 0.0 0.0 7 0.0 0.0 0.0 0.0 0.0 8 0.0 0.0 0.0 0.0 0.0 9 0.0 0.0 0.0 0.0 0.0 10 3.5929993999691E-4 0.0 0.0 0.0 0.0 11 3.5929993999691E-4 0.0 0.0 0.0 0.0 12 3.5929993999691E-4 0.0 0.0 0.0 0.0 13 3.5929993999691E-4 0.0 0.0 0.0 0.0 14 3.5929993999691E-4 0.0 0.0 0.0 0.0 15 3.5929993999691E-4 0.0 0.0 0.0 0.0 16 3.5929993999691E-4 0.0 0.0 7.1859987999382E-4 0.0 17 3.5929993999691E-4 0.0 0.0 0.00107789981999073 0.0 18 3.5929993999691E-4 0.0 0.0 0.00143719975998764 0.0 19 3.5929993999691E-4 0.0 0.0 0.0017964996999845502 0.0 20 3.5929993999691E-4 0.0 0.0 0.00323369945997219 0.0 21 3.5929993999691E-4 0.0 0.0 0.0050301991599567405 0.0 22 3.5929993999691E-4 0.0 0.0 0.00826389861992893 0.0 23 3.5929993999691E-4 0.0 0.0 0.020480096579823873 0.0 24 3.5929993999691E-4 0.0 0.0 0.03449279423970336 0.0 25 3.5929993999691E-4 0.0 0.0 0.04347529273962611 0.0 26 3.5929993999691E-4 0.0 0.0 0.052098491299551956 0.0 27 3.5929993999691E-4 0.0 0.0 0.07437508757936037 0.0 28 3.5929993999691E-4 0.0 0.0 0.11210158127903593 0.0 29 3.5929993999691E-4 0.0 0.0 0.16779307197855697 0.0 30 3.5929993999691E-4 0.0 0.0 0.2727086544576547 0.0 31 3.5929993999691E-4 0.0 0.0 0.4218181295563724 0.0 32 3.5929993999691E-4 0.0 0.0 0.6176365968546883 0.0 33 3.5929993999691E-4 0.0 0.0 0.7556077738135017 0.0 34 3.5929993999691E-4 0.0 0.0 0.9338205440519691 0.0 35 3.5929993999691E-4 0.0 0.0 1.1332320107502543 0.0 36 3.5929993999691E-4 0.0 0.0 1.4242649621477512 0.0 37 3.5929993999691E-4 0.0 0.0 1.8105123976444295 0.0 38 3.5929993999691E-4 0.0 0.0 2.244546725160697 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGTTCG 20 7.846505E-4 43.999638 44 TAGGCCC 20 7.846505E-4 43.999638 4 GTAGTCC 20 7.846505E-4 43.999638 4 AGACGTT 30 1.2986243E-4 36.66637 42 CTAGGTA 30 1.2986243E-4 36.66637 4 CCGGTAT 35 3.211703E-4 31.428316 28 TCCTACA 80 1.2914825E-10 30.249752 2 ATACATG 125 0.0 29.93051 1 CGACGGA 30 0.005737744 29.333096 31 TGAACAC 30 0.005737744 29.333096 5 GCACGAA 30 0.005737744 29.333096 43 GATCCTC 40 7.018782E-4 27.499773 6 CCTACAG 80 4.285539E-9 27.499773 3 TGGCCGG 40 7.018782E-4 27.499773 25 AACATAA 40 7.018782E-4 27.499773 25 ATAACAT 40 7.018782E-4 27.499773 3 TCTACTT 50 8.319262E-5 26.399784 2 GATATAC 80 1.297849E-7 24.758694 1 AGATCCT 45 0.0013955802 24.444244 5 GCCGGTA 45 0.0013955802 24.444244 27 >>END_MODULE