##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR4062608_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 647035 Sequences flagged as poor quality 0 Sequence length 50 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.22661679816393 32.0 32.0 32.0 32.0 32.0 2 31.367239793828773 32.0 32.0 32.0 32.0 32.0 3 31.472960504454935 32.0 32.0 32.0 32.0 32.0 4 31.588042377923916 32.0 32.0 32.0 32.0 32.0 5 31.5132519879141 32.0 32.0 32.0 32.0 32.0 6 35.10130363890671 36.0 36.0 36.0 36.0 36.0 7 35.1182007155718 36.0 36.0 36.0 36.0 36.0 8 35.06203682953782 36.0 36.0 36.0 36.0 36.0 9 35.18888622717473 36.0 36.0 36.0 36.0 36.0 10 35.066167981639325 36.0 36.0 36.0 36.0 36.0 11 35.198452943040174 36.0 36.0 36.0 36.0 36.0 12 35.102572503805824 36.0 36.0 36.0 36.0 36.0 13 35.137647886126715 36.0 36.0 36.0 36.0 36.0 14 35.11107281677189 36.0 36.0 36.0 36.0 36.0 15 35.06345406353598 36.0 36.0 36.0 36.0 36.0 16 35.074685295231326 36.0 36.0 36.0 36.0 36.0 17 35.047261740091336 36.0 36.0 36.0 36.0 36.0 18 35.06850788597217 36.0 36.0 36.0 36.0 36.0 19 35.046335978733765 36.0 36.0 36.0 36.0 36.0 20 35.03055476133439 36.0 36.0 36.0 36.0 36.0 21 34.997919741590486 36.0 36.0 36.0 36.0 36.0 22 34.97261971918057 36.0 36.0 36.0 36.0 36.0 23 34.90227885663063 36.0 36.0 36.0 32.0 36.0 24 34.88696747471157 36.0 36.0 36.0 32.0 36.0 25 34.859275000579565 36.0 36.0 36.0 32.0 36.0 26 34.79820875223133 36.0 36.0 36.0 32.0 36.0 27 34.77237398286028 36.0 36.0 36.0 32.0 36.0 28 34.73979151050561 36.0 36.0 36.0 32.0 36.0 29 34.71435548308824 36.0 36.0 36.0 32.0 36.0 30 34.68642190917029 36.0 36.0 36.0 32.0 36.0 31 34.66431182238983 36.0 36.0 36.0 32.0 36.0 32 34.620308020431665 36.0 36.0 36.0 32.0 36.0 33 34.59655814600447 36.0 36.0 36.0 32.0 36.0 34 34.56427395735934 36.0 36.0 36.0 32.0 36.0 35 34.49309079107004 36.0 36.0 36.0 32.0 36.0 36 34.456591992705185 36.0 36.0 36.0 32.0 36.0 37 34.39996290772524 36.0 36.0 36.0 32.0 36.0 38 34.32316798936688 36.0 36.0 36.0 32.0 36.0 39 34.2096130812089 36.0 36.0 36.0 32.0 36.0 40 34.13759070220313 36.0 36.0 36.0 32.0 36.0 41 34.12977968734303 36.0 36.0 36.0 32.0 36.0 42 34.01228681601459 36.0 36.0 36.0 32.0 36.0 43 34.03099368658573 36.0 36.0 36.0 32.0 36.0 44 34.01633760152078 36.0 36.0 36.0 32.0 36.0 45 33.84745956555673 36.0 36.0 36.0 32.0 36.0 46 33.93935413076572 36.0 36.0 36.0 32.0 36.0 47 33.8689978131013 36.0 36.0 36.0 32.0 36.0 48 33.84242583476937 36.0 36.0 36.0 32.0 36.0 49 33.89188374662886 36.0 36.0 36.0 32.0 36.0 50 33.275624966191934 36.0 36.0 36.0 21.0 36.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 20 9.0 21 12.0 22 51.0 23 182.0 24 505.0 25 1228.0 26 2565.0 27 4955.0 28 8530.0 29 12536.0 30 18272.0 31 26391.0 32 38764.0 33 57193.0 34 114202.0 35 361640.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.719790275510704 17.732446703269524 11.747848345451848 25.799914675767916 2 14.942736588306207 21.104928826447814 37.28211310489791 26.67022148034806 3 19.050651203261655 25.126539140971172 28.59297748337411 27.22983217239306 4 12.108791810013075 16.10703610629426 36.1178856134299 35.66628647026277 5 13.354455323127807 37.589620345112706 34.1513210259105 14.904603305848987 6 34.03196142373615 35.25338856003586 17.190856683615905 13.523793332612088 7 29.167973911766754 30.77886049440911 21.49481867286932 18.558346920954815 8 28.112235041381066 33.45723183444481 20.345267257567208 18.085265866606907 9 27.097606775522188 14.668449156537127 18.458506881389724 39.77543718655096 10 15.20783265202037 27.594797808464765 32.590663565340364 24.606705974174503 11 37.43707836515799 21.141978409205066 21.729272759587968 19.691670466048976 12 23.4658094229833 23.997465361224663 29.80627013994606 22.730455075845974 13 30.46898544900971 19.705270966794686 25.17622694290108 24.649516641294518 14 23.604441799902634 19.723198899595847 24.96140085157681 31.710958448924707 15 25.299713307626327 27.372089608753775 23.730864636379795 23.597332447240102 16 25.812668557342338 25.705719165114715 25.217801200862393 23.26381107668055 17 23.659771109754494 26.150208257667668 26.77629494540481 23.413725687173027 18 25.25875725424436 24.053567426800715 28.364926163190553 22.32274915576437 19 24.856615175376913 27.05634161985055 25.22351959322139 22.863523611551155 20 24.36869721112459 24.3255774417149 27.71503859914842 23.590686748012086 21 25.472810589844446 25.667854134629504 23.9047346743221 24.954600601203953 22 24.023739055847056 26.236756898776726 25.228156127566514 24.5113479178097 23 23.07773149829607 25.25705719165115 25.36014280525783 26.30506850479495 24 23.341086649099353 27.008894418385403 25.370652283106786 24.279366649408455 25 24.971137573701576 24.85336960133532 24.986901790475013 25.188591034488088 26 22.871096617648195 25.67171791325044 26.369361781047395 25.087823688053966 27 25.104978865130946 25.931827490012132 25.71452858037046 23.248665064486467 28 23.975982752092236 24.512275224678724 26.07092352036598 25.44081850286306 29 23.344332223140942 25.928581915970543 26.663472609673356 24.06361325121516 30 24.819677451760725 25.043622060630415 26.554050399128332 23.58265008848053 31 23.651889001367778 25.35813364037494 25.65579914533217 25.334178212925114 32 23.49548324279212 26.186218674414828 25.63431653619974 24.683981546593305 33 23.24186481411361 25.21857395658658 26.29873190785661 25.240829321443197 34 23.338459279637114 26.41279065274676 27.13578090829708 23.112969159319046 35 25.369570425092924 25.50093889820489 26.115588801224042 23.013901875478144 36 23.627160818193758 26.498721089276465 25.947746257930405 23.926371834599365 37 25.113942831531528 25.845897053482425 25.8885531694576 23.15160694552845 38 24.079377467988593 25.850379036682714 25.217028445138208 24.85321505019048 39 24.140579721344285 25.422426916627384 25.96490143500738 24.47209192702095 40 25.562604804995093 25.50402992110164 25.12321590022178 23.810149373681487 41 23.015601938071356 25.683618351402938 26.88478984908081 24.4159898614449 42 26.150826462247018 26.34046071696276 25.374361510582887 22.134351310207332 43 24.571004659717016 24.34582364168863 25.680063675071672 25.403108023522687 44 23.87444264993393 25.495684159280408 26.8157054873384 23.814167703447264 45 24.474719296483187 25.695364238410594 25.855633775607195 23.97428268949902 46 23.622288198592653 25.1194297663334 26.892291428721567 24.36599060635238 47 25.001120495800073 24.41583531030006 27.10100690070862 23.482037293191247 48 24.34644184626798 27.554459959662154 24.55864056813001 23.540457625939865 49 23.233828154582056 25.491974931804307 27.459411005587025 23.814785908026614 50 23.206627153090636 27.62694444659099 24.20255473042417 24.96387366989421 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 5.0 1 9.5 2 14.0 3 63.5 4 113.0 5 114.0 6 115.0 7 111.0 8 107.0 9 150.5 10 194.0 11 288.5 12 383.0 13 627.0 14 871.0 15 1210.5 16 1550.0 17 1811.0 18 2072.0 19 2356.0 20 2640.0 21 3051.5 22 3463.0 23 3833.0 24 4203.0 25 4690.5 26 5178.0 27 6664.5 28 8151.0 29 9425.5 30 10700.0 31 11703.5 32 12707.0 33 14706.0 34 16705.0 35 19171.0 36 21637.0 37 24664.5 38 27692.0 39 28685.0 40 29678.0 41 31616.0 42 33554.0 43 34620.5 44 35687.0 45 42405.5 46 49124.0 47 54721.0 48 60318.0 49 57621.5 50 54925.0 51 48669.5 52 42414.0 53 39998.5 54 37583.0 55 38007.5 56 38432.0 57 37201.0 58 35970.0 59 32676.5 60 29383.0 61 26069.0 62 22755.0 63 19756.5 64 16758.0 65 14146.5 66 11535.0 67 10271.0 68 9007.0 69 8519.5 70 8032.0 71 6279.5 72 4527.0 73 4049.5 74 3572.0 75 2571.0 76 1570.0 77 1428.0 78 1286.0 79 1137.5 80 989.0 81 787.0 82 585.0 83 492.5 84 400.0 85 333.0 86 266.0 87 198.0 88 130.0 89 81.0 90 32.0 91 20.0 92 8.0 93 7.0 94 6.0 95 5.0 96 4.0 97 4.0 98 4.0 99 2.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.01406415418022209 2 0.0038637786209401344 3 3.091022896752108E-4 4 1.545511448376054E-4 5 0.0 6 7.727557241880269E-4 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 3.091022896752108E-4 47 0.0 48 0.0 49 0.0 50 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 50 647035.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 59.862727775852065 #Duplication Level Percentage of deduplicated Percentage of total 1 83.26269696611136 49.84332162365588 2 11.001639123978144 13.171762559337344 3 2.670101528473603 4.795186827987054 4 0.9764226283402273 2.33805287978052 5 0.5013569918921548 1.5006298562080067 6 0.28465106261087303 1.0223993443309027 7 0.20589074488681172 0.8627627128908629 8 0.13980765400007644 0.6695414025909672 9 0.10893242023057925 0.5868892636405096 >10 0.6666587264605129 7.962966022375678 >50 0.09118014031589979 3.822974697856224 >100 0.08366808600579621 9.339255483977773 >500 0.005698755083977538 2.2591421456126315 >1k 0.0012951716099948952 1.8251151797556917 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source TCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA 4231 0.6539058938079083 No Hit GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC 3327 0.5141916588747131 No Hit CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC 1602 0.24759093402984383 No Hit GAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTA 1540 0.23800876304991228 No Hit GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG 1070 0.16536972497623775 No Hit GCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCA 991 0.15316018453406693 No Hit GTATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGG 916 0.14156884867124653 No Hit CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC 914 0.14125974638157132 No Hit GTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATACGAATGCC 844 0.13044116624293894 No Hit GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA 744 0.1149860517591784 No Hit CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT 716 0.11065861970372545 No Hit GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA 714 0.11034951741405025 No Hit GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 704 0.1088040059656742 No Hit GAATAACGCCGCCGCATCGCCAGTCGGCATCGTTTATGGTCGGAACTACG 699 0.10803125024148616 No Hit GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 693 0.10710394337246053 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 1.5455114483760537E-4 0.0 3 0.0 0.0 0.0 1.5455114483760537E-4 0.0 4 0.0 0.0 0.0 1.5455114483760537E-4 0.0 5 0.0 0.0 0.0 1.5455114483760537E-4 0.0 6 0.0 0.0 0.0 1.5455114483760537E-4 0.0 7 0.0 0.0 0.0 1.5455114483760537E-4 0.0 8 0.0 0.0 0.0 1.5455114483760537E-4 0.0 9 0.0 0.0 0.0 1.5455114483760537E-4 0.0 10 0.0 0.0 0.0 1.5455114483760537E-4 0.0 11 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 12 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 13 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 14 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 15 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 16 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 17 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 18 0.0 0.0 0.0 1.5455114483760537E-4 1.5455114483760537E-4 19 0.0 0.0 0.0 4.6365343451281615E-4 1.5455114483760537E-4 20 0.0 0.0 0.0 7.727557241880269E-4 4.6365343451281615E-4 21 0.0 0.0 0.0 7.727557241880269E-4 4.6365343451281615E-4 22 0.0 0.0 0.0 0.001236409158700843 4.6365343451281615E-4 23 0.0 0.0 0.0 0.002163716027726475 4.6365343451281615E-4 24 0.0 0.0 0.0 0.0029364717519145024 4.6365343451281615E-4 25 0.0 0.0 0.0 0.00432743205545295 4.6365343451281615E-4 26 0.0 0.0 0.0 0.00602749464866661 4.6365343451281615E-4 27 0.0 0.0 0.0 0.008809415255743507 4.6365343451281615E-4 28 0.0 0.0 0.0 0.012209540442170826 4.6365343451281615E-4 29 0.0 0.0 0.0 0.017000625932136592 4.6365343451281615E-4 30 0.0 0.0 0.0 0.02812830836044418 4.6365343451281615E-4 31 0.0 0.0 0.0 0.05393834954832428 4.6365343451281615E-4 32 0.0 0.0 0.0 0.0831485159226317 4.6365343451281615E-4 33 0.0 0.0 0.0 0.11962258610430657 4.6365343451281615E-4 34 0.0 0.0 0.0 0.16011498605175917 7.727557241880269E-4 35 0.0 0.0 0.0 0.20848949438592967 7.727557241880269E-4 36 0.0 0.0 0.0 0.2775738561283393 7.727557241880269E-4 37 0.0 0.0 0.0 0.39194170330816724 7.727557241880269E-4 38 0.0 0.0 0.0 0.5217646649717558 9.273068690256323E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTGGTCG 30 0.005743164 29.33323 9 TAACGGC 95 2.6804628E-8 23.157812 36 TTGACGG 105 3.0631782E-9 23.047537 33 CGCGGGA 125 4.0017767E-11 22.87992 44 TGTAGGA 420 0.0 22.52547 2 TGGTATA 215 0.0 22.511547 44 ATTGACG 120 5.966285E-10 21.999922 32 CGCAATA 255 0.0 21.56855 36 CTAAGAC 75 5.4677446E-5 20.533262 3 GTAGGAC 430 0.0 20.465044 3 ATACGAA 270 0.0 20.370298 40 CCCTATA 65 4.9263035E-4 20.30919 2 CTATACT 65 4.928872E-4 20.307621 4 CTAATCC 65 4.928872E-4 20.307621 3 GTCTTAC 55 0.0044794865 20.001474 1 CCGTCCA 55 0.0044814907 19.99993 9 TCTATAC 55 0.0044814907 19.99993 3 ATCGTTT 155 3.274181E-11 19.870897 29 AAGTACT 190 0.0 19.684141 4 CTGTAGG 430 0.0 19.443295 1 >>END_MODULE